rna9884, rna9884 (mRNA) Nannochloropsis gaditana

Overview
Namerna9884
Unique Namerna9884
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length780
Alignment locationKK037257.1:52514..53397 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100519g4.3617.mrna
Orig protein idgnl|cribi|Naga_100519g4.3617
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:52514..53397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100519g4gene9593Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9884rna9884-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20818.1cds9853Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9884 ID=rna9884|Name=rna9884|organism=Nannochloropsis gaditana|type=mRNA|length=780bp
CTCCGGCCCACCCTCCCTCAGCCTGTGACCGCCACGGACCACACCTTCGT
GTCTTGGTCCACCGACTTCAGCAACGACGCGTCCGCTGACGCCGTCCTCG
ACTCGCGCTTCAAAAAACGTACTGCTGCTTGCCTACCCTTTGGCCACCTA
CCTCTTTCTTTCTCACCCCCATGGACTGTCTCGTTCACCTATCGGGTCAC
CTCCATCGTTGTGTCGTCCGCTTTTTTCTCTGATTTCCCCTGTCCATTTC
CCGTCGTCTCGTCTCTTTCCCTAATCAAGTACAAGCGCGTCAAACCGATT
CCAAACTTTCCTCTTCCCACCCTCTTTCCCGCCCTCCCTCCCTTCCTCCT
CCGTTCTTCTCGCAGGCGAGGGCTTGCAAGGGCTCCACGATCTTTTCGCG
CGAAAGTGAGAAGGGAGACGAGATCGATAGACATGATAGAAAATAGTAGA
GGGACGGTGCAGAGGACACGGGCGGGAATGCGAGAAAGAAGGTAGAAAGA
GGCGGAAAAGGAGGGTGGGGGGAGGGAGATGAGGTGGGGGACAGGACAAG
CTGGGTGAGAAAATGGAGCCACGGAGGCAGTGGTCGGAAAGAGTGGAATA
ATAGACGAAAGGAAGGTGAGCGAATGCGAAGATAGGGCAAATTGAGAGGA
AGAAAGCCGGAGGATAGCCTCACACTGTGGGCGGGCGCGAGGGGGGAAAG
GGGGATGGAGGGAGGGGTGCCAGCTCTCCCAGGATGATGTCAAACACTCC
TGGAGAAAGAGGTTAGGATTTTCTCTTCGG
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protein sequence of rna9884

>rna9884-protein ID=rna9884-protein|Name=rna9884|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MSIPPSSRPPRFGGKGNGKLEMFKFGLYVSIPVIASIIYGTPDNMQNIVN
KFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKEDTKSKGDDTAA
ETKKGKWGGLWKA
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mRNA from alignment at KK037257.1:52514..53397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9884 ID=rna9884|Name=rna9884|organism=Nannochloropsis gaditana|type=mRNA|length=884bp|location=Sequence derived from alignment at KK037257.1:52514..53397+ (Nannochloropsis gaditana)
AGCCACATTCTGGCTCGAAATTAACGTATGTCAGGGAGCATAGTCTTCCG
ACACGGATTGGATTCGCGGTATGCGGTTAGATGGTCGTTGAAGCTAACAT
TTTACGTCATCCATCCATCCCACAGGAACAAGGGGGGGTAAATAACGGAG
CTCATTCCCTGTTAAAACTTTGTTGCAGCGACTGCGATCGGCATTTTAGA
TCCAGACGCACACAGCATGTCTATACCACCatcatcacgtcctcctAGAT
TCGGTGGCAAAGGCAACGGAAAGCTGGAAATGTTCAAATTCGGCCTTTAT
GTATCAAGTAAGGCAGGAATGGGAGTGAGCAGGAGagcgatgagggagga
gggaggcaggaaagtggatcggagaaagaagatgatggaaacaagagaag
gaaagagggttTTCTGCGTCGTCTGTGCGCTTTCAACGACCGAGCCAAAC
CATGTGATAGTGGAAAGCATGCGTACACTCGTACGTTCAATGAGTCAGAT
CTTAAAATGCTCTGAGGCATCGCGCTTCCGTTCGGTTGTTACATTCCCCC
CCTTTATCTCTTTCACGTGCCAACAGTTCCAGTCATCGCGTCCATCATCT
ACGGCACTCCAGATAATATGCAAAATATCGTGAATAAATTCCGTTACGTG
GAGTATCCTGCCGAGGATAACCGCGACGGAGACGTACTCGTGGGGCAAAG
CATAagcaaagaagagagggcaagAGCGATGGCTGCCctcgaaaaaaaag
aagacacAAAATCAAAAGGAGATGACACTGCAGCTGAGACGAAAAAGGGT
AAATGGGGAGGGCTGTGGAAGGCATGAAAGCGCACCAATGAGGCAGCTTC
AAGTGTAAGAGACAAATTACCAAAAGCCGTTGCT
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Coding sequence (CDS) from alignment at KK037257.1:52514..53397+

>rna9884 ID=rna9884|Name=rna9884|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at KK037257.1:52514..53397+ (Nannochloropsis gaditana)
ATGTCTATACCACCatcatcacgtcctcctAGATTCGGTGGCAAAGGCAA
CGGAAAGCTGGAAATGTTCAAATTCGGCCTTTATGTATCAATTCCAGTCA
TCGCGTCCATCATCTACGGCACTCCAGATAATATGCAAAATATCGTGAAT
AAATTCCGTTACGTGGAGTATCCTGCCGAGGATAACCGCGACGGAGACGT
ACTCGTGGGGCAAAGCATAagcaaagaagagagggcaagAGCGATGGCTG
CCctcgaaaaaaaagaagacacAAAATCAAAAGGAGATGACACTGCAGCT
GAGACGAAAAAGGGTAAATGGGGAGGGCTGTGGAAGGCATGAATGTCTAT
ACCACCatcatcacgtcctcctAGATTCGGTGGCAAAGGCAACGGAAAGC
TGGAAATGTTCAAATTCGGCCTTTATGTATCAATTCCAGTCATCGCGTCC
ATCATCTACGGCACTCCAGATAATATGCAAAATATCGTGAATAAATTCCG
TTACGTGGAGTATCCTGCCGAGGATAACCGCGACGGAGACGTACTCGTGG
GGCAAAGCATAagcaaagaagagagggcaagAGCGATGGCTGCCctcgaa
aaaaaagaagacacAAAATCAAAAGGAGATGACACTGCAGCTGAGACGAA
AAAGGGTAAATGGGGAGGGCTGTGGAAGGCATGA
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Synonyms
Publications