rna9882, rna9882 (mRNA) Nannochloropsis gaditana

Overview
Namerna9882
Unique Namerna9882
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1595
Alignment locationKK037257.1:48600..49654 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100835g3.4731.mrna
Orig protein idgnl|cribi|Naga_100835g3.4731
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:48600..49654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100835g3gene9591Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9882rna9882-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20823.1cds9851Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9882 ID=rna9882|Name=rna9882|organism=Nannochloropsis gaditana|type=mRNA|length=1595bp
TTTGATTTTCTTGCCTGTCTTCAGTCTCGACAACGTCCAGTCCTTGGAAG
GAGGAGGTTGATGTAACCTCCTGCATTCTTGCTTGAAGCTTCACGAATTT
CTCAAAACACTCACGATGCACGCAATTTATGTACAGGGAATAAAATCAGA
GTACAGACTCATGCAACTACAGCAGCTATGCGCGGTATCTTCGCTCCTGT
TCTCACGCCTTTCCTCCCATCGGGAGCCCCAGACATAACGCGCTTTTTGC
GGCATGCACGATGGCTCCTGTCATATGACGTGAACCTGGCAATATTTGGA
ACCAATTCGGAGGCCAGCTCCATGACCACCTCGGAAAAACTGACACTCCT
GCATACGCTCGTTGAAGAAGGAAAAGCAGATCCCAATCGCTTGATGCCTG
GTACTGGCGCCTGCGCCGTGGGTGACGCCGTCACTCTCTCGAAAGCATCC
GTCAGACTTGGATGCGGAGGTGTCCTGGTCCTTCCTCCCTTTTATTACAA
GGGAGTCGGCGACGAGGGTGTCTTCCGGTATTACGCCCGTCTGATCGAGC
AGGTCGCAGACGAGAGGCTGCGGGTCTACCTCTATCACATCCCGCAAGTC
AGCGGGGTAGGGATCAGCCATTCCCTGATCGAACGCCTCATGAAGGCATA
TCCGGGTATTATTGCCGGCATAAAGGACTCGGCGGGGGACTGGAAACACA
CAGCATCCCTGATCACCCATTTCGCCCGTTCAGGCAAAGGTCTCGCGACG
GAGGGGAGCGGTGCCTACCTCCGGGTATTCGCGGGGAGCGAAGCCTTCCT
CCTCCGCACACTTCGGGCAGGGGGGCAAGGGTGCATCTCCGCCACTGCCA
ACGTGAATCCCGCCCGGATTGTCGAGCTCTACCACCAACACGAGACCAGC
CAGGCAGACCGCCTCCAGGACGCGTGCCAGCGCCTTCGAGAAGCTTTCCC
TCCCCATGCACTCATCCCTTCCATGAAAGCGACCATAGCGCACTTCACGC
ACGACAAAGGCTGGGAGCGGGTGCGCCCTCCCCTGGTGGAACTTGAGGAG
GAGGAAAAGGAAAGTTTGCTGCGGCGATTGCACGAGTTGAAATTCAAGAT
GCCAGACCCGGGCACCTGCTAAGCGTTGGGTTGATACCGGCGAGGCGTTC
TGAACCAGGGGATCTCATTCATTTCGGTGCAAAATGTAAATCAGGCATGA
TACCACAAAGCAATCAGACCACTCGACCAAGCCACCCCTGCTCGTTGCTT
TCTCAGAGAGGCACTGGGAGGGATGAAAGGGCATTCGCGTTGGCATTGGA
CACACGTCGGTCCCCGACAGCCACCTCCCGAATGCCTCCCCGCCGGCCCC
AGAGACACGCCTACCTGCGCCCGTCCCTAATTCCCTCTCCTTCTTGGTCA
TTCATCATCTGAAACGCGTTTTTATTTCTAAATCTCGAGCTGAAAGTCGG
AATTTTCAAGGCCGCTGGCACCAAAAGCAGCGGGGACTCCCTCCCATAAC
CATGGTGTGCTCTCGTCGAGAAAAGAATCGTTGCATCCAACAACAAATAA
GCATGAAAGAATGGGCAAATTCAGATTCCAAACACAGTGTAAAGC
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protein sequence of rna9882

>rna9882-protein ID=rna9882-protein|Name=rna9882|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MAAPTPTAIATHIEETHVIPSAITEVWPVIKGMKMETWWNLVDKATPDSP
GTGLALGSTYTLHFKDGTKWGIVIVEASELHK
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mRNA from alignment at KK037257.1:48600..49654+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9882 ID=rna9882|Name=rna9882|organism=Nannochloropsis gaditana|type=mRNA|length=1055bp|location=Sequence derived from alignment at KK037257.1:48600..49654+ (Nannochloropsis gaditana)
GTTacatcaacctcctccttccaaggaCTGGACGTTGTCGAGACTGAAGA
CAGGCAAGAAAATCAAAAAGCGAGCCACCATCCACCGATTCCTTGCATTC
GTTTTCCGCTACACATCGCATTCATCTGTCGAAGACCGTCCAGCCGCGTG
TCAATTCATTATCCTCCCTCACgaggcaacctcctccctccacctcccct
tccagccacAGACCCGTCCTGTAATTCGAATAGCATTATGGCCGCACCCA
CGCCCACTGCCATCGCCACCCATATCGAGGAGACACATGTGATTCCTAGC
GCTATTACTGAAGGTAGAGGCGGGAGGATAAGGGCACGCACCTGAAGACA
TCAGTCTATCATCACTGTAAAGGATGCTACCTCATACCATTCCCTTTCTC
GCTCTTGACCCATTATCCCGCGCCCTTTTCGATTTTTCTCCGTTTCAAAT
AGTCTGGCCAGTCATCAAAGGAATGAAGATGGAGACGTGGTGGAATCTGG
TAGACAAGGTATTTCACTCCTGTCCAAGGACAAgctgtagggagggaggc
cagggggaggtgaCAGAGACCTTGACGGGTGTACGCGAGCAATTCAGTCA
CAATCTGCAACGCTTATGATAGCTTTCGTTTGTCTTCCCTCACATAACGC
TTATGATAGCATCCTTTCGTTCATCCGCACATACCTCTAAATCATGCCAG
GCCACCCCTGATTCCCCTGGCACCGGCTTGGCCTTGGGCAGCACCTACAC
GCTGCACTTCAAGGACGGCACCAAGTGGGGCATTGTCATCGTGGAGGCCA
GCGAGCTCCacaagtgagggagggaaagggacaggaagggggaaagcctG
CATTTCGAGAACCGGGTCACTGGTGACGCGTCTccttgtcttcttccttt
ctctatGTTTGCGCCAGAAATCTCATTTCGTCTTTTTCTCGCGCGCCCTC
TCacatcccctcttccttcacgtACAGATTTGTGTCCTTCGAGATTATCA
GCAGCAACCCCAGcatctccgtctcctccgccttgcacACGGTCACTTGC
AAagt
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Coding sequence (CDS) from alignment at KK037257.1:48600..49654+

>rna9882 ID=rna9882|Name=rna9882|organism=Nannochloropsis gaditana|type=CDS|length=747bp|location=Sequence derived from alignment at KK037257.1:48600..49654+ (Nannochloropsis gaditana)
ATGGCCGCACCCACGCCCACTGCCATCGCCACCCATATCGAGGAGACACA
TGTGATTCCTAGCGCTATTACTGAAGTCTGGCCAGTCATCAAAGGAATGA
AGATGGAGACGTGGTGGAATCTGGTAGACAAGGCCACCCCTGATTCCCCT
GGCACCGGCTTGGCCTTGGGCAGCACCTACACGCTGCACTTCAAGGACGG
CACCAAGTGGGGCATTGTCATCGTGGAGGCCAGCGAGCTCCacaagtgaA
TGGCCGCACCCACGCCCACTGCCATCGCCACCCATATCGAGGAGACACAT
GTGATTCCTAGCGCTATTACTGAAGTCTGGCCAGTCATCAAAGGAATGAA
GATGGAGACGTGGTGGAATCTGGTAGACAAGGCCACCCCTGATTCCCCTG
GCACCGGCTTGGCCTTGGGCAGCACCTACACGCTGCACTTCAAGGACGGC
ACCAAGTGGGGCATTGTCATCGTGGAGGCCAGCGAGCTCCacaagtgaAT
GGCCGCACCCACGCCCACTGCCATCGCCACCCATATCGAGGAGACACATG
TGATTCCTAGCGCTATTACTGAAGTCTGGCCAGTCATCAAAGGAATGAAG
ATGGAGACGTGGTGGAATCTGGTAGACAAGGCCACCCCTGATTCCCCTGG
CACCGGCTTGGCCTTGGGCAGCACCTACACGCTGCACTTCAAGGACGGCA
CCAAGTGGGGCATTGTCATCGTGGAGGCCAGCGAGCTCCacaagtga
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Synonyms
Publications