EWM20844.1, cds9829 (CDS) Nannochloropsis gaditana

Overview
NameEWM20844.1
Unique Namecds9829
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:286462..287072 -
Alignment locationKK037256.1:286101..286217 -
Alignment locationKK037256.1:285772..285889 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20844.1
Productprolyl 4-hydroxylase alpha-1 subunit precursor
Orig transcript idgnl|cribi|Naga_101456g1.2864.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:286462..287072 -
KK037256.1supercontigKK037256.1:286101..286217 -
KK037256.1supercontigKK037256.1:285772..285889 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Homology
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|585100777|gb|EWM20844.1| (prolyl 4-hydroxylase alpha-1 subunit precursor [Nannochloropsis gaditana])

HSP 1 Score: 525.013 bits (1351), Expect = 0.000e+0
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query:    1 MPATGHEQQHLHDAEPHGDVQPPPMDSGGHKQHDGPGDRSQPPPFSRLASPLLPGHAAFAPVLLPPVTPLPLSSSCAPATQPLSTFPPPAVPARPALPPSFPPSAASSLLPSAGTSSSFPSPDPSCFLPTLSMAAALASSPATSSGVSLPPLPSAPPSLPPSLPPSLPPPPLPFPPPRTTLAGQYLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281
            MPATGHEQQHLHDAEPHGDVQPPPMDSGGHKQHDGPGDRSQPPPFSRLASPLLPGHAAFAPVLLPPVTPLPLSSSCAPATQPLSTFPPPAVPARPALPPSFPPSAASSLLPSAGTSSSFPSPDPSCFLPTLSMAAALASSPATSSGVSLPPLPSAPPSLPPSLPPSLPPPPLPFPPPRTTLAGQYLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR
Sbjct:    1 MPATGHEQQHLHDAEPHGDVQPPPMDSGGHKQHDGPGDRSQPPPFSRLASPLLPGHAAFAPVLLPPVTPLPLSSSCAPATQPLSTFPPPAVPARPALPPSFPPSAASSLLPSAGTSSSFPSPDPSCFLPTLSMAAALASSPATSSGVSLPPLPSAPPSLPPSLPPSLPPPPLPFPPPRTTLAGQYLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281          
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|1210528197|dbj|GAX13312.1| (hypothetical protein FisN_17Hh253 [Fistulifera solaris])

HSP 1 Score: 119.783 bits (299), Expect = 9.049e-29
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 0
Query:  185 YLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281
            Y  +NP +PGL+++   PP++ +ENFL P EC  LI AA   L PAPVVG G GE+S SRTSSTCYLARED+  L+ KV LLTGKPP   ELPQVGR
Sbjct:    6 YNGVNPSYPGLRVLNNSPPIFAVENFLTPYECDFLIHAAVDALGPAPVVGKGAGEISPSRTSSTCYLAREDLGDLMRKVSLLTGKPPEHCELPQVGR 102          
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|1210513681|dbj|GAX27364.1| (hypothetical protein FisN_17Lh253 [Fistulifera solaris])

HSP 1 Score: 119.398 bits (298), Expect = 9.949e-29
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 0
Query:  185 YLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281
            Y  +NP +PGL+++   PP++ +ENFL P EC  LI AA   L PAPVVG G GE+S SRTSSTCYLARED+  L+ KV LLTGKPP   ELPQVGR
Sbjct:    6 YNGVNPSYPGLRVLNNSPPIFAVENFLTPYECDFLIHAAVDGLGPAPVVGKGAGEISPSRTSSTCYLAREDLGDLMRKVTLLTGKPPEHCELPQVGR 102          
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|676385359|ref|XP_009035958.1| (hypothetical protein AURANDRAFT_14928, partial [Aureococcus anophagefferens] >gi|323454062|gb|EGB09933.1| hypothetical protein AURANDRAFT_14928, partial [Aureococcus anophagefferens])

HSP 1 Score: 114.39 bits (285), Expect = 1.433e-27
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 0
Query:  202 PPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281
            PP+Y ++NFL  +EC ALI +A   + PAPVVG GNGE+S SRTSSTCYLARED+PS+ +KVC LTGKP   +ELPQVGR
Sbjct:    1 PPIYTVQNFLTEEECDALIDSAKDHMTPAPVVGPGNGEVSVSRTSSTCYLAREDLPSVCTKVCALTGKPLEHLELPQVGR 80          
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|298712929|emb|CBJ26831.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.227 bits (269), Expect = 3.772e-24
Identity = 50/91 (54.95%), Postives = 68/91 (74.73%), Query Frame = 0
Query:  191 LFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281
            L+PGL+ +   PP+Y++++F    EC ALI  A  ++I +PVVGAG GE+S SRTSS+C+LARED+P++  KV  LTGKP   +ELPQVGR
Sbjct:   90 LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVGR 180          
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|224006045|ref|XP_002291983.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220972502|gb|EED90834.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 103.605 bits (257), Expect = 1.124e-23
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 0
Query:  202 PPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281
            PPV+ +ENFL P EC  LI A++  L PAPVVG G GE+S SRTSSTCYLARED+P  L KV +LTGKP    ELPQVGR
Sbjct:    1 PPVFSVENFLTPAECDFLIHASNDALGPAPVVGKGAGEVSPSRTSSTCYLAREDLPEYLRKVGVLTGKPAEHCELPQVGR 80          
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|1072223559|gb|OEU08314.1| (hypothetical protein FRACYDRAFT_153725, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 98.2117 bits (243), Expect = 1.368e-21
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 0
Query:  202 PPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281
            PP+Y+++ FL  DE Q LI AAS    PAPVVG G+G +S +RTSSTCYLARED+P L  KV  LT  P   +ELPQVGR
Sbjct:    1 PPIYIVDQFLNDDETQFLIDAASDSFTPAPVVGVGSGVISDTRTSSTCYLAREDLPDLARKVSALTQTPITHLELPQVGR 80          
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|219123691|ref|XP_002182153.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406114|gb|EEC46054.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 97.0561 bits (240), Expect = 5.936e-21
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0
Query:  202 PPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPSLLSKVCLLTGKPPHDIELPQVGR 281
            PP++ ++NFL P EC+ LI  A     PAPVVG G GE+S SRTSSTCYL+RED+P L+ KV  LTGKP    ELPQVGR
Sbjct:    6 PPMFAVDNFLTPLECEFLIHMAQDSFGPAPVVGKGAGEVSPSRTSSTCYLSREDLPDLMRKVSSLTGKPIEHCELPQVGR 85          
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|922853399|gb|KOO22018.1| (prolyl 4-hydroxylase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 91.2781 bits (225), Expect = 1.739e-17
Identity = 56/133 (42.11%), Postives = 71/133 (53.38%), Query Frame = 0
Query:  151 PLPSAPPSLPPSLPPSLPPPPLPFPPPRTTLAGQYLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLAREDVPS--LLSKVCLLTGKPPHDIELPQVGR 281
            P  SA P   PS P    P  + +PP        +L LN  +PGLK ++  PPVYL+E+FL  +ECQALI  A   L  +    A   E +  RTS TC+LA+   P   LL K+  LT KP   +ELPQV R
Sbjct:   51 PTKSAHPRDRPSQPHCDLPLVVEYPPEAVRDGFTFLQLNADYPGLKRVHDSPPVYLVEDFLTDEECQALIETAGPLLQRSKTHAAAGSEATKGRTSLTCHLAKHVYPCPILLKKIHNLTNKPYGHMELPQVAR 183          
BLAST of EWM20844.1 vs. NCBI_GenBank
Match: gi|551622537|ref|XP_005791597.1| (hypothetical protein EMIHUDRAFT_439880 [Emiliania huxleyi CCMP1516] >gi|485645555|gb|EOD39168.1| hypothetical protein EMIHUDRAFT_439880 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 85.5001 bits (210), Expect = 1.436e-15
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 0
Query:  185 YLPLNPLFPGLKLIYAQPPVYLIENFLPPDECQALIMAASGFLIPAPVVGAGNGELSGSRTSSTCYLARED--VPSLLSKVCLLTGKPPHDIELPQVGR 281
            Y+PLN  +PGLK I+ QPP+Y+  +FL  DEC AL+  A+  L  +        E +  RTS TC+L+++    P+LLSK+  LTGKP   +ELPQV R
Sbjct:   27 YMPLNMGYPGLKRIHEQPPIYVCHDFLSDDECAALMQVATPLLQRSKTHAVAGSEATRGRTSLTCHLSKKADPCPALLSKIQALTGKPFDHMELPQVAR 125          
The following BLAST results are available for this feature:
BLAST of EWM20844.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100777|gb|EWM20844.1|0.000e+0100.00prolyl 4-hydroxylase alpha-1 subunit precursor [Na... [more]
gi|1210528197|dbj|GAX13312.1|9.049e-2961.86hypothetical protein FisN_17Hh253 [Fistulifera sol... [more]
gi|1210513681|dbj|GAX27364.1|9.949e-2961.86hypothetical protein FisN_17Lh253 [Fistulifera sol... [more]
gi|676385359|ref|XP_009035958.1|1.433e-2766.25hypothetical protein AURANDRAFT_14928, partial [Au... [more]
gi|298712929|emb|CBJ26831.1|3.772e-2454.95conserved unknown protein [Ectocarpus siliculosus][more]
gi|224006045|ref|XP_002291983.1|1.124e-2366.25predicted protein, partial [Thalassiosira pseudona... [more]
gi|1072223559|gb|OEU08314.1|1.368e-2160.00hypothetical protein FRACYDRAFT_153725, partial [F... [more]
gi|219123691|ref|XP_002182153.1|5.936e-2161.25predicted protein, partial [Phaeodactylum tricornu... [more]
gi|922853399|gb|KOO22018.1|1.739e-1742.11prolyl 4-hydroxylase [Chrysochromulina sp. CCMP291... [more]
gi|551622537|ref|XP_005791597.1|1.436e-1545.45hypothetical protein EMIHUDRAFT_439880 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9860rna9860Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications