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Properties
| Property Name | Value |
|---|
| Product | Zn(2)-C6 fungal-type DNA-binding domain protein |
| Orig transcript id | gnl|cribi|Naga_100314g3.5184.mrna |
| Orig protein id | gnl|cribi|Naga_100314g3.5184 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037257.1 | supercontig | KK037257.1:35316..38369 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9876 ID=rna9876|Name=rna9876|organism=Nannochloropsis gaditana|type=mRNA|length=852bp
ATGCTCGTTGCTCCCGTCGCTGTTGCATTTCCTCCAGCTCCCTACAAGCG
ATGCGCCCCTTCTCTTCCGCCAACCAGTTTGAGCGAGCACAGAAGGCCTC
TTTCTTCTGCTCACAGTGGTTTTCATCCCTGCAAGGTCATTGTGTCCAGC
TCGAGGAACATCACTTTTTATGACCGAAGGGATAAAAGCTTTCCCCTGTG
TCTCGCCCGGGCGGAGGCGAGGTTTGCGCTCAAGGAAGAAACACTCCAGT
CCGCGGTGCTGACAATGAGAGCAAGGGAGCAAGCCGTCACATTTCACTCT
TTTGTGTCTGCATTGCTCGCAGGATTTTCGAACCGCGTGCTTCTTCCTTC
GGTGAAGGGAAAAGATGGGCTGGGCGCTGGCAAGACCACCAACCACAGCC
TCGCGTGCGCAGTTTTGCTCTCCAATCACCTGGCCAAGGATATCGAGGAA
AGCCTTCCAGCCACACACGTCTCTAGGCACCCGCCCTCCTCCCTATGGTC
AGGGGGGTGGCCGTGGGTACCGAAGTCGTCACCGGCTGTCTTTCCAGTCT
TGCTGCTCTCTTTACTGCTACAAGCGTCCCTACTTCTACTCGTATTGTCC
TTGACAGAGTCACTCCAATGCGTCAAGCCGAAGGGGCTGGCGGATACATT
GCTGTCCTCTGATCGACGGCGCCTCCCTTCACGGAGACTGGTGCTGCGCA
AGCGCATATCACGAGTAGCCACATTTATGAGCTTGACGGTTAAATTCAGC
GAAATGTTTAGAACTTTTTTTAGAACTTTGAATTGTGCTGTCTTTGGGAC
ATCCCTTTTTTTGGGACATCCCTCTGAATGCTATCGATTGCGTAAATGCT
GA back to topprotein sequence of rna9876 >rna9876-protein ID=rna9876-protein|Name=rna9876|organism=Nannochloropsis gaditana|type=polypeptide|length=660bp
MDNLEYRRVVRVAHLGADNKKQEEVCEVSVVVRPLLSSNLTEQQLLQIVK
TVVSSINSGSERPATAEGSCGSTGNEVTLSNPTQVPWTRPFSARPVEINN
VGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGR
DREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSA
DAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEY
RQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQST
YSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLD
TEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSP
RTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPA
EAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRAR
PSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHE
REESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAG
STSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRR
LDSMNASNQG back to topmRNA from alignment at KK037257.1:35316..38369- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9876 ID=rna9876|Name=rna9876|organism=Nannochloropsis gaditana|type=mRNA|length=3054bp|location=Sequence derived from alignment at KK037257.1:35316..38369- (Nannochloropsis gaditana)
GTTCTAGCTATGAGGCTGCTATTCCCGGGCTCACATATTGGGATTGCCGA
CGGCATCGCCTTTTGCACACCGTCGTATGAAGGCATGGTGTATCCTTCTC
ATTTCTTGCTTATGGGTGATGTGTGCGAGCTTGTAAAGTTCAATGGGCCT
TGCTTACTCTTTAGGATCACTTTGCGTCAGGTGTGCAGACCTCCGAGTTG
ATGGCTTTTCACGATAAAAACAATTACCGAGGGTGAAGCCATTTGTGCAA
TCTTTCTTCTGAAAGCCATCAGCACTACGACACTGGACAACAACACTGTG
AGCGTTTCTGACCACATGCGGATTAGTTTAGAAATAAGGCGGGCAATGAA
GCACACTAGCATTGAAAGGCTGTGGTAAGCATGGACAATTTGGAATACAG
GAGAGTAGTTCGAGTGGCGCACTTGGGAGCCGACAACAAGAAACAAGAAG
AGGTTTGCGAAGTAAGCGTGGTGGTGAGACCGTTACTATCATCGAATCTA
ACTGAACAACAACTGCTCCAAATCGTCAAAACTGTCGTATCCTCGATCAA
TTCGGGTTCCGAGCGACCAGCAACGGCGGAAGGTAGCTGTGGCAGGTAAG
CTACATGCTGGAGAGAAGCCTCTGTCCGCATTGAGAGCGAACCATGCACG
TATATTGCATGTCAGCTTCCACGTGACCTGTCTCACCTTATAAACGCTCA
GAAAGGCTACAATGGTTTTAGGGGAAGGGATGAGGATAGAAGTAGACTAT
GTTTTTGGCATTACAAATCGCAAGATTCAAGATTTTCCCGCACTATGACG
CAGCAAATTAGGCTAGTTCATGCTTCTTGCTCAATATTCACCAAACAGTG
CAACCTCCCCCTCAAGCACTGGCAATGAAGTGACGTTGTCGAACCCAACT
CAGGTGCCATGGACGCGGCCTTTCTCGGCAAGGCCGGTCGAGATAAATAA
TGTTGGCAGCCATGTTCACGTAGACACGTTGCTAGTTATAGAGGATGAGC
AAAGGGCAAATGCAAATCAGGGGCTTGATGCTACCGAAGACATCATCCAT
GCTGATCGACCCCGCAAGGAGAATACTTTGGAGAGTAATCGCCTTGGCCG
TGACAGAGAGGTGTGCGTCCAAGAGAAGGAATTTCAGGATGACGAGCTGC
TTTCATGTCAGAGGCTCGAAGGCTCGACATCAATGCTGAACATTGGTTCA
ATGGGGAAGCTACGTTCGCATGCGGGTATTACTCTGTCAAGAAGCAGCGC
GGACGCGGGTGGCGAGGGGCTTCGTCGTGGGCGAAAAGGTGCGTCTTTGA
GCACGCTCAAATCTTGCGAATTTTGCTCGCTTAAAAAAATGAAATGCGAC
GCAAAACTACCCTGCAAAGCTTGTCTTACGCGGAATCAAATTTGCGAGTA
CCGACAGCGGAAGAGTCGTCTCCCTCGAGGCAAGAGGTCTTTCTCCCCTC
CTAAGATTATCAAGCGGGCAGGTCCTCCCTATGTGCCGGCCGCGGTGGCT
TCCAAGCCGGTCGTTTCCTCTCCTACTATCGGCTTACTTCCTCAATCGAC
ATATAGCAGAGGAGGATCGACAAGCGCGCTTGCCATAGGACTCAGGGAAA
GACGCGAAGGTGGCTTGGCCGCGAGCGTGCAAGAATTTGCAAGCCGCGAG
CAATTCGCAGAAACAGATCCCAGGGCGTATTTCCATAGGAGAGTACTCGA
CACTGAGGTCATGAATAGAGAGGATCATGCCGTCCTGACAAATGACAGTG
CTCCTGGGGCCTCCCTCCCTTTGCGAGATGGAACGTCGGTGCCAAGAAGT
GACGTCATCAGGACAAGGCTTTCTGGTAAGGCAGCTATTCACCCATCGCC
AAGAACACGGCAGCAGGCGAGAGGGCAAACAGAGAATGTCAGTGGGCATC
GCGACGTAAACGAGGAGAGTATGGAACTATCTCTTCCACGCTACCGGGGG
GGGCACCCTTCTCTCTCTCACTCCCATTACTCCCATCAATCACTTCCTGC
GGAGGCCATAGACATGGCGGATCGCGAGGTTGCTGCGTTGACAGAGATGA
CACCCACCCTGATGTGGAGCGTAAAGGATGAAAATCCCCCTATCGTATCA
GGCCACATGACCGGGGCTCCAGAGGAGGACAGCGGCGGTGGAAGGGCACG
GCCTAGCCCGCAACGCACCATCGGTGTGGAGGACGGCCCCCCTACATCCC
ACCACACATTTTCTAGCATTGCAGCTTTCGAACCGGTAGATAGATCGGCA
ATGACTCCGAGGACTCGTCAGAAGGAGCATCAGCGCTCTACCAAGCACGA
GCGGGAGGAATCAGTCGAAAGAGACGACATTTGGGAGGGTGAACAATACC
AGGACCAGACGAGACATTTGCAACAGTCGAACGATGAATCTGAGCGTTCG
GATCACCAGAGAGGTGTACAATGGCAGTTTTCAAATCCTAGCTCAGCCGG
CTCCACCTCCCCTTCCTCTTTCATTCTGTCATTCCCGACTACTCAAGATA
TGAATGAAAATGTGAACACATTTCGAGCACGGGAATTGATCACAGACGCA
AATGATAACGGCCTGCGAGTGGAAATCTCTTTTCTTGATCCTTGGAGAAG
ACTGGATTCCATGAACGCGTCAAATCAAGGCTGAGGTCGTGGTATCTCAA
ATGGAGTGCGGACGGTCGGATTTGTTGGAATTAGCGGAAGTCGGAGCTCT
TACGACAATGAAAAGAAAGTAAGGAGAGTAAGATGTATTGCAATTCCGGC
ACACCATCTCGTTGTTTAACTCTTTGAAACGCGGAATATATCTAGATATC
AATTACACGTGTCAAAAGACGCTTGCAAACTGTATTGGAGGAAGATACCC
TGCTCTGTCTATTTCACCTTTTTGTGTGCCAAAAAGTCATCCCTTCGCAT
CGTAAAAAGCGATTTATAAACCAAACTAAAATAAGAACGGATACAGGAAG
GTGCAAGACAAAATTAAATACGGCACTTTTGATACAATTCAGAATATCAT
TTTTGCAAGTCAAAGGACGCACGCGCCTTTTTCAATTATCGATTAACTCG
GCCC back to topCoding sequence (CDS) from alignment at KK037257.1:35316..38369- >rna9876 ID=rna9876|Name=rna9876|organism=Nannochloropsis gaditana|type=CDS|length=3966bp|location=Sequence derived from alignment at KK037257.1:35316..38369- (Nannochloropsis gaditana)
CACTGGCAATGAAGTGACGTTGTCGAACCCAACTCAGGTGCCATGGACGC
GGCCTTTCTCGGCAAGGCCGGTCGAGATAAATAATGTTGGCAGCCATGTT
CACGTAGACACGTTGCTAGTTATAGAGGATGAGCAAAGGGCAAATGCAAA
TCAGGGGCTTGATGCTACCGAAGACATCATCCATGCTGATCGACCCCGCA
AGGAGAATACTTTGGAGAGTAATCGCCTTGGCCGTGACAGAGAGGTGTGC
GTCCAAGAGAAGGAATTTCAGGATGACGAGCTGCTTTCATGTCAGAGGCT
CGAAGGCTCGACATCAATGCTGAACATTGGTTCAATGGGGAAGCTACGTT
CGCATGCGGGTATTACTCTGTCAAGAAGCAGCGCGGACGCGGGTGGCGAG
GGGCTTCGTCGTGGGCGAAAAGGTGCGTCTTTGAGCACGCTCAAATCTTG
CGAATTTTGCTCGCTTAAAAAAATGAAATGCGACGCAAAACTACCCTGCA
AAGCTTGTCTTACGCGGAATCAAATTTGCGAGTACCGACAGCGGAAGAGT
CGTCTCCCTCGAGGCAAGAGGTCTTTCTCCCCTCCTAAGATTATCAAGCG
GGCAGGTCCTCCCTATGTGCCGGCCGCGGTGGCTTCCAAGCCGGTCGTTT
CCTCTCCTACTATCGGCTTACTTCCTCAATCGACATATAGCAGAGGAGGA
TCGACAAGCGCGCTTGCCATAGGACTCAGGGAAAGACGCGAAGGTGGCTT
GGCCGCGAGCGTGCAAGAATTTGCAAGCCGCGAGCAATTCGCAGAAACAG
ATCCCAGGGCGTATTTCCATAGGAGAGTACTCGACACTGAGGTCATGAAT
AGAGAGGATCATGCCGTCCTGACAAATGACAGTGCTCCTGGGGCCTCCCT
CCCTTTGCGAGATGGAACGTCGGTGCCAAGAAGTGACGTCATCAGGACAA
GGCTTTCTGGTAAGGCAGCTATTCACCCATCGCCAAGAACACGGCAGCAG
GCGAGAGGGCAAACAGAGAATGTCAGTGGGCATCGCGACGTAAACGAGGA
GAGTATGGAACTATCTCTTCCACGCTACCGGGGGGGGCACCCTTCTCTCT
CTCACTCCCATTACTCCCATCAATCACTTCCTGCGGAGGCCATAGACATG
GCGGATCGCGAGGTTGCTGCGTTGACAGAGATGACACCCACCCTGATGTG
GAGCGTAAAGGATGAAAATCCCCCTATCGTATCAGGCCACATGACCGGGG
CTCCAGAGGAGGACAGCGGCGGTGGAAGGGCACGGCCTAGCCCGCAACGC
ACCATCGGTGTGGAGGACGGCCCCCCTACATCCCACCACACATTTTCTAG
CATTGCAGCTTTCGAACCGGTAGATAGATCGGCAATGACTCCGAGGACTC
GTCAGAAGGAGCATCAGCGCTCTACCAAGCACGAGCGGGAGGAATCAGTC
GAAAGAGACGACATTTGGGAGGGTGAACAATACCAGGACCAGACGAGACA
TTTGCAACAGTCGAACGATGAATCTGAGCGTTCGGATCACCAGAGAGGTG
TACAATGGCAGTTTTCAAATCCTAGCTCAGCCGGCTCCACCTCCCCTTCC
TCTTTCATTCTGTCATTCCCGACTACTCAAGATATGAATGAAAATGTGAA
CACATTTCGAGCACGGGAATTGATCACAGACGCAAATGATAACGGCCTGC
GAGTGGAAATCTCTTTTCTTGATCCTTGGAGAAGACTGGATTCCATGAAC
GCGTCAAATCAAGGCTGAATGGACAATTTGGAATACAGGAGAGTAGTTCG
AGTGGCGCACTTGGGAGCCGACAACAAGAAACAAGAAGAGGTTTGCGAAG
TAAGCGTGGTGGTGAGACCGTTACTATCATCGAATCTAACTGAACAACAA
CTGCTCCAAATCGTCAAAACTGTCGTATCCTCGATCAATTCGGGTTCCGA
GCGACCAGCAACGGCGGAAGGTAGCTGTGGCAGCACTGGCAATGAAGTGA
CGTTGTCGAACCCAACTCAGGTGCCATGGACGCGGCCTTTCTCGGCAAGG
CCGGTCGAGATAAATAATGTTGGCAGCCATGTTCACGTAGACACGTTGCT
AGTTATAGAGGATGAGCAAAGGGCAAATGCAAATCAGGGGCTTGATGCTA
CCGAAGACATCATCCATGCTGATCGACCCCGCAAGGAGAATACTTTGGAG
AGTAATCGCCTTGGCCGTGACAGAGAGGTGTGCGTCCAAGAGAAGGAATT
TCAGGATGACGAGCTGCTTTCATGTCAGAGGCTCGAAGGCTCGACATCAA
TGCTGAACATTGGTTCAATGGGGAAGCTACGTTCGCATGCGGGTATTACT
CTGTCAAGAAGCAGCGCGGACGCGGGTGGCGAGGGGCTTCGTCGTGGGCG
AAAAGGTGCGTCTTTGAGCACGCTCAAATCTTGCGAATTTTGCTCGCTTA
AAAAAATGAAATGCGACGCAAAACTACCCTGCAAAGCTTGTCTTACGCGG
AATCAAATTTGCGAGTACCGACAGCGGAAGAGTCGTCTCCCTCGAGGCAA
GAGGTCTTTCTCCCCTCCTAAGATTATCAAGCGGGCAGGTCCTCCCTATG
TGCCGGCCGCGGTGGCTTCCAAGCCGGTCGTTTCCTCTCCTACTATCGGC
TTACTTCCTCAATCGACATATAGCAGAGGAGGATCGACAAGCGCGCTTGC
CATAGGACTCAGGGAAAGACGCGAAGGTGGCTTGGCCGCGAGCGTGCAAG
AATTTGCAAGCCGCGAGCAATTCGCAGAAACAGATCCCAGGGCGTATTTC
CATAGGAGAGTACTCGACACTGAGGTCATGAATAGAGAGGATCATGCCGT
CCTGACAAATGACAGTGCTCCTGGGGCCTCCCTCCCTTTGCGAGATGGAA
CGTCGGTGCCAAGAAGTGACGTCATCAGGACAAGGCTTTCTGGTAAGGCA
GCTATTCACCCATCGCCAAGAACACGGCAGCAGGCGAGAGGGCAAACAGA
GAATGTCAGTGGGCATCGCGACGTAAACGAGGAGAGTATGGAACTATCTC
TTCCACGCTACCGGGGGGGGCACCCTTCTCTCTCTCACTCCCATTACTCC
CATCAATCACTTCCTGCGGAGGCCATAGACATGGCGGATCGCGAGGTTGC
TGCGTTGACAGAGATGACACCCACCCTGATGTGGAGCGTAAAGGATGAAA
ATCCCCCTATCGTATCAGGCCACATGACCGGGGCTCCAGAGGAGGACAGC
GGCGGTGGAAGGGCACGGCCTAGCCCGCAACGCACCATCGGTGTGGAGGA
CGGCCCCCCTACATCCCACCACACATTTTCTAGCATTGCAGCTTTCGAAC
CGGTAGATAGATCGGCAATGACTCCGAGGACTCGTCAGAAGGAGCATCAG
CGCTCTACCAAGCACGAGCGGGAGGAATCAGTCGAAAGAGACGACATTTG
GGAGGGTGAACAATACCAGGACCAGACGAGACATTTGCAACAGTCGAACG
ATGAATCTGAGCGTTCGGATCACCAGAGAGGTGTACAATGGCAGTTTTCA
AATCCTAGCTCAGCCGGCTCCACCTCCCCTTCCTCTTTCATTCTGTCATT
CCCGACTACTCAAGATATGAATGAAAATGTGAACACATTTCGAGCACGGG
AATTGATCACAGACGCAAATGATAACGGCCTGCGAGTGGAAATCTCTTTT
CTTGATCCTTGGAGAAGACTGGATTCCATGAACGCGTCAAATCAAGGCTG
AATGGACAATTTGGAATACAGGAGAGTAGTTCGAGTGGCGCACTTGGGAG
CCGACAACAAGAAACAAGAAGAGGTTTGCGAAGTAAGCGTGGTGGTGAGA
CCGTTACTATCATCGAATCTAACTGAACAACAACTGCTCCAAATCGTCAA
AACTGTCGTATCCTCGATCAATTCGGGTTCCGAGCGACCAGCAACGGCGG
AAGGTAGCTGTGGCAG back to top
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