EWM20844.1, cds9829 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|585100777|gb|EWM20844.1| (prolyl 4-hydroxylase alpha-1 subunit precursor [Nannochloropsis gaditana]) HSP 1 Score: 525.013 bits (1351), Expect = 0.000e+0 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0 Query: 1 MPATGHEQQHLHDAEPHGDVQPPPMDSGGHKQHDGPGDRSQPPPFSRLASPLLPGHAAFAPVLLPPVTPLPLSSSCAPATQPLSTFPPPAVPARPALPPSFPPSAASSLLPSAGTSSSFPSPDPSCFLPTLSMAAALASSPATSSGVSLPPLPSAPPSLPPSLPPSLPPPPLPFPPPRTTLAGQYLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281 MPATGHEQQHLHDAEPHGDVQPPPMDSGGHKQHDGPGDRSQPPPFSRLASPLLPGHAAFAPVLLPPVTPLPLSSSCAPATQPLSTFPPPAVPARPALPPSFPPSAASSLLPSAGTSSSFPSPDPSCFLPTLSMAAALASSPATSSGVSLPPLPSAPPSLPPSLPPSLPPPPLPFPPPRTTLAGQYLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR Sbjct: 1 MPATGHEQQHLHDAEPHGDVQPPPMDSGGHKQHDGPGDRSQPPPFSRLASPLLPGHAAFAPVLLPPVTPLPLSSSCAPATQPLSTFPPPAVPARPALPPSFPPSAASSLLPSAGTSSSFPSPDPSCFLPTLSMAAALASSPATSSGVSLPPLPSAPPSLPPSLPPSLPPPPLPFPPPRTTLAGQYLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|1210528197|dbj|GAX13312.1| (hypothetical protein FisN_17Hh253 [Fistulifera solaris]) HSP 1 Score: 119.783 bits (299), Expect = 9.049e-29 Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 0 Query: 185 YLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281 Y +NP +PGL+++ PP++ +ENFL P EC LI AA L PAPVVG G GE+S SRTSSTCYLARED+ L+ KV LLTGKPP ELPQVGR Sbjct: 6 YNGVNPSYPGLRVLNNSPPIFAVENFLTPYECDFLIHAAVDALGPAPVVGKGAGEISPSRTSSTCYLAREDLGDLMRKVSLLTGKPPEHCELPQVGR 102
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|1210513681|dbj|GAX27364.1| (hypothetical protein FisN_17Lh253 [Fistulifera solaris]) HSP 1 Score: 119.398 bits (298), Expect = 9.949e-29 Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 0 Query: 185 YLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281 Y +NP +PGL+++ PP++ +ENFL P EC LI AA L PAPVVG G GE+S SRTSSTCYLARED+ L+ KV LLTGKPP ELPQVGR Sbjct: 6 YNGVNPSYPGLRVLNNSPPIFAVENFLTPYECDFLIHAAVDGLGPAPVVGKGAGEISPSRTSSTCYLAREDLGDLMRKVTLLTGKPPEHCELPQVGR 102
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|676385359|ref|XP_009035958.1| (hypothetical protein AURANDRAFT_14928, partial [Aureococcus anophagefferens] >gi|323454062|gb|EGB09933.1| hypothetical protein AURANDRAFT_14928, partial [Aureococcus anophagefferens]) HSP 1 Score: 114.39 bits (285), Expect = 1.433e-27 Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 0 Query: 202 PPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281 PP+Y ++NFL +EC ALI +A + PAPVVG GNGE+S SRTSSTCYLARED+PS+ +KVC LTGKP +ELPQVGR Sbjct: 1 PPIYTVQNFLTEEECDALIDSAKDHMTPAPVVGPGNGEVSVSRTSSTCYLAREDLPSVCTKVCALTGKPLEHLELPQVGR 80
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|298712929|emb|CBJ26831.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 108.227 bits (269), Expect = 3.772e-24 Identity = 50/91 (54.95%), Postives = 68/91 (74.73%), Query Frame = 0 Query: 191 LFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281 L+PGL+ + PP+Y++++F EC ALI A ++I +PVVGAG GE+S SRTSS+C+LARED+P++ KV LTGKP +ELPQVGR Sbjct: 90 LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVGR 180
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|224006045|ref|XP_002291983.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220972502|gb|EED90834.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 103.605 bits (257), Expect = 1.124e-23 Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 0 Query: 202 PPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281 PPV+ +ENFL P EC LI A++ L PAPVVG G GE+S SRTSSTCYLARED+P L KV +LTGKP ELPQVGR Sbjct: 1 PPVFSVENFLTPAECDFLIHASNDALGPAPVVGKGAGEVSPSRTSSTCYLAREDLPEYLRKVGVLTGKPAEHCELPQVGR 80
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|1072223559|gb|OEU08314.1| (hypothetical protein FRACYDRAFT_153725, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 98.2117 bits (243), Expect = 1.368e-21 Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 0 Query: 202 PPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281 PP+Y+++ FL DE Q LI AAS PAPVVG G+G +S +RTSSTCYLARED+P L KV LT P +ELPQVGR Sbjct: 1 PPIYIVDQFLNDDETQFLIDAASDSFTPAPVVGVGSGVISDTRTSSTCYLAREDLPDLARKVSALTQTPITHLELPQVGR 80
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|219123691|ref|XP_002182153.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406114|gb|EEC46054.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 97.0561 bits (240), Expect = 5.936e-21 Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0 Query: 202 PPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281 PP++ ++NFL P EC+ LI A PAPVVG G GE+S SRTSSTCYL+RED+P L+ KV LTGKP ELPQVGR Sbjct: 6 PPMFAVDNFLTPLECEFLIHMAQDSFGPAPVVGKGAGEVSPSRTSSTCYLSREDLPDLMRKVSSLTGKPIEHCELPQVGR 85
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|922853399|gb|KOO22018.1| (prolyl 4-hydroxylase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 91.2781 bits (225), Expect = 1.739e-17 Identity = 56/133 (42.11%), Postives = 71/133 (53.38%), Query Frame = 0 Query: 151 PLPSAPPSLPPSLPPSLPPPPLPFPPPRTTLAGQYLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPS--LLSKVCLLTGKPPHDIELPQVGR 281 P SA P PS P P + +PP +L LN +PGLK ++ PPVYL+E+FL +ECQALI A L + A E + RTS TC+LA+ P LL K+ LT KP +ELPQV R Sbjct: 51 PTKSAHPRDRPSQPHCDLPLVVEYPPEAVRDGFTFLQLNADYPGLKRVHDSPPVYLVEDFLTDEECQALIETAGPLLQRSKTHAAAGSEATKGRTSLTCHLAKHVYPCPILLKKIHNLTNKPYGHMELPQVAR 183
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|551622537|ref|XP_005791597.1| (hypothetical protein EMIHUDRAFT_439880 [Emiliania huxleyi CCMP1516] >gi|485645555|gb|EOD39168.1| hypothetical protein EMIHUDRAFT_439880 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 85.5001 bits (210), Expect = 1.436e-15 Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 0 Query: 185 YLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLARED--VPSLLSKVCLLTGKPPHDIELPQVGR 281 Y+PLN +PGLK I+ QPP+Y+ +FL DEC AL+ A+ L + E + RTS TC+L+++ P+LLSK+ LTGKP +ELPQV R Sbjct: 27 YMPLNMGYPGLKRIHEQPPIYVCHDFLSDDECAALMQVATPLLQRSKTHAVAGSEATRGRTSLTCHLSKKADPCPALLSKIQALTGKPFDHMELPQVAR 125 The following BLAST results are available for this feature:
BLAST of EWM20844.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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