EWM20853.1, cds9822 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|585100791|gb|EWM20853.1| (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 345.51 bits (885), Expect = 3.217e-120 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query: 1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQKSASKSPIRWSWSGSVSWLLRRS 172
MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQKSASKSPIRWSWSGSVSWLLRRS
Sbjct: 1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQKSASKSPIRWSWSGSVSWLLRRS 172
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|585100790|gb|EWM20852.1| (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 305.834 bits (782), Expect = 5.941e-104 Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query: 1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ 149
MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ
Sbjct: 1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ 149
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|298710624|emb|CBJ32052.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 82.4185 bits (202), Expect = 9.614e-17 Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 0
Query: 92 RDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ-KSASKSP 156
R +SL GPFK+VL VNM+L MGKGK+ AQC HATLG Y+ + R P L+GWE+MGQ K K P
Sbjct: 39 RAWSLDDGPFKLVLIVNMQLKMGKGKVVAQCCHATLGNYRISERHCPSALRGWEHMGQAKICVKCP 104
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|1005150003|gb|KYF39446.1| (putative peptidyl-tRNA hydrolase, partial [Toxoplasma gondii ARI]) HSP 1 Score: 80.4925 bits (197), Expect = 2.995e-16 Identity = 59/134 (44.03%), Postives = 72/134 (53.73%), Query Frame = 0
Query: 20 ASSTTPGWI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
A + T WI ++LS GA G L ++ L RR R Q S+ + E D SD E D+E+ DG + FKMVLCV +LSMGKGKIAAQCGHATLGAY++A R L W GQK
Sbjct: 13 AEAGTLWWIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE-DGES--------------FKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|672568628|gb|KFH08313.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii MAS]) HSP 1 Score: 80.8777 bits (198), Expect = 7.188e-16 Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 0
Query: 27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
WI ++LS GA G L ++ L RR R Q S+ + E D SD E D+E+ V FKMVLCV +LSMGKGKIAAQCGHATLGAY++A R L W GQK
Sbjct: 20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE---------------VGESFKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|557733496|gb|ESS29647.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii VEG] >gi|672270646|gb|KFG43247.1| putative peptidyl-tRNA hydrolase [Toxoplasma gondii p89]) HSP 1 Score: 80.8777 bits (198), Expect = 7.264e-16 Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 0
Query: 27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
WI ++LS GA G L ++ L RR R Q S+ + E D SD E D+E+ V FKMVLCV +LSMGKGKIAAQCGHATLGAY++A R L W GQK
Sbjct: 20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE---------------VGESFKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|672292443|gb|KFG57870.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii RUB]) HSP 1 Score: 80.4925 bits (197), Expect = 9.166e-16 Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 0
Query: 27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
WI ++LS GA G L ++ L RR R Q S+ + E D SD E D+E+ V FKMVLCV +LSMGKGKIAAQCGHATLGAY++A R L W GQK
Sbjct: 20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREDDTKSDPESGDSEDE---------------VGESFKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|237843923|ref|XP_002371259.1| (peptidyl-tRNA hydrolase, putative [Toxoplasma gondii ME49] >gi|523571361|gb|EPR58250.1| putative peptidyl-tRNA hydrolase [Toxoplasma gondii GT1] >gi|527314768|gb|EPT31385.1| peptidyl-tRNA hydrolase, putative [Toxoplasma gondii ME49] >gi|1008945272|gb|KYK63867.1| putative peptidyl-tRNA hydrolase [Toxoplasma gondii TgCatPRC2]) HSP 1 Score: 80.4925 bits (197), Expect = 9.663e-16 Identity = 57/127 (44.88%), Postives = 69/127 (54.33%), Query Frame = 0
Query: 27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
WI ++LS GA G L ++ L RR R Q S+ + E D SD E D+E+ DG + FKMVLCV +LSMGKGKIAAQCGHATLGAY++A R L W GQK
Sbjct: 20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE-DGES--------------FKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|672254857|gb|KFG30674.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii GAB2-2007-GAL-DOM2] >gi|672264842|gb|KFG38586.1| putative peptidyl-tRNA hydrolase [Toxoplasma gondii FOU]) HSP 1 Score: 80.4925 bits (197), Expect = 9.766e-16 Identity = 57/127 (44.88%), Postives = 69/127 (54.33%), Query Frame = 0
Query: 27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
WI ++LS GA G L ++ L RR R Q S+ + E D SD E D+E+ DG + FKMVLCV +LSMGKGKIAAQCGHATLGAY++A R L W GQK
Sbjct: 20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE-DGES--------------FKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|672558028|gb|KFG99919.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii VAND]) HSP 1 Score: 80.4925 bits (197), Expect = 9.974e-16 Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 0
Query: 27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
WI ++LS GA G L ++ L RR R Q S+ + E D SD E D+E+ V FKMVLCV +LSMGKGKIAAQCGHATLGAY++A R L W GQK
Sbjct: 20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREDDAKSDPESGDSEDE---------------VGESFKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130 The following BLAST results are available for this feature:
BLAST of EWM20853.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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