rna987, rna987 (mRNA) Nannochloropsis gaditana

Overview
Namerna987
Unique Namerna987
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1539
Alignment locationCM002456.1:906569..907866 -

Link to JBrowse

Properties
Property NameValue
Productcdp-diacylglycerol--glycerol-3-phosphate 3
Orig transcript idgnl|cribi|Naga_100114g5.2470.mrna
Orig protein idgnl|cribi|Naga_100114g5.2470
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:906569..907866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100114g5gene950Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna987rna987-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29685.1cds986Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna987 ID=rna987|Name=rna987|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp
ATGCCCTTCGGACGCTTTTCAACGCCCCCACCGCCACCGCCGGCTCCAGC
AACCACAGATCTAGCTTTTCTTACTGCGATGATTAGCACAGCTGTGGTCG
GCCTACTTGTAATACAATGCATATTCATCAGCCGACGGAAGGCACGGGCC
CTGCAGCCGTCCCCTGCTGTTGTTCGAAGGAGCATGAGTTTTTGCTCGGC
GGCATGCGCGGACGGACCCATGCCAGATCATGCAAAGATGAGCCCGCAAG
ATCCCATAATAAATGCAGTGGTGCTTTTTGAAGGCGAAGCGCCCACGCGT
GCGGCTGTGGAGACGGCTATTCTGCCCTTGTTCAAGTTTGAACGCTTTCG
CTCTCGCAAGGTAAAGATCCACGACGAGTGGTACTGGGAGCTCTTGCCGT
CCTTTGATACGAAGATGCATGTCATTGAAGAAAGCTTTCAAGGTGTCGAC
ATGGACGATCTCTTTCGCCAGTTGGAGGTGTGGTCGAAGAAGCCCCTGCA
TGTCCCCACGGAGGCACCTCCCTTCGAATTTGCCTTGCTCCGGAACGAAA
GCCGGCGAGGACCCTCCGCCGTCATTTGTCGCGTCAACCACGCCATTGGA
GATGGCGTCTCCTTGGCCAACTTGATTCCCTACGTTTTCAAAGGCCTTGA
CGGCCAGTCCCTGCCCACGAAGGAGAAATTCTCCCGCCGAGAGACCGGGT
TCATGCCCACACTCCGCAATCCCTTCACGCTCCTGGCCTCTTTCTTCAAA
GTCCTTGGGACACCCTCGACCGCCTTTGACACGGACGTCGGCCTGACGAT
TCCCGACAAGAAGCAAATCACCTTTACGGGCCGCCGATCTATCGTCCGGA
TTCCCACAGTCAAACTCTCCTTCATCAAGAGCGTCAAAAACGCAGCGGGC
GTGACCGTCAATGACGTTGTTTTTGCAGCCCTGGCGGGCGCCGTGCACCG
GCTTCGTGTCGCTATGCAAGACCCCGTCATGACGGACCCCCTTTCTGGCT
CCAAGGTGCGCACACGGGCCTTGATGCCTGTGGCTTTGCCCCGCAAAGTG
GGGGACACGGTCAGGGGCCTCCGGAACAAGTGGAGCTTCGCCTCGGTGAA
CATGCCCATCGGAGTCAAGGGCAGTCTAGAGCGACTCCATGCTGCGCATG
CCACCACCACCGCCTTGAAGAACAGCCCCATCGTCATGGTCCAGAACATG
GTCGAGACCCTGGTGGGGGCGCGACTGCCCTGGTCAGTGGCGAAGCAGAC
TGCTTACGACACCTTCGTGCGGCACACATTTGTATTCAGCAACCTCCCTG
GCCCTGATGTGCCCATCACATTCGCAGGCAAGGAGGTGTCGGGCTTGTAC
ATGGTGTTCGCCAATCTGCTTCCTCAGGTCGGTGCCCTGTCGCTGAACGG
GCGGATCTTCACTTGCCTGGTGCTGGATGAAGAGGTCACGCCGGGGGCGC
GGGATTTGGGCAAATATTTCATCGATGAGTTGATGGACTTGGCGGATCGG
ACGGGTTTGAATGTTAAGAAGGAGGACATTTTGGGATGA
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protein sequence of rna987

>rna987-protein ID=rna987-protein|Name=rna987|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MSVRSQKVIGWEATVEPPWRLHLLAPTNMSSRAASSLVLSLRLRGPSSRL
RLLPVLGHGVHSLAGKPQRLHHFKGFHLQTSFLPSNSQYLHVPPQAVKPE
ARLKEDGSFASEGSDPSKTTIKRPPSSRETMWTVPNIITLARIISSPLLA
GLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVL
VAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDT
ASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLC
WLTGGTTVGSGLTYLAGDGTGSLLRKRGKKEGDARMKATAAGRKIDEQRR
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mRNA from alignment at CM002456.1:906569..907866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna987 ID=rna987|Name=rna987|organism=Nannochloropsis gaditana|type=mRNA|length=1298bp|location=Sequence derived from alignment at CM002456.1:906569..907866- (Nannochloropsis gaditana)
ATGTCCGTGCGGTCCCAAAAAGTAATTGGTTGGGAGGCTACCGTGGAACC
GCCGTGGAGACTTCATCTATTAGCTCCCACAAATATGTCCTCCAGGGCTG
CGTCGTCACTAGTACTATCCTTGCGGCTCCGTGGACCCTCTTCCCGTCTA
AGACTACTTCCAGTCCTCGGTCATGGTGTCCATTCCCTCGCGGGAAAGCC
GCAGCGGCTTCACCATTTTAAGGGGTTTCATCTGCAGACATCTTTTTTGC
CCAGTAACAGCCAGTACCTGCACGTGCCTCCACAAGCAGTCAAACCGGAG
GCGAGGTTGAAGGAAGATGGATCGTTCGCCAGCGAAGGATCAGACCCTTC
AAAGACGACCATCAAGCGGCCCCCCTCCTCAAGGGAGACTATGTGGACAG
TGCCTAACATAATTACCTTGGCACGCATTATCTCGTCTCCTTTACTCGCG
GGCTTGATTCTTCAAGGTCGATACTCGTATGCAGTGATGGGTCTCGCGGT
GGCCGCCGGCTCTGATTGGCTGGATGGGCATATCGCCAAGAATTATAACC
AGTCCTCTGTCTTGGGCAGCTTCCTGGATCCCTTGGCGGATAAAGTCCTG
GTGGCCGCACTCGCCGTGCCCCTGGCTTTACAAGGCTTCATACCCACCCC
ATTGCTCGTGGTAGTCCTGGGACGAGACGCCTTATTGATTGGCGGCTCGT
TTATCAAGCGCCTTCAGAATCGACCCGTGGGGGCTCCCTTTTTCGACACC
GCCTCTTCGGCAACATTTCAAATTACGCCGAACCTGCTGAGTAAAATCAA
TACGACATTGCAGTTTATCGTCCTCACTTTTGCGCTCTGTCGCGCTTTGT
GGGGCGACGCGATCCCGGCCGCGGTGGACGAGGTGTTCGAGCCGCTCTGG
TAGGTCGGGGCGAGACTAGGGCGGCCCATCTGGCGGGAAATTGCGGTGCT
TTGGTCAAGCTCGAAGCAACAAAGTGTCTGACGCTGAGAGGCATCGATTT
GTTGTCTGCGTGTAGCGCACTCATGTTCATGGCATGTGGCGACGCCTGTT
GTACCCAGGGTGGCGGTCACTGATCGTGAATGTGCCCGAATGAGCTTTTT
GTCGCCCGAACTAAAGTCTTTGTTACACACGCTTCCCTTCACAGCTGGCT
CACCGGTGGCACGACCGTCGGTTCGGGCTTGACGTATCTCGCGGGGGACG
GGACGGGCTCCTTGCTGCGGAAAAGGGGAAAGAAGGAGGGGGATGCTCGG
ATGAAGGCGACGGCCGCCGGGAGAAAGATTGATGAGCAGCGAAGATGA
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Coding sequence (CDS) from alignment at CM002456.1:906569..907866-

>rna987 ID=rna987|Name=rna987|organism=Nannochloropsis gaditana|type=CDS|length=2106bp|location=Sequence derived from alignment at CM002456.1:906569..907866- (Nannochloropsis gaditana)
CTGGCTCACCGGTGGCACGACCGTCGGTTCGGGCTTGACGTATCTCGCGG
GGGACGGGACGGGCTCCTTGCTGCGGAAAAGGGGAAAGAAGGAGGGGGAT
GCTCGGATGAAGGCGACGGCCGCCGGGAGAAAGATTGATGAGCAGCGAAG
ATGAATGTCCGTGCGGTCCCAAAAAGTAATTGGTTGGGAGGCTACCGTGG
AACCGCCGTGGAGACTTCATCTATTAGCTCCCACAAATATGTCCTCCAGG
GCTGCGTCGTCACTAGTACTATCCTTGCGGCTCCGTGGACCCTCTTCCCG
TCTAAGACTACTTCCAGTCCTCGGTCATGGTGTCCATTCCCTCGCGGGAA
AGCCGCAGCGGCTTCACCATTTTAAGGGGTTTCATCTGCAGACATCTTTT
TTGCCCAGTAACAGCCAGTACCTGCACGTGCCTCCACAAGCAGTCAAACC
GGAGGCGAGGTTGAAGGAAGATGGATCGTTCGCCAGCGAAGGATCAGACC
CTTCAAAGACGACCATCAAGCGGCCCCCCTCCTCAAGGGAGACTATGTGG
ACAGTGCCTAACATAATTACCTTGGCACGCATTATCTCGTCTCCTTTACT
CGCGGGCTTGATTCTTCAAGGTCGATACTCGTATGCAGTGATGGGTCTCG
CGGTGGCCGCCGGCTCTGATTGGCTGGATGGGCATATCGCCAAGAATTAT
AACCAGTCCTCTGTCTTGGGCAGCTTCCTGGATCCCTTGGCGGATAAAGT
CCTGGTGGCCGCACTCGCCGTGCCCCTGGCTTTACAAGGCTTCATACCCA
CCCCATTGCTCGTGGTAGTCCTGGGACGAGACGCCTTATTGATTGGCGGC
TCGTTTATCAAGCGCCTTCAGAATCGACCCGTGGGGGCTCCCTTTTTCGA
CACCGCCTCTTCGGCAACATTTCAAATTACGCCGAACCTGCTGAGTAAAA
TCAATACGACATTGCAGTTTATCGTCCTCACTTTTGCGCTCTGTCGCGCT
TTGTGGGGCGACGCGATCCCGGCCGCGGTGGACGAGGTGTTCGAGCCGCT
CTGCTGGCTCACCGGTGGCACGACCGTCGGTTCGGGCTTGACGTATCTCG
CGGGGGACGGGACGGGCTCCTTGCTGCGGAAAAGGGGAAAGAAGGAGGGG
GATGCTCGGATGAAGGCGACGGCCGCCGGGAGAAAGATTGATGAGCAGCG
AAGATGAATGTCCGTGCGGTCCCAAAAAGTAATTGGTTGGGAGGCTACCG
TGGAACCGCCGTGGAGACTTCATCTATTAGCTCCCACAAATATGTCCTCC
AGGGCTGCGTCGTCACTAGTACTATCCTTGCGGCTCCGTGGACCCTCTTC
CCGTCTAAGACTACTTCCAGTCCTCGGTCATGGTGTCCATTCCCTCGCGG
GAAAGCCGCAGCGGCTTCACCATTTTAAGGGGTTTCATCTGCAGACATCT
TTTTTGCCCAGTAACAGCCAGTACCTGCACGTGCCTCCACAAGCAGTCAA
ACCGGAGGCGAGGTTGAAGGAAGATGGATCGTTCGCCAGCGAAGGATCAG
ACCCTTCAAAGACGACCATCAAGCGGCCCCCCTCCTCAAGGGAGACTATG
TGGACAGTGCCTAACATAATTACCTTGGCACGCATTATCTCGTCTCCTTT
ACTCGCGGGCTTGATTCTTCAAGGTCGATACTCGTATGCAGTGATGGGTC
TCGCGGTGGCCGCCGGCTCTGATTGGCTGGATGGGCATATCGCCAAGAAT
TATAACCAGTCCTCTGTCTTGGGCAGCTTCCTGGATCCCTTGGCGGATAA
AGTCCTGGTGGCCGCACTCGCCGTGCCCCTGGCTTTACAAGGCTTCATAC
CCACCCCATTGCTCGTGGTAGTCCTGGGACGAGACGCCTTATTGATTGGC
GGCTCGTTTATCAAGCGCCTTCAGAATCGACCCGTGGGGGCTCCCTTTTT
CGACACCGCCTCTTCGGCAACATTTCAAATTACGCCGAACCTGCTGAGTA
AAATCAATACGACATTGCAGTTTATCGTCCTCACTTTTGCGCTCTGTCGC
GCTTTGTGGGGCGACGCGATCCCGGCCGCGGTGGACGAGGTGTTCGAGCC
GCTCTG
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Synonyms
Publications