EWM20818.1, cds9853 (CDS) Nannochloropsis gaditana

Overview
NameEWM20818.1
Unique Namecds9853
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:52730..52820 +
Alignment locationKK037257.1:53090..53340 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20818.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100519g4.3617.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:52730..52820 +
KK037257.1supercontigKK037257.1:53090..53340 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Homology
BLAST of EWM20818.1 vs. NCBI_GenBank
Match: gi|585100739|gb|EWM20818.1| (hypothetical protein Naga_100519g4 [Nannochloropsis gaditana])

HSP 1 Score: 231.876 bits (590), Expect = 3.180e-77
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 MSIPPSSRPPRFGGKGNGKLEMFKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKEDTKSKGDDTAAETKKGKWGGLWKA 113
            MSIPPSSRPPRFGGKGNGKLEMFKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKEDTKSKGDDTAAETKKGKWGGLWKA
Sbjct:    1 MSIPPSSRPPRFGGKGNGKLEMFKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKEDTKSKGDDTAAETKKGKWGGLWKA 113          
BLAST of EWM20818.1 vs. NCBI_GenBank
Match: gi|553191840|ref|XP_005855469.1| (hypothetical protein NGA_0139900 [Nannochloropsis gaditana CCMP526] >gi|422293598|gb|EKU20898.1| hypothetical protein NGA_0139900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 228.024 bits (580), Expect = 1.127e-75
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0
Query:    1 MSIPPSSRPPRFGGKGNGKLEMFKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKEDTKSKGDDTAAETKKGKWGGLWKA 113
            MSIPPSSRPPRFGGKGNGKLE+FKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKED KSKGDDTAAETKKGKWGGLWKA
Sbjct:    1 MSIPPSSRPPRFGGKGNGKLEIFKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKEDIKSKGDDTAAETKKGKWGGLWKA 113          
BLAST of EWM20818.1 vs. NCBI_GenBank
Match: gi|675169153|ref|XP_008893461.1| (hypothetical protein PPTG_01824 [Phytophthora parasitica INRA-310] >gi|566022019|gb|ETI44930.1| hypothetical protein F443_10375 [Phytophthora parasitica P1569] >gi|567959358|gb|ETK84931.1| hypothetical protein L915_10150 [Phytophthora parasitica] >gi|567988065|gb|ETL38349.1| hypothetical protein L916_10058 [Phytophthora parasitica] >gi|568017303|gb|ETL91480.1| hypothetical protein L917_09987 [Phytophthora parasitica] >gi|568047704|gb|ETM44777.1| hypothetical protein L914_10021 [Phytophthora parasitica] >gi|568107068|gb|ETN21698.1| hypothetical protein PPTG_01824 [Phytophthora parasitica INRA-310] >gi|570325626|gb|ETO73574.1| hypothetical protein F444_10487 [Phytophthora parasitica P1976] >gi|570949500|gb|ETP14757.1| hypothetical protein F441_10327 [Phytophthora parasitica CJ01A1] >gi|570982872|gb|ETP42827.1| hypothetical protein F442_10293 [Phytophthora parasitica P10297] >gi|970645774|gb|KUF86147.1| hypothetical protein AM587_10009107 [Phytophthora nicotianae] >gi|970651669|gb|KUF90447.1| hypothetical protein AM587_10005242 [Phytophthora nicotianae] >gi|970656935|gb|KUF94885.1| hypothetical protein AM588_10004952 [Phytophthora nicotianae])

HSP 1 Score: 53.1434 bits (126), Expect = 3.083e-7
Identity = 22/66 (33.33%), Postives = 41/66 (62.12%), Query Frame = 0
Query:   17 NGKLEMFKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAM 82
            + K E+ + G+Y+SIP++A+ IY  PD +  I+N+++Y++YP            Q++S+EE  + M
Sbjct:    3 SAKWEIARIGVYISIPIVATCIYAQPDCINYIINRWKYIQYP-----------PQAVSREEYYKKM 57          
The following BLAST results are available for this feature:
BLAST of EWM20818.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100739|gb|EWM20818.1|3.180e-77100.00hypothetical protein Naga_100519g4 [Nannochloropsi... [more]
gi|553191840|ref|XP_005855469.1|1.127e-7598.23hypothetical protein NGA_0139900 [Nannochloropsis ... [more]
gi|675169153|ref|XP_008893461.1|3.083e-733.33hypothetical protein PPTG_01824 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9884rna9884Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications