rna9860, rna9860 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9860
Unique Name	rna9860
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1465
Alignment location	KK037256.1:285771..287761 -

Link to JBrowse

Properties


Property Name	Value
Product	prolyl 4-hydroxylase alpha-1 subunit precursor
Orig transcript id	gnl\|cribi\|Naga_101456g1.2864.mrna
Orig protein id	gnl\|cribi\|Naga_101456g1.2864
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:285771..287761 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101456g1	gene9572	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9860	rna9860-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20844.1	cds9829	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:285771..287761-
coding sequence from alignment at KK037256.1:285771..287761-

mRNA sequence

>rna9860 ID=rna9860|Name=rna9860|organism=Nannochloropsis gaditana|type=mRNA|length=1465bp
CTGCCTCATATTCTTCGCTTCATGAGCTTTTTAGACAATATGACGCACAA
TTCAGTCTTTTCAATTACCCTCAAATCATTTTTAGTTACAGGAAAACTGA
GTGGAACACATCATGCCTGGGGAATCGCCGCCAGCAAAAGCGCCGCGACC
ACTCCCACAACCACGCTCAAACGACACATCCATCCCTTCTCCGCCTCCCA
CTTCGCCAACTCCTTCTCCTCTAATAGCGGCTTCACTCTCTACAGAAGTA
GAACTTTCTCAACCTGACAAACATGCTACCTACCGCCCACAGTCACCGCC
ATCTCCACCAGTCTCACCCATGCCAGGTCTTCCACGACTTTTCGCAAGCA
GAAAAAGGACGAGCCGCCCGAGAATAAAGCGCAATAGCTTGAACCCTTTC
GATGACGAGCGAAATGAGATACAAGCAATGCCTCATTACAGAATAGACCC
TGACCTGCTGCGCAAGCAAACGTCGTGTGCGCCGGTGCGACTACTCGAGG
TCCACAGTGGAGATGCCCATGGAAGTGAAGATCTTCCTCGCCTCTCTTCG
GGCGTCCCGAACCCTTATGTCCGATATCCACGCCAAAATACGGCTCGCGG
TATTATGGCCCCATCTGCCCTCCCTTCCTCCCGTACATACCCGACTACAC
CCCTGGCTTCCCTCGGACGAAGCCAGGCGGGAGAGGGCTACACGGGACCA
ACCCCGCGGCCGTGCCATGAGGAGGCGCACCCCTCCCATCAAGACAACAG
ATCACCGCTAGGATTACCATTAGAAGGCAACGAACGCATGTGTAGCGGCG
ACGACGCAGCCAGCCGGCACCTTTCCCGTGCCCAAGGCGCCGTACCGACC
GGAAGCGGGCAGGGTCTTGCTCCCCTCCCCTCAACTCGTCCTCCTTCAAC
CGCCATCGCATCATCCCCGTCATCCCCTTCCCTATCCTACCCAACGATTT
TGACCGGCCGCCGCATCTCGTTCCGCTTCCAACCCGCTTCCCCTTCCCCC
ACCTCCTCCTCTCCCTCCTCCTCCTCCTCCTCCCTTGCTTCCGGCATTCC
GCCGTCCCCGACGCCAGACCTCACCCAGCAGCCCGCCTCCATTCCCGCCA
TGAAGTGCTCTGCGTCTTCGGCTCTCAATCCCGCCTTGTTGAAATCCTAC
GACGCCCGCCAAATCGGATTCGAAATTGCGCGAAATTACGTCCGCCTGTA
CACGCAGGCGGAACGCGACGTCTTGAACGAGCAGTACGAAGGACTCTTGA
AATGCCACGGGCGGGACCCAGTCGTGGCTTGGCTGCACAAGGAGGTAATG
TGGCCGATGCGTCCTCCCTCGTCTTTCCCTGCTGAGTCCTCCCTATTGCT
TGCCAGCCCCCCCTCTCCCCCCTTCCCGGCCCTCACCCTGCTTTCTTCAC
GTTTCCCTTCCTCCTTTCTCAGGTCGTCCTCGACGTGCTTGAGTCCTCCA
ACACACCCTACCTGA

protein sequence of rna9860

>rna9860-protein ID=rna9860-protein|Name=rna9860|organism=Nannochloropsis gaditana|type=polypeptide|length=281bp
MPATGHEQQHLHDAEPHGDVQPPPMDSGGHKQHDGPGDRSQPPPFSRLAS
PLLPGHAAFAPVLLPPVTPLPLSSSCAPATQPLSTFPPPAVPARPALPPS
FPPSAASSLLPSAGTSSSFPSPDPSCFLPTLSMAAALASSPATSSGVSLP
PLPSAPPSLPPSLPPSLPPPPLPFPPPRTTLAGQYLPLNPLFPGLKLIYA
QPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCY
LAREDVPSLLSKVCLLTGKPPHDIELPQVGR

mRNA from alignment at KK037256.1:285771..287761-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9860 ID=rna9860|Name=rna9860|organism=Nannochloropsis gaditana|type=mRNA|length=1991bp|location=Sequence derived from alignment at KK037256.1:285771..287761- (Nannochloropsis gaditana)
CACCGTCCTTTTCTTTTGGGGGGGTGGCACTGCCTCGAGCTCGACGCACG
TTTCCAATGCAAGGAGCTTGAGGGAGGATTTCGATGCACTGCATTTTCAA
ACGCTGTGTTTGTACACGGTTTTCCTTTGAAGTGGGTGTGAATGCCCAGT
GTAATTTATGCCCGTGTACGGCGGTTTTTGGTTTTTTCCCCCTCAACCCT
TCCTATTCCCCCCCTTTTGCCACCCTATAATAATCGCCTTCGTATAAAGC
GAGGGGAGACTTCAACAAAAGGATGAGACAGACACACAGCCATATACCAC
GCGACAGCCGCAGGGGTGTGGTGTGGCAAGGTAATCGAGCCTCATCGCAA
CGTCGTGCAACCTGTCCACGCTTTTTTTTGGTTCTCTCGTCTTGACCAGG
GAGGGGGGGAACGTCCAAGAGCAGTAGAAACGTGGTGCTAGTAAAAAGAG
ACTTGCGGGGGGGTGGACTGGGATGCCCTGGGGGGGCGAAATCTCACAGC
AAGACATGAAAGATGCTACACACACTTGCATACAGGTCACAAATTTGCAA
TATCGGCGCTCAGTAAGGCGGGCCTGCTGTTTGTGGCATCAAGCTGAAGA
CAATTCACGGGAAGTTTGGGACGCGGGCTGGCAGCTGGGAGAGGGGGAGG
AAGAGGTAGACCCATTCAGGATAAGTAACCTCGGACACAATGCCCGCCAC
CGGCCACGAACAGCAGCATCTACACGATGCAGAGCCTCACGGGGACGTGC
AGCCCCCGCCCATGGACAGCGGGGGGCACAAACAACACGACGGCCCGGGA
GATAGGAGTCAACCTCCCCCCTTTTCTCGACTTGCATCTCCCCTCCTTCC
AGGGCATGCGGCCTTTGCGCCTGTCCTCCTTCCTCCCGTGACTCCCCTTC
CCTTGTCCTCCTCGTGCGCCCCTGCAACCCAACCTTTGTCGACGTTTCCT
CCCCCGGCGGTGCCAGCACGGCCTGCCCTCCCTCCCTCCTTCCCTCCCTC
CGCCGCTTCCTCCCTCCTTCCCTCCGCCGGCACCTCCTCCTCGTTCCCTT
CCCCAGACCCGAGCTGCTTCCTCCCCACCCTTTCCATGGCTGCCGCACTC
GCCTCTTCCCCTGCCACGTCCTCCGGCGTCAGCCTCCCTCCTCTCCCCTC
CGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTC
CCCTTCCTTTTCCTCCCCCTCGTACCACCCTGGCCGGCCAATACCTTCCT
CTAAACCCCCTCTTTCCGGGCCTCAAGCTCATTTATGCCCAGCCGCCTGT
GTAAGGGAGGAAAGGAGGGAGGGAGAGAGGGAGGGAGGGAAGAGGGGTCA
AGGGGGGGCAATGGAAAAAAGAGAAAGGAGATATGAAGCTTCAGTGTGCC
TCCAAGCAGTTTTTTTAGGTCGAGGCTCTCCCCATTTTCTCTCCCTCTCC
CCTTCCCTCCTCTGTGTCACCCCTTTCTTCCTTCCTTCCTCCCTCCCTCC
CTCCCTCCTTCCCTCCCTCCCTCCCTCGCCCCCCCCCCCCCCAGCTACCT
GATTGAAAACTTCCTGCCCCCAGACGAGTGTCAAGCGCTGATAATGGCGG
CGTCCGGCTTTCTCATTCCAGCCCCGGTTGTGGGGGCGGGCAACGGGGAG
CTGAGTGGGAGGTAGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGC
AGGAGGGAGGGAGGGAGGAACGAGTGATCGTTGAGGATGTTCAGCGAAAG
TTATCATGCGACAGAAGGAGGAAAGGAGGAAGCTCCAAAGACAAGCACGT
ACCGACCCTCCTTTCTCCCTTCCTCCCTCCCTTCCTCCCTCCATTTCTCC
CTCCCTCCCTTCTTCCTTCCAGCCGCACCTCCTCCACCTGCTACTTGGCG
CGCGAGGACGTTCCCTCCCTTCTCAGCAAGGTCTGTCTTCTCACTGGGAA
GCCTCCTCATGACATCGAACTCCCTCAAGTTGGACGGTAGG

Coding sequence (CDS) from alignment at KK037256.1:285771..287761-

>rna9860 ID=rna9860|Name=rna9860|organism=Nannochloropsis gaditana|type=CDS|length=2538bp|location=Sequence derived from alignment at KK037256.1:285771..287761- (Nannochloropsis gaditana)
CCGCACCTCCTCCACCTGCTACTTGGCGCGCGAGGACGTTCCCTCCCTTC
TCAGCAAGGTCTGTCTTCTCACTGGGAAGCCTCCTCATGACATCGAACTC
CCTCAAGTTGGACGGTAGCTACCTGATTGAAAACTTCCTGCCCCCAGACG
AGTGTCAAGCGCTGATAATGGCGGCGTCCGGCTTTCTCATTCCAGCCCCG
GTTGTGGGGGCGGGCAACGGGGAGCTGAGTGGGAGATGCCCGCCACCGGC
CACGAACAGCAGCATCTACACGATGCAGAGCCTCACGGGGACGTGCAGCC
CCCGCCCATGGACAGCGGGGGGCACAAACAACACGACGGCCCGGGAGATA
GGAGTCAACCTCCCCCCTTTTCTCGACTTGCATCTCCCCTCCTTCCAGGG
CATGCGGCCTTTGCGCCTGTCCTCCTTCCTCCCGTGACTCCCCTTCCCTT
GTCCTCCTCGTGCGCCCCTGCAACCCAACCTTTGTCGACGTTTCCTCCCC
CGGCGGTGCCAGCACGGCCTGCCCTCCCTCCCTCCTTCCCTCCCTCCGCC
GCTTCCTCCCTCCTTCCCTCCGCCGGCACCTCCTCCTCGTTCCCTTCCCC
AGACCCGAGCTGCTTCCTCCCCACCCTTTCCATGGCTGCCGCACTCGCCT
CTTCCCCTGCCACGTCCTCCGGCGTCAGCCTCCCTCCTCTCCCCTCCGCC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTCCCCT
TCCTTTTCCTCCCCCTCGTACCACCCTGGCCGGCCAATACCTTCCTCTAA
ACCCCCTCTTTCCGGGCCTCAAGCTCATTTATGCCCAGCCGCCTGTCCGC
ACCTCCTCCACCTGCTACTTGGCGCGCGAGGACGTTCCCTCCCTTCTCAG
CAAGGTCTGTCTTCTCACTGGGAAGCCTCCTCATGACATCGAACTCCCTC
AAGTTGGACGGTAGCTACCTGATTGAAAACTTCCTGCCCCCAGACGAGTG
TCAAGCGCTGATAATGGCGGCGTCCGGCTTTCTCATTCCAGCCCCGGTTG
TGGGGGCGGGCAACGGGGAGCTGAGTGGGAGATGCCCGCCACCGGCCACG
AACAGCAGCATCTACACGATGCAGAGCCTCACGGGGACGTGCAGCCCCCG
CCCATGGACAGCGGGGGGCACAAACAACACGACGGCCCGGGAGATAGGAG
TCAACCTCCCCCCTTTTCTCGACTTGCATCTCCCCTCCTTCCAGGGCATG
CGGCCTTTGCGCCTGTCCTCCTTCCTCCCGTGACTCCCCTTCCCTTGTCC
TCCTCGTGCGCCCCTGCAACCCAACCTTTGTCGACGTTTCCTCCCCCGGC
GGTGCCAGCACGGCCTGCCCTCCCTCCCTCCTTCCCTCCCTCCGCCGCTT
CCTCCCTCCTTCCCTCCGCCGGCACCTCCTCCTCGTTCCCTTCCCCAGAC
CCGAGCTGCTTCCTCCCCACCCTTTCCATGGCTGCCGCACTCGCCTCTTC
CCCTGCCACGTCCTCCGGCGTCAGCCTCCCTCCTCTCCCCTCCGCCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTCCCCTTCCT
TTTCCTCCCCCTCGTACCACCCTGGCCGGCCAATACCTTCCTCTAAACCC
CCTCTTTCCGGGCCTCAAGCTCATTTATGCCCAGCCGCCTGTCCGCACCT
CCTCCACCTGCTACTTGGCGCGCGAGGACGTTCCCTCCCTTCTCAGCAAG
GTCTGTCTTCTCACTGGGAAGCCTCCTCATGACATCGAACTCCCTCAAGT
TGGACGGTAGCTACCTGATTGAAAACTTCCTGCCCCCAGACGAGTGTCAA
GCGCTGATAATGGCGGCGTCCGGCTTTCTCATTCCAGCCCCGGTTGTGGG
GGCGGGCAACGGGGAGCTGAGTGGGAGATGCCCGCCACCGGCCACGAACA
GCAGCATCTACACGATGCAGAGCCTCACGGGGACGTGCAGCCCCCGCCCA
TGGACAGCGGGGGGCACAAACAACACGACGGCCCGGGAGATAGGAGTCAA
CCTCCCCCCTTTTCTCGACTTGCATCTCCCCTCCTTCCAGGGCATGCGGC
CTTTGCGCCTGTCCTCCTTCCTCCCGTGACTCCCCTTCCCTTGTCCTCCT
CGTGCGCCCCTGCAACCCAACCTTTGTCGACGTTTCCTCCCCCGGCGGTG
CCAGCACGGCCTGCCCTCCCTCCCTCCTTCCCTCCCTCCGCCGCTTCCTC
CCTCCTTCCCTCCGCCGGCACCTCCTCCTCGTTCCCTTCCCCAGACCCGA
GCTGCTTCCTCCCCACCCTTTCCATGGCTGCCGCACTCGCCTCTTCCCCT
GCCACGTCCTCCGGCGTCAGCCTCCCTCCTCTCCCCTCCGCCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTCCCCTTCCTTTTC
CTCCCCCTCGTACCACCCTGGCCGGCCAATACCTTCCTCTAAACCCCCTC
TTTCCGGGCCTCAAGCTCATTTATGCCCAGCCGCCTGT

Synonyms

Publications