EWM20846.1, cds9825 (CDS) Nannochloropsis gaditana

Overview
NameEWM20846.1
Unique Namecds9825
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:274721..275611 +

Link to JBrowse

Properties
Property NameValue
Start range274721
Start range.
Protein idEWM20846.1
ProductHistone deacetylase domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100496g6.5227.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:274721..275611 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023801His_deacetylse_dom
Homology
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|585100782|gb|EWM20846.1| (Histone deacetylase domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query:    1 PRPPSLPPSLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERYDRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGKPGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLDPGREEEEGREEGREGGKEGVGEGGGVQTTLECRTSQ 296
            PRPPSLPPSLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERYDRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGKPGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLDPGREEEEGREEGREGGKEGVGEGGGVQTTLECRTSQ
Sbjct:    1 PRPPSLPPSLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERYDRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGKPGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLDPGREEEEGREEGREGGKEGVGEGGGVQTTLECRTSQ 296          
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|224000083|ref|XP_002289714.1| (histone deacetylase 1 HDAC Hda1p [Thalassiosira pseudonana CCMP1335] >gi|220974922|gb|EED93251.1| histone deacetylase 1 HDAC Hda1p [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-9
Identity = 62/233 (26.61%), Postives = 99/233 (42.49%), Query Frame = 0
Query:   20 RVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPP-SLPPSLLNPVA--AAAARASERYD---RVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGKPGKGGGWKG---KEVGRVTQQVLRAMDACGGGKVIVVVEGAGEG 243
            R   S+  A D +++G  RNA C        A     H  GP G +  P+ P  S    LLN VA  AA AR+  R D   +VA++        GTED +R +           VF       G   RE           +  G ++    G +   +R +  +  +P L  ++P  +F+S G +   K     G+ G   ++   +T+Q+++  + C  G+V+ V+EG  EG
Sbjct:  333 RAAGSVCEAVDKVMSGDFRNAFC--------AVRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNVAIGAAYARSMYRNDGIKKVAIIDFDVHHGNGTEDIVRQITP--------IVFFASTHGYGPRDRE-----------IPAGADDTYNHGLQRLELRDSYRKNVIPALLDFNPDMIFISAGFDAHRKDTMNFGYVGMIEEDYEWLTEQLVKVANTCCNGRVVSVLEGGDEG 538          
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|1054745873|ref|WP_066510359.1| (acetoin utilization protein [Bradyrhizobium sp. BR 10303] >gi|983694823|gb|KWV51762.1| acetoin utilization protein [Bradyrhizobium sp. BR 10303])

HSP 1 Score: 64.3142 bits (155), Expect = 3.318e-8
Identity = 69/235 (29.36%), Postives = 99/235 (42.13%), Query Frame = 0
Query:   28 ATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGK-PGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALL 259
            ATD ++ G+ RNA   V      A  S+     P G+               +  A AA  A  +Y   R AVV        GT+D   W           Q+  LF   G    R  G  D +    LAP  E+G          R   E   LPRLQ +SP+ + +S G +   + P      KG++ G VT++++   D   GG+V+ V+EG G   +  +E+V S VGAL+
Sbjct:  102 ATDAVMTGQHRNAFVAVRPPGHHAEKST-----PMGF------------CFFDNAAIAARYAQRKYGIARAAVVDFDVHHGNGTQDIF-WADPTVMYCSTHQM-PLFPGTGAMGER--GEHDTIVNAPLAP--EDGSAR------FRAAFENLILPRLQQFSPELIIISAGFDAHHRDPLASINLKGEDFGWVTRKLIDVADKSAGGRVVSVLEG-GYDLQGLKESVASHVGALM 306          
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|913418861|ref|WP_050402356.1| (acetoin utilization protein [Bradyrhizobium embrapense])

HSP 1 Score: 62.003 bits (149), Expect = 1.879e-7
Identity = 71/257 (27.63%), Postives = 111/257 (43.19%), Query Frame = 0
Query:    9 SLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQ---QGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGK-PGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALL 259
            S+ P    +  R +     ATD ++AG+ +NA   V      A  S+     P G+               + VA AA  A  +Y   R A++        GT+D   W        +TH +  +F   G AG     E G  D V    LAPG  +GG +       R   E   LP+L+ +SP+ + +S G +   + P       G++ G VT++++   D   GG+V+ V+EG G   +  +E+V S V AL+
Sbjct:   83 SMSPGTWEAVMRGVGGAVAATDAVMAGKHQNAFVAVRPPGHHAEKST-----PMGF------------CFFDNVAIAARHAQRKYGIKRAAIIDFDVHHGNGTQDIF-WADPTVMYCSTHQM-PLFPGTGAAG-----ERGEHDTVVNAPLAPG--DGGAK------FRAAFENLILPQLEKFSPELVVISAGFDAHHRDPLASINLTGEDFGWVTRKLMDLADKSAGGRVVSVLEG-GYDLEGLKESVASHVTALM 306          
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|654882683|ref|WP_028334493.1| (MULTISPECIES: acetoin utilization protein [Bradyrhizobium])

HSP 1 Score: 61.2326 bits (147), Expect = 3.681e-7
Identity = 70/258 (27.13%), Postives = 110/258 (42.64%), Query Frame = 0
Query:    9 SLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQ---QGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGK-PGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLD 260
            S+ P    +  R +     ATD ++ G+ +NA   V      A  S+     P G+               +  A AA  A  +Y   R A++        GT+D   W        +TH +  +F   G AG     E G  D V    LAPG  +GG +       R   E   LP+L+ +SP+ + +S G +   + P       G++ G VT++++   D   GG+V+ V+EG G   +  +E+V S V AL+D
Sbjct:   83 SMSPGTWEAVMRGVGGAVAATDAVMEGKHQNAFVAVRPPGHHAEKST-----PMGF------------CFFDNAAIAARHAQRKYGIKRAAIIDFDVHHGNGTQDIF-WADPTVMYCSTHQM-PLFPGTGAAG-----ERGEHDTVVNAPLAPG--DGGAK------FRSAFENLILPQLEKFSPELVVISAGFDAHHRDPLASINLTGEDFGWVTRKLMDLADKSAGGRVVSVLEG-GYDLQGLKESVASHVTALMD 307          
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|654887787|ref|WP_028339499.1| (acetoin utilization protein [Bradyrhizobium elkanii])

HSP 1 Score: 60.8474 bits (146), Expect = 4.690e-7
Identity = 70/258 (27.13%), Postives = 110/258 (42.64%), Query Frame = 0
Query:    9 SLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQ---QGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGK-PGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLD 260
            S+ P    +  R +     ATD ++ G+ +NA   V      A  S+     P G+               +  A AA  A  +Y   R A++        GT+D   W        +TH +  +F   G AG     E G  D V    LAPG  +GG +       R   E   LP+L+ +SP+ + +S G +   + P       G++ G VT++++   D   GG+V+ V+EG G   +  +E+V S V AL+D
Sbjct:   83 SMSPGTWEAVMRGVGGAVAATDAVMEGKHQNAFVAVRPPGHHAEKST-----PMGF------------CFFDNAAIAARHAQRKYGIKRAAIIDFDVHHGNGTQDIF-WADPTVMYCSTHQM-PLFPGTGAAG-----ERGEHDTVVNAPLAPG--DGGAK------FRSAFENLILPQLERFSPELVVISAGFDAHHRDPLASINLTGEDFGWVTRKLMDLADKSAGGRVVSVLEG-GYDLQGLKESVASHVTALMD 307          
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|1131030278|ref|WP_075789852.1| (acetoin utilization protein [Rhodovulum sulfidophilum] >gi|1130017339|gb|OLS53380.1| acetoin utilization protein [Rhodovulum sulfidophilum])

HSP 1 Score: 60.4622 bits (145), Expect = 6.543e-7
Identity = 50/165 (30.30%), Postives = 76/165 (46.06%), Query Frame = 0
Query:   78 LLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLEL-VGKPGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEG 239
            L + +A AA  A +RY   RVAVV        GT+D L W  + RT         L+   G  E  E GA + V    LAP      +  GR  A R   E   LPRL+A++P+ + +S G +     P     W+ ++ G +T ++    +   GG+++  +EG
Sbjct:  136 LFSNIAIAAKYALDRYGLARVAVVDFDVHHGNGTQDLL-W-SEPRTLFVSSHQMPLYPGTG--EAAETGAANNVLNLPLAP------RSDGR--AFRAAFEAHALPRLEAFAPELVLVSAGFDAHAADPLAELAWRTEDFGWITHRLCDIAETHSGGRLVSTLEG 288          
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|1173944541|gb|OQR93266.1| (FYVE-type zinc finger-containing protein [Achlya hypogyna])

HSP 1 Score: 61.2326 bits (147), Expect = 7.617e-7
Identity = 72/253 (28.46%), Postives = 101/253 (39.92%), Query Frame = 0
Query:   24 SLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAA--ARASERYDRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVF--SLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLE-----------LVGKPGKG-GGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLD 260
            S+ LA D +L G  +NA+C V           HH VG  G  P     PS    LLN V   A  AR      RVAV+        GTE+ LR     R+    + +F    F   G           G+    L  G           EA R+ + E  LP ++A+ P  +F+S G +            VGK      G+   +    T++VL+  D C  G+VI V+EG G   + E  ++   V A +D
Sbjct:  983 SVCLAVDKVLGGEFKNAVCLV-------RPPGHH-VGRNGRTPNA---PSSGFCLLNNVVIGALHARMHPSVVRVAVLDWDIHHGNGTEELLR--GDPRSFFASVHLFVNHFFPGTGPSAADANVVNVGLGDTGLGSG----------SEAFRQALSETVLPAMEAFRPDIIFISAGFDGHKDDIIGGQAAVGKNSVAPAGYVEADYAWATKEVLKLADRCCNGRVISVLEG-GYDVRHETNSLAKSVAAHID 1211          
The following BLAST results are available for this feature:
BLAST of EWM20846.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585100782|gb|EWM20846.1|0.000e+0100.00Histone deacetylase domain protein, partial [Nanno... [more]
gi|224000083|ref|XP_002289714.1|9.836e-926.61histone deacetylase 1 HDAC Hda1p [Thalassiosira ps... [more]
gi|1054745873|ref|WP_066510359.1|3.318e-829.36acetoin utilization protein [Bradyrhizobium sp. BR... [more]
gi|913418861|ref|WP_050402356.1|1.879e-727.63acetoin utilization protein [Bradyrhizobium embrap... [more]
gi|654882683|ref|WP_028334493.1|3.681e-727.13MULTISPECIES: acetoin utilization protein [Bradyrh... [more]
gi|654887787|ref|WP_028339499.1|4.690e-727.13acetoin utilization protein [Bradyrhizobium elkani... [more]
gi|1131030278|ref|WP_075789852.1|6.543e-730.30acetoin utilization protein [Rhodovulum sulfidophi... [more]
gi|1173944541|gb|OQR93266.1|7.617e-728.46FYVE-type zinc finger-containing protein [Achlya h... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9856rna9856Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications