EWM20846.1, cds9825 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|585100782|gb|EWM20846.1| (Histone deacetylase domain protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0 Query: 1 PRPPSLPPSLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERYDRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGKPGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLDPGREEEEGREEGREGGKEGVGEGGGVQTTLECRTSQ 296 PRPPSLPPSLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERYDRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGKPGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLDPGREEEEGREEGREGGKEGVGEGGGVQTTLECRTSQ Sbjct: 1 PRPPSLPPSLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERYDRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGKPGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLDPGREEEEGREEGREGGKEGVGEGGGVQTTLECRTSQ 296
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|224000083|ref|XP_002289714.1| (histone deacetylase 1 HDAC Hda1p [Thalassiosira pseudonana CCMP1335] >gi|220974922|gb|EED93251.1| histone deacetylase 1 HDAC Hda1p [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-9 Identity = 62/233 (26.61%), Postives = 99/233 (42.49%), Query Frame = 0 Query: 20 RVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPP-SLPPSLLNPVA--AAAARASERYD---RVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGKPGKGGGWKG---KEVGRVTQQVLRAMDACGGGKVIVVVEGAGEG 243 R S+ A D +++G RNA C A H GP G + P+ P S LLN VA AA AR+ R D +VA++ GTED +R + VF G RE + G ++ G + +R + + +P L ++P +F+S G + K G+ G ++ +T+Q+++ + C G+V+ V+EG EG Sbjct: 333 RAAGSVCEAVDKVMSGDFRNAFC--------AVRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNVAIGAAYARSMYRNDGIKKVAIIDFDVHHGNGTEDIVRQITP--------IVFFASTHGYGPRDRE-----------IPAGADDTYNHGLQRLELRDSYRKNVIPALLDFNPDMIFISAGFDAHRKDTMNFGYVGMIEEDYEWLTEQLVKVANTCCNGRVVSVLEGGDEG 538
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|1054745873|ref|WP_066510359.1| (acetoin utilization protein [Bradyrhizobium sp. BR 10303] >gi|983694823|gb|KWV51762.1| acetoin utilization protein [Bradyrhizobium sp. BR 10303]) HSP 1 Score: 64.3142 bits (155), Expect = 3.318e-8 Identity = 69/235 (29.36%), Postives = 99/235 (42.13%), Query Frame = 0 Query: 28 ATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGK-PGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALL 259 ATD ++ G+ RNA V A S+ P G+ + A AA A +Y R AVV GT+D W Q+ LF G R G D + LAP E+G R E LPRLQ +SP+ + +S G + + P KG++ G VT++++ D GG+V+ V+EG G + +E+V S VGAL+ Sbjct: 102 ATDAVMTGQHRNAFVAVRPPGHHAEKST-----PMGF------------CFFDNAAIAARYAQRKYGIARAAVVDFDVHHGNGTQDIF-WADPTVMYCSTHQM-PLFPGTGAMGER--GEHDTIVNAPLAP--EDGSAR------FRAAFENLILPRLQQFSPELIIISAGFDAHHRDPLASINLKGEDFGWVTRKLIDVADKSAGGRVVSVLEG-GYDLQGLKESVASHVGALM 306
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|913418861|ref|WP_050402356.1| (acetoin utilization protein [Bradyrhizobium embrapense]) HSP 1 Score: 62.003 bits (149), Expect = 1.879e-7 Identity = 71/257 (27.63%), Postives = 111/257 (43.19%), Query Frame = 0 Query: 9 SLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQ---QGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGK-PGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALL 259 S+ P + R + ATD ++AG+ +NA V A S+ P G+ + VA AA A +Y R A++ GT+D W +TH + +F G AG E G D V LAPG +GG + R E LP+L+ +SP+ + +S G + + P G++ G VT++++ D GG+V+ V+EG G + +E+V S V AL+ Sbjct: 83 SMSPGTWEAVMRGVGGAVAATDAVMAGKHQNAFVAVRPPGHHAEKST-----PMGF------------CFFDNVAIAARHAQRKYGIKRAAIIDFDVHHGNGTQDIF-WADPTVMYCSTHQM-PLFPGTGAAG-----ERGEHDTVVNAPLAPG--DGGAK------FRAAFENLILPQLEKFSPELVVISAGFDAHHRDPLASINLTGEDFGWVTRKLMDLADKSAGGRVVSVLEG-GYDLEGLKESVASHVTALM 306
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|654882683|ref|WP_028334493.1| (MULTISPECIES: acetoin utilization protein [Bradyrhizobium]) HSP 1 Score: 61.2326 bits (147), Expect = 3.681e-7 Identity = 70/258 (27.13%), Postives = 110/258 (42.64%), Query Frame = 0 Query: 9 SLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQ---QGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGK-PGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLD 260 S+ P + R + ATD ++ G+ +NA V A S+ P G+ + A AA A +Y R A++ GT+D W +TH + +F G AG E G D V LAPG +GG + R E LP+L+ +SP+ + +S G + + P G++ G VT++++ D GG+V+ V+EG G + +E+V S V AL+D Sbjct: 83 SMSPGTWEAVMRGVGGAVAATDAVMEGKHQNAFVAVRPPGHHAEKST-----PMGF------------CFFDNAAIAARHAQRKYGIKRAAIIDFDVHHGNGTQDIF-WADPTVMYCSTHQM-PLFPGTGAAG-----ERGEHDTVVNAPLAPG--DGGAK------FRSAFENLILPQLEKFSPELVVISAGFDAHHRDPLASINLTGEDFGWVTRKLMDLADKSAGGRVVSVLEG-GYDLQGLKESVASHVTALMD 307
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|654887787|ref|WP_028339499.1| (acetoin utilization protein [Bradyrhizobium elkanii]) HSP 1 Score: 60.8474 bits (146), Expect = 4.690e-7 Identity = 70/258 (27.13%), Postives = 110/258 (42.64%), Query Frame = 0 Query: 9 SLPPSLLASEQRVLSSLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQ---QGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLELVGK-PGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLD 260 S+ P + R + ATD ++ G+ +NA V A S+ P G+ + A AA A +Y R A++ GT+D W +TH + +F G AG E G D V LAPG +GG + R E LP+L+ +SP+ + +S G + + P G++ G VT++++ D GG+V+ V+EG G + +E+V S V AL+D Sbjct: 83 SMSPGTWEAVMRGVGGAVAATDAVMEGKHQNAFVAVRPPGHHAEKST-----PMGF------------CFFDNAAIAARHAQRKYGIKRAAIIDFDVHHGNGTQDIF-WADPTVMYCSTHQM-PLFPGTGAAG-----ERGEHDTVVNAPLAPG--DGGAK------FRSAFENLILPQLERFSPELVVISAGFDAHHRDPLASINLTGEDFGWVTRKLMDLADKSAGGRVVSVLEG-GYDLQGLKESVASHVTALMD 307
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|1131030278|ref|WP_075789852.1| (acetoin utilization protein [Rhodovulum sulfidophilum] >gi|1130017339|gb|OLS53380.1| acetoin utilization protein [Rhodovulum sulfidophilum]) HSP 1 Score: 60.4622 bits (145), Expect = 6.543e-7 Identity = 50/165 (30.30%), Postives = 76/165 (46.06%), Query Frame = 0 Query: 78 LLNPVAAAAARASERY--DRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVFSLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLEL-VGKPGKGGGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEG 239 L + +A AA A +RY RVAVV GT+D L W + RT L+ G E E GA + V LAP + GR A R E LPRL+A++P+ + +S G + P W+ ++ G +T ++ + GG+++ +EG Sbjct: 136 LFSNIAIAAKYALDRYGLARVAVVDFDVHHGNGTQDLL-W-SEPRTLFVSSHQMPLYPGTG--EAAETGAANNVLNLPLAP------RSDGR--AFRAAFEAHALPRLEAFAPELVLVSAGFDAHAADPLAELAWRTEDFGWITHRLCDIAETHSGGRLVSTLEG 288
BLAST of EWM20846.1 vs. NCBI_GenBank
Match: gi|1173944541|gb|OQR93266.1| (FYVE-type zinc finger-containing protein [Achlya hypogyna]) HSP 1 Score: 61.2326 bits (147), Expect = 7.617e-7 Identity = 72/253 (28.46%), Postives = 101/253 (39.92%), Query Frame = 0 Query: 24 SLYLATDHLLAGRKRNALCFVPSSSPTATSSSHHLVGPTGYLPPPSLPPSLPPSLLNPVAAAA--ARASERYDRVAVVSLHEKRAKGTEDCLRWVQQGRTTHGIIQVF--SLFGEAGGEEGREGGAEDGVHGFSLAPGREEGGKEGGREEAVRRTVEEAFLPRLQAYSPQFMFLSWGLE-----------LVGKPGKG-GGWKGKEVGRVTQQVLRAMDACGGGKVIVVVEGAGEGGKEEEEAVLSVVGALLD 260 S+ LA D +L G +NA+C V HH VG G P PS LLN V A AR RVAV+ GTE+ LR R+ + +F F G G+ L G EA R+ + E LP ++A+ P +F+S G + VGK G+ + T++VL+ D C G+VI V+EG G + E ++ V A +D Sbjct: 983 SVCLAVDKVLGGEFKNAVCLV-------RPPGHH-VGRNGRTPNA---PSSGFCLLNNVVIGALHARMHPSVVRVAVLDWDIHHGNGTEELLR--GDPRSFFASVHLFVNHFFPGTGPSAADANVVNVGLGDTGLGSG----------SEAFRQALSETVLPAMEAFRPDIIFISAGFDGHKDDIIGGQAAVGKNSVAPAGYVEADYAWATKEVLKLADRCCNGRVISVLEG-GYDVRHETNSLAKSVAAHID 1211 The following BLAST results are available for this feature:
BLAST of EWM20846.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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