EWM20830.1, cds9845 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20830.1
Unique Name	cds9845
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037257.1:37775..37989 -
Alignment location	KK037257.1:35736..37503 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20830.1
Product	Zn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript id	gnl\|cribi\|Naga_100314g3.5184.mrna
Gbkey	CDS
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:37775..37989 -
KK037257.1	supercontig	KK037257.1:35736..37503 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0009058	biosynthetic process
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity
GO:0003677	DNA binding
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270	zinc ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR001138	Zn2-C6_fun-type_DNA-bd

Homology

[Close]

BLAST of EWM20830.1 vs. NCBI_GenBank
Match: gi|585100754|gb|EWM20830.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1362.44 bits (3525), Expect = 0.000e+0
Identity = 660/660 (100.00%), Postives = 660/660 (100.00%), Query Frame = 0

Query:    1 MDNLEYRRVVRVAHLGADNKKQEEVCEVSVVVRPLLSSNLTEQQLLQIVKTVVSSINSGSERPATAEGSCGSTGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG 660
            MDNLEYRRVVRVAHLGADNKKQEEVCEVSVVVRPLLSSNLTEQQLLQIVKTVVSSINSGSERPATAEGSCGSTGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG
Sbjct:    1 MDNLEYRRVVRVAHLGADNKKQEEVCEVSVVVRPLLSSNLTEQQLLQIVKTVVSSINSGSERPATAEGSCGSTGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG 660

[Close]

BLAST of EWM20830.1 vs. NCBI_GenBank
Match: gi|585100753|gb|EWM20829.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1355.89 bits (3508), Expect = 0.000e+0
Identity = 660/666 (99.10%), Postives = 660/666 (99.10%), Query Frame = 0

Query:    1 MDNLEYRRVVRVAHLGADNKKQEEVCEVSVVVRPLLSSNLTEQQLLQIVKTVVSSINSGSERPATAEGSCGS------TGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG 660
            MDNLEYRRVVRVAHLGADNKKQEEVCEVSVVVRPLLSSNLTEQQLLQIVKTVVSSINSGSERPATAEGSCGS      TGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG
Sbjct:    1 MDNLEYRRVVRVAHLGADNKKQEEVCEVSVVVRPLLSSNLTEQQLLQIVKTVVSSINSGSERPATAEGSCGSATSPSSTGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG 666

[Close]

BLAST of EWM20830.1 vs. NCBI_GenBank
Match: gi|553182432|ref|XP_005853729.1| (fungal zn binuclear cluster domain containing protein [Nannochloropsis gaditana CCMP526] >gi|422295332|gb|EKU22631.1| fungal zn binuclear cluster domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1250.73 bits (3235), Expect = 0.000e+0
Identity = 624/666 (93.69%), Postives = 635/666 (95.35%), Query Frame = 0

Query:    1 MDNLEYRRVVRVAHLGADNKKQEEVCEVSVVVRPLLSSNLTEQQLLQIVKTVVSSINSGSERPATAEGSCGS------TGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG 660
            MDNLEYRRVVRVAHLGADNKKQE+VCEVSVVVRP LSSNLTEQQLLQIVKTVVSSINSGSERPATAEGSCGS      TGNEVTLSNPTQVPWTRPFSA PV+INNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRL GSTSMLNIGSMGKLRSHAG TLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCD  LPCKACLTRNQICEYRQRKSRLPRGKRS SPPKIIKRAGPPYVPAAVASKP VS PTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFA+TDPRAYF RRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRT LSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELS PRY+G        H+SH SLPAE ID+ADREVAALTEMTPTLMWSVKDENP I+SGHM GAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQ+RHLQQSND+SERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTT+DMNENVNTFRAREL TDANDNGLRV+ISFLDPWRRLDSMNASNQG
Sbjct:    1 MDNLEYRRVVRVAHLGADNKKQEDVCEVSVVVRPFLSSNLTEQQLLQIVKTVVSSINSGSERPATAEGSCGSATSPSSTGNEVTLSNPTQVPWTRPFSAGPVKINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLAGSTSMLNIGSMGKLRSHAGTTLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDGNLPCKACLTRNQICEYRQRKSRLPRGKRSSSPPKIIKRAGPPYVPAAVASKPDVSPPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFADTDPRAYFRRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTWLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSRPRYQG-------MHHSHLSLPAEVIDVADREVAALTEMTPTLMWSVKDENPSILSGHMIGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQSRHLQQSNDDSERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTEDMNENVNTFRARELTTDANDNGLRVKISFLDPWRRLDSMNASNQG 659

[Close]

BLAST of EWM20830.1 vs. NCBI_GenBank
Match: gi|585100755|gb|EWM20831.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1219.91 bits (3155), Expect = 0.000e+0
Identity = 590/592 (99.66%), Postives = 590/592 (99.66%), Query Frame = 0

Query:   69 SCGSTGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG 660
            S  STGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG
Sbjct:   13 SPSSTGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNASNQG 604

The following BLAST results are available for this feature:

BLAST of EWM20830.1 vs. NCBI_GenBank

BLAST of EWM20830.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4


Match Name	E-value	Identity	Description
gi\|585100754\|gb\|EWM20830.1\|	0.000e+0	100.00	Zn(2)-C6 fungal-type DNA-binding domain protein [N...	[more]
gi\|585100753\|gb\|EWM20829.1\|	0.000e+0	99.10	Zn(2)-C6 fungal-type DNA-binding domain protein [N...	[more]
gi\|553182432\|ref\|XP_005853729.1\|	0.000e+0	93.69	fungal zn binuclear cluster domain containing prot...	[more]
gi\|585100755\|gb\|EWM20831.1\|	0.000e+0	99.66	Zn(2)-C6 fungal-type DNA-binding domain protein [N...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9876	rna9876	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications