rna9853, rna9853 (mRNA) Nannochloropsis gaditana

Overview
Namerna9853
Unique Namerna9853
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length291
Alignment locationKK037256.1:268688..270089 -

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-trna hydrolase pth2 domain-containing protein
Orig transcript idgnl|cribi|Naga_100514g3.5677.mrna
Orig protein idgnl|cribi|Naga_100514g3.5677
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:268688..270089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100514g3gene9566Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9853rna9853-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20853.1cds9822Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9853 ID=rna9853|Name=rna9853|organism=Nannochloropsis gaditana|type=mRNA|length=291bp
ATGCAGGTGTCTTTTCCTGACGATTTTTTCTTGGCCAGTGATCCTGACAA
CAGGACATGGCAAGGTCAACAGACGCTGGTGTACCATCTTGCGGCGCAAA
CCATACAGGCATTGATTCGCGGTGTATTGGCACGCGGGGTCAGAAAAGAA
GTGCAACATGATGAACCTGAACGCAATAAAATTGACAGCAGTCGAAGATT
AAAATTAGGAAACAGTGCATCCCAAGGCGTAGATGCCTTTCGAAGCCCGC
CAGGATCATCAACCTTGTCTTCCCTTCCCAGCATCACCTAG
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protein sequence of rna9853

>rna9853-protein ID=rna9853-protein|Name=rna9853|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTG
RRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGP
FKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK
SASKSPIRWSWSGSVSWLLRRS
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mRNA from alignment at KK037256.1:268688..270089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9853 ID=rna9853|Name=rna9853|organism=Nannochloropsis gaditana|type=mRNA|length=1402bp|location=Sequence derived from alignment at KK037256.1:268688..270089- (Nannochloropsis gaditana)
CCACGCAAAATGGGGACGAGATTATCCAGACTTGGGCAGAAGACGAATCG
CTTACCTCGCATTAAACACCAAGCGCCTTGCACACCCTTTTTTACCTCCT
TTCTTTTCCTAGGCAGCCCGTTTATAGGATTCGGAATGCCTCGCAAGGCA
TGGCCCCAGGCTTTTGGTCGGTCATTTTGCGAACGCTAAGTGCATGTACA
CGCACGGAAAATGCGCTTTGACAGTCAATATTCGCACCGATTATGTATTC
ATGAGTTCTTTCAACAATATTATGCCTTAGGGGTGCCGTAGGGGCGGAGC
AGGGTAAAGTGACTGTGGCTGATACCCAGAGGCCTCCAGACTAGTAGCCC
TGATGGCGCTTGAGGCCTGTTCTGGCATTCTTTCCTCCGCATCTACAGCA
TTTCGAGAAGCAAGCTCCACGACCCCGGGATGGATCGTCTTTCTCTCATT
TGGTGCAGGGGCGCTTGTCAGCAGCTTTCTACCAAGCATGCGAAAGACGG
GAAGAAGAAAAAGAGGCCGGCAGTGGCCCTCAGAGGCCTTGGAGGAGGAA
GCGGACGAAGGCAGTGACAGCGAGAGAAGCGACACAGAGGAGTCTGCTGA
TGGAATCACCAGTGCTAAGACGATTCGGGATTTTTCTCTGGTATCTGGCC
CATTCAAAATGGTATTGTGTGTGAACATGGAGCTTTCGATGGGCAAAGGC
AAGATCGCCGCTCAGTGCGGGCACGCGACGTTGGGAGCGTACAAACGGGC
ACGTCGACTGGCTCCCAGGACTCTGCAAGGGTGGGAATACATGGGGTAGG
TGGTGTTGAGGCAGGGGGAACGGGACGCAAAGGAAAGAGGGCTTGGGAAG
GGCGGGAAGAAGGCAAGGAGACACAGCATGGTGGGAGGGAGCTTCGTCAC
CCGGCCCAGAGGGACGGCCTCGCTTGCGCTGGTACGCCAGGGACGCTGCA
TGCCCCTTCAAGAGCTGGTCGAGGCTTGCCAGAGCGTCCTTGACCCTCCA
TCTCGACCCCTGTCTCGTTCTTCCTAGTCCTTGTCTTTCCACGCCCTCCC
GTCTATCCTTTTTCTCTCTCACACACCCACACCCTCCAAACCCCTTTCCC
TTGTTTAGTCAGGCAAAAATCTGCCTCAAAGTCCCCGATCAGGTGGAGCT
GGAGCGGCTCCGTGTCCTGGTTACTAAGGCGCAGTTGATCTCCTATCAGG
TCGAAGACGCTGGCCGGACGCAGATTGCAGCCGGCTCTCAGACAGTTTTG
GCCATCGGACCCGCCCCCGTCCAAGAAATCGACCGCATCACGGGGCACCT
CAAACTGTTGTAGGCCACGCTTTCTGCTCTTGTCAAGGGAAAGGAAAGCC
ATAAATCGAGGGCAGGGATGACCAAATCAAGCATGGCGTCGGTCGCGTAC
CT
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Coding sequence (CDS) from alignment at KK037256.1:268688..270089-

>rna9853 ID=rna9853|Name=rna9853|organism=Nannochloropsis gaditana|type=CDS|length=1038bp|location=Sequence derived from alignment at KK037256.1:268688..270089- (Nannochloropsis gaditana)
GCAAAAATCTGCCTCAAAGTCCCCGATCAGGTGGAGCTGGAGCGGCTCCG
TGTCCTGGTTACTAAGGCGCAGTTGAATGGCGCTTGAGGCCTGTTCTGGC
ATTCTTTCCTCCGCATCTACAGCATTTCGAGAAGCAAGCTCCACGACCCC
GGGATGGATCGTCTTTCTCTCATTTGGTGCAGGGGCGCTTGTCAGCAGCT
TTCTACCAAGCATGCGAAAGACGGGAAGAAGAAAAAGAGGCCGGCAGTGG
CCCTCAGAGGCCTTGGAGGAGGAAGCGGACGAAGGCAGTGACAGCGAGAG
AAGCGACACAGAGGAGTCTGCTGATGGAATCACCAGTGCTAAGACGATTC
GGGATTTTTCTCTGGTATCTGGCCCATTCAAAATGGTATTGTGTGTGAAC
ATGGAGCTTTCGATGGGCAAAGGCAAGATCGCCGCTCAGTGCGGGCACGC
GACGTTGGGAGCGTACAAACGGGCACGTCGACTGGCTCCCAGGACTCTGC
AAGGGTGGGAATACATGGGGCAAAAATCTGCCTCAAAGTCCCCGATCAGG
TGGAGCTGGAGCGGCTCCGTGTCCTGGTTACTAAGGCGCAGTTGAATGGC
GCTTGAGGCCTGTTCTGGCATTCTTTCCTCCGCATCTACAGCATTTCGAG
AAGCAAGCTCCACGACCCCGGGATGGATCGTCTTTCTCTCATTTGGTGCA
GGGGCGCTTGTCAGCAGCTTTCTACCAAGCATGCGAAAGACGGGAAGAAG
AAAAAGAGGCCGGCAGTGGCCCTCAGAGGCCTTGGAGGAGGAAGCGGACG
AAGGCAGTGACAGCGAGAGAAGCGACACAGAGGAGTCTGCTGATGGAATC
ACCAGTGCTAAGACGATTCGGGATTTTTCTCTGGTATCTGGCCCATTCAA
AATGGTATTGTGTGTGAACATGGAGCTTTCGATGGGCAAAGGCAAGATCG
CCGCTCAGTGCGGGCACGCGACGTTGGGAGCGTACAAACGGGCACGTCGA
CTGGCTCCCAGGACTCTGCAAGGGTGGGAATACATGGG
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Synonyms
Publications