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Properties
| Property Name | Value |
|---|
| Product | Histone deacetylase domain protein |
| Orig transcript id | gnl|cribi|Naga_100496g6.5227.mrna |
| Orig protein id | gnl|cribi|Naga_100496g6.5227 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037256.1 | supercontig | KK037256.1:274721..276435 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9856 ID=rna9856|Name=rna9856|organism=Nannochloropsis gaditana|type=mRNA|length=1492bp
TTTTTTTTAAAAGCCTGTGCGTTGTAGTGCCGACACACACGCACACTGTG
TGCAGGCAGACAACGCTTGGATATCGTTTCCCTCCAAATAATGTGAAAGT
TGAAAAAGCGTGCGTGGACCACCTCCTTCAAGCAGGTGCAAGCCCATTCC
TGTAGTAAAGTGACAGGACCAGTACGCGGAGCATATGTCTGAAGTGCGCC
ATAACAGCTTTAGCGTGACCGAATCTCATACTACACAAACTCTTCCGTGT
ACTGGCAGGAGGCATTCCCCTTGACTCCTGAGCCGGGCAGCGGGTCTCGC
CTCTCTCTCATCAAACTCAAGTGTGATTACTCCTTGGCCCCGTCACCTCT
AAAGGCAGACGCCGCAGGACGCAGCACAGAGTAGGAATTTGCGAAACTAT
TGCCATTCAAATACCCGCTGGCGGGAGACATTGCATGAAGATGGGCGAGA
GTAACAGGAGCATAAAGAGGCATAGCGTACGGCTGAGGAGTATGCAATCA
GCTGGGACAGCCGACGTCACGCACGAGGGTGGCAAGGACCCATTCGAATC
AACATTAAGCCCACGCAGCAAAACAAGACGACGCCAAGGCTCTTGCGCCG
CCTTTTCACGCGCTTTCCCCCCCAGTGTCGTCCTAGGTGCGGTCCTCCAC
CTCCTCCTTCCCTCCGGGGCTCGCTCTCTCTCGAGCCCGGAATACCCCTC
CTTCCCACCGTCCTCCGGCTCTTTCCCCTCCTCCTCCGCACACGAGTACA
TTTCTCCTTCCTTCCCTTCCCCGGAGCCGCCCCTTCCCCAGGCTGGCCAC
CATCCTCCCTACCTCCCCCCCCGTCCCCCCCCCTTCGCCCTCCCTTCCCC
TCCTTCCCCTTCCGGCCCCATCGCGGCTTTCCTGCGCACGCTTCCCGAGA
AAGACCCAGCCGAAGTGGCCTCTCGCTGTCTGGCGCCTCTGCTGGACACC
GTCGTCGATGCGAACGAACGGTTGCAGCAGGCAGGCGCCCAACCTCCTCC
TCGCAAAGCTATTTTCCGGCTCCAGCGTCGACCTTCCCTTTCCATCAAGA
CCTACCTCTCCCGCATTGTCGAGATCACTGGGCCTTCCACCCGTTGTCTC
ATCACGGCCTTGATTTATCTAGATCGCATCTCCGCCAAGGAATACCCCTC
TTCTTTAACAGTGCATCGTCTCCTCTTGGCCGCTGTCATGCTAGCTGCGA
AGCACACCGGAGACGGCAACAGCTCCTGGTCTTACGACATCTACACAAGG
GCCACAGGCGTGCCTGTAGTTGAGCTCAAGATTCTCGAAATGGAGATGCT
TCGGATGTTGCAGTACGACCTTGTCGTCCCGCCCCATCAATTGTTTGCTT
ACGGAACGAAAGCCTTGCAGTACAAAAAGCTCCCTGTATTCCGACAAGAG
AGTCCCTGAGGCTTCATGTAGTACACACATGATTTCCCTTTCCCGTTTTT
TGTGGGAGCAGAAAGAAGAAATCAAAAACTGGCAGTGCAGAA back to topprotein sequence of rna9856 >rna9856-protein ID=rna9856-protein|Name=rna9856|organism=Nannochloropsis gaditana|type=polypeptide|length=296bp
PRPPSLPPSLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPT
ATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERYDRVAVVS
LHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVH
GFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELV
GKPGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEA
VLSVVGALLDPGREEEEGREEGREGGKEGVGEGGGVQTTLECRTSQ back to topmRNA from alignment at KK037256.1:274721..276435+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9856 ID=rna9856|Name=rna9856|organism=Nannochloropsis gaditana|type=mRNA|length=1715bp|location=Sequence derived from alignment at KK037256.1:274721..276435+ (Nannochloropsis gaditana)
CCccgacccccctccctcccgccctccctcccgccctccctcctggcctc
ggAGCAACGCGTCCTGTCGAGCCTTTACCTCGCCACGGACCACCTCTTAG
CTGGTCGAAAACGGAACGCCCTCTgcttcgtcccctcctcctcccccaca
gccacgtcttcctcccaccactTGGTGGGGCCCACTGGCTacctgccccc
gccctccctcccgccctccctcccgccctccctgctcaacccggtggcgg
ccgccgctgctCGGGCCTCAGAGCGCTACGACCGGGTGGCGGTGGTCTCC
CTCCATGAAAAGCGCGcgaaagggacggaggattGCTTAAGGTGGGTGCA
ACAAGGACGTACGACGCACGGGATCATCCAggtcttttccctctttgggg
aagcgggaggggaggaagggagggagggcggggcagaggaTGGGGTCCAC
GGCTTCAGCCTGGCgccaggacgggaggagggcgggaaggaaggtgggag
ggaggaagcggtacGGCGGACGGTGGAAGaagccttccttccccgcctcc
aagccTATTCCCCTCAATTTATGTTCCTGTCGTGGGGCTTGGAACTGGTG
GGAAAGcccgggaagggagggggatggaaggggaaggaggtcggGCGGGT
GACCCAGCAGGTCTTGCGCGCCATGGATGcctgtggagggggaaaggtga
tagtggtggtggagggagcgggagagggcgggaaggaggaagaggaggcg
gtgctgAGCGTGGTCGGGGCCTTACTGGACccgggccgggaggaggagga
agggagggaggaagggagggagggcgggaaggagggcgtaggggagggcg
ggggtgtACAGACGACCCTGGAGTGCCGGACGAGCCAATGAGAGGCAAAG
TGCAAGCGGCAAATGCGAGCAAGCGGCAGGAGCTCTGGTGGCATCCGCCA
TGGGGAAAGGCAAGTCTCGGATCATCCTCCCGGGGCGAAGCTACACTGTA
AACTCCCAGGAGAGTCCTCCGAGGGTACCCGGTTGTGGGGACGAAACGAT
GTGGGGACGAAACGGGGGCCCAGCCGACTCGGTGGCGGGAGGtacagagg
aggacgatatAAAAAGGTAAAATTTCCAAAGCACTAGGCCAGCCACCGGC
ACAATATATAAATAAATAAATACTGCGATCCACATATGCAAAGAAGGTGT
AAACCCGGGAGGGCTAGGGAGGGTCAGAGGGAGAAGTAGCATGAAAGCGC
AGGGCAATGAAACGCGTGGGGGAAACCCGAAAACCAACCAAGAATCGACG
GCCGTGGTATCGTgcgcgggaaggaaaagagggggagggtgttgAGAAAT
TTAAAGTCGTGGTCATTCTGTGAGTATGTGTCCCCcgtggagagaaggag
cgaaTTTAAAGCTAAACTACCTGACAGCATTGCTGTTGTTGCCTCCCTTG
CCATGCTCGGTTTGGGCAGTTTGAGTCCATGCCCGGGAGCTGTCTCCTAG
GAGGCCATCGCCCACGTGAACAAGCGAATCGATACAAATTATGATCCCGT
CGGCCCCTTTCAGCCCAACTGATGACAAAAAGCCAGGCTTCTATTCACGT
TTATTTAATTTTTAGAAAGCGCACGCAAGAAGCAAAACCCTGCAAGCTTA
TTGCTCATACATATATATTGGATGTAAAGAGCAAGTTTGTCCGGTGGCGA
caccttcatccctcc back to topCoding sequence (CDS) from alignment at KK037256.1:274721..276435+ >rna9856 ID=rna9856|Name=rna9856|organism=Nannochloropsis gaditana|type=CDS|length=891bp|location=Sequence derived from alignment at KK037256.1:274721..276435+ (Nannochloropsis gaditana)
CCccgacccccctccctcccgccctccctcccgccctccctcctggcctc
ggAGCAACGCGTCCTGTCGAGCCTTTACCTCGCCACGGACCACCTCTTAG
CTGGTCGAAAACGGAACGCCCTCTgcttcgtcccctcctcctcccccaca
gccacgtcttcctcccaccactTGGTGGGGCCCACTGGCTacctgccccc
gccctccctcccgccctccctcccgccctccctgctcaacccggtggcgg
ccgccgctgctCGGGCCTCAGAGCGCTACGACCGGGTGGCGGTGGTCTCC
CTCCATGAAAAGCGCGcgaaagggacggaggattGCTTAAGGTGGGTGCA
ACAAGGACGTACGACGCACGGGATCATCCAggtcttttccctctttgggg
aagcgggaggggaggaagggagggagggcggggcagaggaTGGGGTCCAC
GGCTTCAGCCTGGCgccaggacgggaggagggcgggaaggaaggtgggag
ggaggaagcggtacGGCGGACGGTGGAAGaagccttccttccccgcctcc
aagccTATTCCCCTCAATTTATGTTCCTGTCGTGGGGCTTGGAACTGGTG
GGAAAGcccgggaagggagggggatggaaggggaaggaggtcggGCGGGT
GACCCAGCAGGTCTTGCGCGCCATGGATGcctgtggagggggaaaggtga
tagtggtggtggagggagcgggagagggcgggaaggaggaagaggaggcg
gtgctgAGCGTGGTCGGGGCCTTACTGGACccgggccgggaggaggagga
agggagggaggaagggagggagggcgggaaggagggcgtaggggagggcg
ggggtgtACAGACGACCCTGGAGTGCCGGACGAGCCAATGA back to top
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