EWM29685.1, cds986 (CDS) Nannochloropsis gaditana

Overview
NameEWM29685.1
Unique Namecds986
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:906968..907866 -
Alignment locationCM002456.1:906569..906722 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29685.1
Productcdp-diacylglycerol--glycerol-3-phosphate 3
Orig transcript idgnl|cribi|Naga_100114g5.2470.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:906968..907866 -
CM002456.1supercontigCM002456.1:906569..906722 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0008654phospholipid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0016780phosphotransferase activity, for other substituted phosphate groups
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000462CDP-OH_P_trans
Homology
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|585112261|gb|EWM29685.1| (cdp-diacylglycerol--glycerol-3-phosphate 3 [Nannochloropsis gaditana])

HSP 1 Score: 705.671 bits (1820), Expect = 0.000e+0
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:    1 MSVRSQKVIGWEATVEPPWRLHLLAPTNMSSRAASSLVLSLRLRGPSSRLRLLPVLGHGVHSLAGKPQRLHHFKGFHLQTSFLPSNSQYLHVPPQAVKPEARLKEDGSFASEGSDPSKTTIKRPPSSRETMWTVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLAGDGTGSLLRKRGKKEGDARMKATAAGRKIDEQRR 350
            MSVRSQKVIGWEATVEPPWRLHLLAPTNMSSRAASSLVLSLRLRGPSSRLRLLPVLGHGVHSLAGKPQRLHHFKGFHLQTSFLPSNSQYLHVPPQAVKPEARLKEDGSFASEGSDPSKTTIKRPPSSRETMWTVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLAGDGTGSLLRKRGKKEGDARMKATAAGRKIDEQRR
Sbjct:    1 MSVRSQKVIGWEATVEPPWRLHLLAPTNMSSRAASSLVLSLRLRGPSSRLRLLPVLGHGVHSLAGKPQRLHHFKGFHLQTSFLPSNSQYLHVPPQAVKPEARLKEDGSFASEGSDPSKTTIKRPPSSRETMWTVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLAGDGTGSLLRKRGKKEGDARMKATAAGRKIDEQRR 350          
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|325187601|emb|CCA22137.1| (cardiolipin synthetase putative [Albugo laibachii Nc14])

HSP 1 Score: 173.326 bits (438), Expect = 2.108e-48
Identity = 93/230 (40.43%), Postives = 141/230 (61.30%), Query Frame = 0
Query:   94 PQAVKPEARLKEDGSFASEGSDPSKTTIKR-------PPSSRETMWTVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLA 316
            P+ ++P   ++      SE +   + +IK+          +R ++W VPN IT  RI+++P LA +I Q  Y+ A+  LA A  SDWLDG+IA+  N  S+LGSFLDPLADK+++A+L+  +     IP PL V++ GRD LL+GG+F  R + +   + FFDT  S++F I P+ LSK+NT LQF +    L  ++WG  IP ++  + +PL  L G TT+ SG+ YL+
Sbjct:   24 PRYIQPILHIR----MCSEKTQRCEKSIKKFSGVAQIETLARLSIWNVPNAITFTRILATPYLAFVITQANYTTAIGVLAFAGVSDWLDGYIARTCNTQSILGSFLDPLADKMIIASLSGSMVWAQLIPLPLAVLIFGRDVLLVGGTFYHRYRTKRKQSAFFDTTDSSSFGIKPSRLSKLNTALQFTMFGCTLSHSIWG--IPQSI--ILDPLFGLVGVTTLVSGMEYLS 245          
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|953491741|emb|CEG45750.1| (probable cardiolipin synthase-like [Plasmopara halstedii])

HSP 1 Score: 168.703 bits (426), Expect = 4.641e-46
Identity = 86/187 (45.99%), Postives = 123/187 (65.78%), Query Frame = 0
Query:  131 MWTVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLAG 317
            M  VPN+IT+ARI+++P LA  I++G Y  A+  LAVA  SDWLDG IA+ ++Q S++GSFLDP ADK+L+ +L++ +   G +PTPL  ++LGRD +L+ G+F  RL+ +   + FFDT+ S TFQ+ P++LSKINT LQ  V   AL +  W   +P   + +   L  + G TT  SG  YL G
Sbjct:   91 MINVPNVITVARILATPYLAFTIIEGEYGLALGLLAVAGVSDWLDGFIARAFHQESIVGSFLDPFADKLLIGSLSLSMMWTGLLPTPLATLILGRDFMLMSGTFYFRLKTKNQSSAFFDTSDSVTFQVKPSMLSKINTALQLSVCGLALTKEAW--QLPP--EPILNLLFGVVGTTTFLSGFEYLYG 273          
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|298709395|emb|CBJ31328.1| (CDP-alcohol phosphatidyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 160.614 bits (405), Expect = 8.492e-44
Identity = 88/187 (47.06%), Postives = 123/187 (65.78%), Query Frame = 0
Query:  129 ETMWTVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYL 315
            + +WTVPN+IT+ RI   P+LA LI+  ++  A+ GL  A+ +DWLDG+IA+ + Q+SVLG FLDPLADKV+V  +A+ L  QG +PT L+ +++GRDALLI GS   R + R  G  FFD   S  +++TP+ LSK+NT LQF  L   L  +++   +P   D VF  LC  TG  T+ SG+ YL
Sbjct:    7 DRVWTVPNMITMGRIAFCPVLASLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPTALVALMVGRDALLIAGSIAYRFKTRREGDAFFDL-DSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVY--LVPG--DAVFSALCVGTGVATLASGVNYL 188          
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|673018042|ref|XP_008862982.1| (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Aphanomyces invadans] >gi|574482185|gb|ETW09177.1| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Aphanomyces invadans])

HSP 1 Score: 159.458 bits (402), Expect = 3.026e-43
Identity = 91/209 (43.54%), Postives = 128/209 (61.24%), Query Frame = 0
Query:  114 SDPSKTTIKRPPSSRETMW---TVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGT--TVGSGLTYLAG 317
             +P+ T+IK    S + M    T+PN+IT+ RI+++P L  LI+QG Y YAV  LAVA+ SDWLDG++A+  +Q +V+G+FLDPLADK++V  L + L     +P PL+VV+ GRD LLIGG+ + R + R   + FF T ++  F++ P L SKINT LQF  L  AL  A     +P + D   +  C   G T  T  SG  YL+ 
Sbjct:   41 DEPAATSIKNDRPSNDKMLQILTLPNVITMTRIVATPYLGHLIMQGEYKYAVGVLAVASISDWLDGYLARKLDQKTVVGTFLDPLADKLMVGTLCLSLGYVQLLPLPLVVVIFGRDLLLIGGTLLYRHRTRNASSDFFQTNNA--FEVQPTLTSKINTALQFTTLGGALLHA--ASPVPGS-DVALQ--CLFAGVTVSTFASGFGYLSA 242          
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|673018044|ref|XP_008862983.1| (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, variant [Aphanomyces invadans] >gi|574482186|gb|ETW09178.1| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, variant [Aphanomyces invadans])

HSP 1 Score: 157.532 bits (397), Expect = 1.263e-42
Identity = 81/174 (46.55%), Postives = 115/174 (66.09%), Query Frame = 0
Query:  112 EGSDPSKTTIKRPPSSRETMW---TVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRA 282
            +  +P+ T+IK    S + M    T+PN+IT+ RI+++P L  LI+QG Y YAV  LAVA+ SDWLDG++A+  +Q +V+G+FLDPLADK++V  L + L     +P PL+VV+ GRD LLIGG+ + R + R   + FF T ++  F++ P L SKINT LQF  L  AL  A
Sbjct:   39 QVDEPAATSIKNDRPSNDKMLQILTLPNVITMTRIVATPYLGHLIMQGEYKYAVGVLAVASISDWLDGYLARKLDQKTVVGTFLDPLADKLMVGTLCLSLGYVQLLPLPLVVVIFGRDLLLIGGTLLYRHRTRNASSDFFQTNNA--FEVQPTLTSKINTALQFTTLGGALLHA 210          
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|1173937664|gb|OQR88380.1| (cardiolipin synthetase [Thraustotheca clavata])

HSP 1 Score: 153.295 bits (386), Expect = 4.535e-41
Identity = 84/197 (42.64%), Postives = 118/197 (59.90%), Query Frame = 0
Query:  134 VPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLAGDGTGSLLRKRGKK 330
            +PN IT  RI+S+P L  LI  G Y  A+  L VA  SDWLDG++A+  NQ +++G+FLDPLADK++V  L V +A  G +P P++V++ GRD LL+GG+F  R   +  G+ FF T    +F++TP+LLSK+NT LQF  L  AL  A +      A++ +F  +      +T  SG  YL    T S    R KK
Sbjct:   54 LPNAITFTRIVSTPYLGYLIATGNYPTALGVLGVAGFSDWLDGYLARKLNQKTIVGTFLDPLADKLMVGTLCVSMAYTGLLPLPVMVIIFGRDLLLVGGTFYHRYHTKTSGSGFFQTDDLTSFEVTPSLLSKVNTALQFGTLGSALLNATFQFPGELAMNVLFGSVAI----STFASGSMYLRDYLTNSGTFHRVKK 246          
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|698775912|ref|XP_009821000.1| (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Aphanomyces astaci] >gi|574123125|gb|ETV88600.1| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Aphanomyces astaci])

HSP 1 Score: 152.91 bits (385), Expect = 5.007e-41
Identity = 91/208 (43.75%), Postives = 123/208 (59.13%), Query Frame = 0
Query:  114 SDPSKTTIKRPPSSRETM--WTVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGT--TVGSGLTYLAG 317
             DP  TT K   S+ + +   T+PN IT+ RI  +P L  LI+QG Y +AV  LAVA+ SDWLDG++A+  +Q +V+G+FLDPLADK +V  L V L     +P PL+VV+ GRD LLIGG+ + R + R   + FF T ++  F++ P L SK+NT LQF  L  AL +A    A P    +V    C   G T  T  SG  YL+ 
Sbjct:   16 DDPEATTKKDRASNDKMLQVLTLPNAITMTRIACTPYLGHLIMQGEYKFAVGVLAVASVSDWLDGYLARKLDQRTVVGTFLDPLADKFMVGTLCVSLGYVQLLPLPLVVVIFGRDLLLIGGTLLYRHRTRKSSSDFFQTNNA--FEVEPTLTSKVNTALQFTTLGGALLQA----ACPIPGSDV-ALHCLFAGVTMSTFASGFGYLSA 216          
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|566010478|gb|ETI33389.1| (hypothetical protein F443_19934 [Phytophthora parasitica P1569])

HSP 1 Score: 153.68 bits (387), Expect = 7.241e-40
Identity = 87/185 (47.03%), Postives = 117/185 (63.24%), Query Frame = 0
Query:  133 TVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLAG 317
             +PN+IT ARI+++P LA LI+QG +  A+  LAVA  SDWLDG IA+ ++Q S++GSFLDP ADK+L+  L++ +   G +P PL  ++LGRD LLIGG+F  RL+ +   + FFDT+ S  FQ+ P++LSK+NT LQ  V    L  A W   IP   D     L    G TT  SG  YL G
Sbjct:  119 NIPNVITAARILTTPYLAHLIIQGDHVSAIGLLAVAGVSDWLDGFIARTFHQESIVGSFLDPFADKLLIGTLSLSMMWTGLLPLPLAALILGRDGLLIGGTFYHRLKTKDESSGFFDTSDSGAFQVKPSMLSKVNTALQLSVFGLTLTNAAW--QIPP--DPALHLLFGAVGTTTFLSGSEYLYG 299          
BLAST of EWM29685.1 vs. NCBI_GenBank
Match: gi|301096295|ref|XP_002897245.1| (cardiolipin synthetase, putative [Phytophthora infestans T30-4] >gi|262107330|gb|EEY65382.1| cardiolipin synthetase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 152.14 bits (383), Expect = 8.434e-40
Identity = 86/183 (46.99%), Postives = 116/183 (63.39%), Query Frame = 0
Query:  133 TVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYL 315
             VPN+IT ARI+++P LA LI+QG Y  A+  LAVA  SDWLDG IA+ ++Q S++GSFLDP ADK+L+  L++ +   G +P PL  ++LGRD +LIGG+F  RL+ +   + FFDT+ S  FQ+ P++LSK+NT LQ       L  A W   IP   D     L  + G TT  SG  YL
Sbjct:  116 NVPNVITAARILATPYLAHLIIQGDYVSAIGLLAVAGVSDWLDGFIARTFHQESIVGSFLDPFADKLLIGTLSLSMMWTGLLPLPLAALILGRDGMLIGGTFYHRLKTKDESSGFFDTSDSGAFQVKPSMLSKVNTALQLSAFGLTLTNAAW--QIPP--DPALSLLFGVVGTTTFLSGSEYL 294          
The following BLAST results are available for this feature:
BLAST of EWM29685.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112261|gb|EWM29685.1|0.000e+0100.00cdp-diacylglycerol--glycerol-3-phosphate 3 [Nannoc... [more]
gi|325187601|emb|CCA22137.1|2.108e-4840.43cardiolipin synthetase putative [Albugo laibachii ... [more]
gi|953491741|emb|CEG45750.1|4.641e-4645.99probable cardiolipin synthase-like [Plasmopara hal... [more]
gi|298709395|emb|CBJ31328.1|8.492e-4447.06CDP-alcohol phosphatidyltransferase [Ectocarpus si... [more]
gi|673018042|ref|XP_008862982.1|3.026e-4343.54CDP-diacylglycerol-glycerol-3-phosphate 3-phosphat... [more]
gi|673018044|ref|XP_008862983.1|1.263e-4246.55CDP-diacylglycerol-glycerol-3-phosphate 3-phosphat... [more]
gi|1173937664|gb|OQR88380.1|4.535e-4142.64cardiolipin synthetase [Thraustotheca clavata][more]
gi|698775912|ref|XP_009821000.1|5.007e-4143.75CDP-diacylglycerol-glycerol-3-phosphate 3-phosphat... [more]
gi|566010478|gb|ETI33389.1|7.241e-4047.03hypothetical protein F443_19934 [Phytophthora para... [more]
gi|301096295|ref|XP_002897245.1|8.434e-4046.99cardiolipin synthetase, putative [Phytophthora inf... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna987rna987Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications