EWM20823.1, cds9851 (CDS) Nannochloropsis gaditana

Overview
NameEWM20823.1
Unique Namecds9851
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:48837..48912 +
Alignment locationKK037257.1:49052..49107 +
Alignment locationKK037257.1:49300..49416 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20823.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100835g3.4731.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:48837..48912 +
KK037257.1supercontigKK037257.1:49052..49107 +
KK037257.1supercontigKK037257.1:49300..49416 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
Homology
[Close]
BLAST of EWM20823.1 vs. NCBI_GenBank
Match: gi|553191831|ref|XP_005855466.1| (hypothetical protein NGA_0139600 [Nannochloropsis gaditana CCMP526] >gi|422293595|gb|EKU20895.1| hypothetical protein NGA_0139600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 167.548 bits (423), Expect = 1.053e-51
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 
Query:    1 MAAPTPTAIATHIEETHVIPSAITEVWPVIKGMKMETWWNLVDKATPDSPGTGLALGSTYTLHFKDGTKWGIVIVEASELHK 82
            MAAPTPTAIATHIEETHVIPSAITEVWPVIKGMKMETWWNLVDKATPDSPGTGLALGSTYTLHFKDGT+WGIVIVEASELHK
Sbjct:    1 MAAPTPTAIATHIEETHVIPSAITEVWPVIKGMKMETWWNLVDKATPDSPGTGLALGSTYTLHFKDGTQWGIVIVEASELHK 82
[Close]
BLAST of EWM20823.1 vs. NCBI_GenBank
Match: gi|585100745|gb|EWM20823.1| (hypothetical protein Naga_100835g3 [Nannochloropsis gaditana])

HSP 1 Score: 164.466 bits (415), Expect = 1.693e-51
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 
Query:    1 MAAPTPTAIATHIEETHVIPSAITEVWPVIKGMKMETWWNLVDKATPDSPGTGLALGSTYTLHFKDGTKWGIVIVEASELHK 82
            MAAPTPTAIATHIEETHVIPSAITEVWPVIKGMKMETWWNLVDKATPDSPGTGLALGSTYTLHFKDGTKWGIVIVEASELHK
Sbjct:    1 MAAPTPTAIATHIEETHVIPSAITEVWPVIKGMKMETWWNLVDKATPDSPGTGLALGSTYTLHFKDGTKWGIVIVEASELHK 82
The following BLAST results are available for this feature:
BLAST of EWM20823.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|553191831|ref|XP_005855466.1|1.053e-5198.78hypothetical protein NGA_0139600 [Nannochloropsis ... [more]
gi|585100745|gb|EWM20823.1|1.693e-51100.00hypothetical protein Naga_100835g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9882rna9882Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications