EWM20853.1, cds9822 (CDS) Nannochloropsis gaditana

Overview
NameEWM20853.1
Unique Namecds9822
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:269295..269737 -
Alignment locationKK037256.1:268902..268977 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20853.1
Productpeptidyl-trna hydrolase pth2 domain-containing protein
Orig transcript idgnl|cribi|Naga_100514g3.5677.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:269295..269737 -
KK037256.1supercontigKK037256.1:268902..268977 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004045aminoacyl-tRNA hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023476Pep_tRNA_hydro_II_dom
IPR002833PTH2
Homology
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|585100791|gb|EWM20853.1| (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 345.51 bits (885), Expect = 3.217e-120
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query:    1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQKSASKSPIRWSWSGSVSWLLRRS 172
            MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQKSASKSPIRWSWSGSVSWLLRRS
Sbjct:    1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQKSASKSPIRWSWSGSVSWLLRRS 172          
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|585100790|gb|EWM20852.1| (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 305.834 bits (782), Expect = 5.941e-104
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ 149
            MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ
Sbjct:    1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ 149          
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|298710624|emb|CBJ32052.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.4185 bits (202), Expect = 9.614e-17
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 0
Query:   92 RDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ-KSASKSP 156
            R +SL  GPFK+VL VNM+L MGKGK+ AQC HATLG Y+ + R  P  L+GWE+MGQ K   K P
Sbjct:   39 RAWSLDDGPFKLVLIVNMQLKMGKGKVVAQCCHATLGNYRISERHCPSALRGWEHMGQAKICVKCP 104          
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|1005150003|gb|KYF39446.1| (putative peptidyl-tRNA hydrolase, partial [Toxoplasma gondii ARI])

HSP 1 Score: 80.4925 bits (197), Expect = 2.995e-16
Identity = 59/134 (44.03%), Postives = 72/134 (53.73%), Query Frame = 0
Query:   20 ASSTTPGWI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
            A + T  WI ++LS GA  G L ++ L       RR R  Q  S+  + E D  SD E  D+E+  DG +              FKMVLCV  +LSMGKGKIAAQCGHATLGAY++A R     L  W   GQK
Sbjct:   13 AEAGTLWWIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE-DGES--------------FKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130          
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|672568628|gb|KFH08313.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii MAS])

HSP 1 Score: 80.8777 bits (198), Expect = 7.188e-16
Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 0
Query:   27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
            WI ++LS GA  G L ++ L       RR R  Q  S+  + E D  SD E  D+E+                V   FKMVLCV  +LSMGKGKIAAQCGHATLGAY++A R     L  W   GQK
Sbjct:   20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE---------------VGESFKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130          
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|557733496|gb|ESS29647.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii VEG] >gi|672270646|gb|KFG43247.1| putative peptidyl-tRNA hydrolase [Toxoplasma gondii p89])

HSP 1 Score: 80.8777 bits (198), Expect = 7.264e-16
Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 0
Query:   27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
            WI ++LS GA  G L ++ L       RR R  Q  S+  + E D  SD E  D+E+                V   FKMVLCV  +LSMGKGKIAAQCGHATLGAY++A R     L  W   GQK
Sbjct:   20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE---------------VGESFKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130          
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|672292443|gb|KFG57870.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii RUB])

HSP 1 Score: 80.4925 bits (197), Expect = 9.166e-16
Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 0
Query:   27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
            WI ++LS GA  G L ++ L       RR R  Q  S+  + E D  SD E  D+E+                V   FKMVLCV  +LSMGKGKIAAQCGHATLGAY++A R     L  W   GQK
Sbjct:   20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREDDTKSDPESGDSEDE---------------VGESFKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130          
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|237843923|ref|XP_002371259.1| (peptidyl-tRNA hydrolase, putative [Toxoplasma gondii ME49] >gi|523571361|gb|EPR58250.1| putative peptidyl-tRNA hydrolase [Toxoplasma gondii GT1] >gi|527314768|gb|EPT31385.1| peptidyl-tRNA hydrolase, putative [Toxoplasma gondii ME49] >gi|1008945272|gb|KYK63867.1| putative peptidyl-tRNA hydrolase [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 80.4925 bits (197), Expect = 9.663e-16
Identity = 57/127 (44.88%), Postives = 69/127 (54.33%), Query Frame = 0
Query:   27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
            WI ++LS GA  G L ++ L       RR R  Q  S+  + E D  SD E  D+E+  DG +              FKMVLCV  +LSMGKGKIAAQCGHATLGAY++A R     L  W   GQK
Sbjct:   20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE-DGES--------------FKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130          
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|672254857|gb|KFG30674.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii GAB2-2007-GAL-DOM2] >gi|672264842|gb|KFG38586.1| putative peptidyl-tRNA hydrolase [Toxoplasma gondii FOU])

HSP 1 Score: 80.4925 bits (197), Expect = 9.766e-16
Identity = 57/127 (44.88%), Postives = 69/127 (54.33%), Query Frame = 0
Query:   27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
            WI ++LS GA  G L ++ L       RR R  Q  S+  + E D  SD E  D+E+  DG +              FKMVLCV  +LSMGKGKIAAQCGHATLGAY++A R     L  W   GQK
Sbjct:   20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREGDAKSDPESGDSEDE-DGES--------------FKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130          
BLAST of EWM20853.1 vs. NCBI_GenBank
Match: gi|672558028|gb|KFG99919.1| (putative peptidyl-tRNA hydrolase [Toxoplasma gondii VAND])

HSP 1 Score: 80.4925 bits (197), Expect = 9.974e-16
Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 0
Query:   27 WI-VFLSFGA--GALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQK 150
            WI ++LS GA  G L ++ L       RR R  Q  S+  + E D  SD E  D+E+                V   FKMVLCV  +LSMGKGKIAAQCGHATLGAY++A R     L  W   GQK
Sbjct:   20 WIFLWLSLGACLGLLAAASLRRFPNISRRPR-LQNASKVTQREDDAKSDPESGDSEDE---------------VGESFKMVLCVRQDLSMGKGKIAAQCGHATLGAYRQAARRQDPFLAPWTMSGQK 130          
The following BLAST results are available for this feature:
BLAST of EWM20853.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100791|gb|EWM20853.1|3.217e-120100.00peptidyl-trna hydrolase pth2 domain-containing pro... [more]
gi|585100790|gb|EWM20852.1|5.941e-104100.00peptidyl-trna hydrolase pth2 domain-containing pro... [more]
gi|298710624|emb|CBJ32052.1|9.614e-1759.09conserved unknown protein [Ectocarpus siliculosus][more]
gi|1005150003|gb|KYF39446.1|2.995e-1644.03putative peptidyl-tRNA hydrolase, partial [Toxopla... [more]
gi|672568628|gb|KFH08313.1|7.188e-1644.09putative peptidyl-tRNA hydrolase [Toxoplasma gondi... [more]
gi|557733496|gb|ESS29647.1|7.264e-1644.09putative peptidyl-tRNA hydrolase [Toxoplasma gondi... [more]
gi|672292443|gb|KFG57870.1|9.166e-1644.09putative peptidyl-tRNA hydrolase [Toxoplasma gondi... [more]
gi|237843923|ref|XP_002371259.1|9.663e-1644.88peptidyl-tRNA hydrolase, putative [Toxoplasma gond... [more]
gi|672254857|gb|KFG30674.1|9.766e-1644.88putative peptidyl-tRNA hydrolase [Toxoplasma gondi... [more]
gi|672558028|gb|KFG99919.1|9.974e-1644.09putative peptidyl-tRNA hydrolase [Toxoplasma gondi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9853rna9853Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications