rna985, rna985 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna985
Unique Name	rna985
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	939
Alignment location	CM002456.1:902508..903963 +

Link to JBrowse

Properties


Property Name	Value
Product	selenium binding protein
Orig transcript id	gnl\|cribi\|Naga_100114g7.2478.mrna
Orig protein id	gnl\|cribi\|Naga_100114g7.2478
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:902508..903963 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100114g7	gene948	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna985	rna985-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29693.1	cds984	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:902508..903963+
coding sequence from alignment at CM002456.1:902508..903963+

mRNA sequence

>rna985 ID=rna985|Name=rna985|organism=Nannochloropsis gaditana|type=mRNA|length=939bp
TAAACCTTCGCGGATCAGGATTGCGCCGCAAATTTCGAATAAAAGCACTG
AAAACACCCACTCCGACAGAACTGTCGTCTTTTTTTGTCGGTAATTCGAC
TACTATGGCCGCTGCTTCAGGCTTGAACAAGGAAGGGAGCTTGGCAGACA
ACATCAGAGGCGTGTTCGACGGTGCCCTCCAACCCGGAGCACGGCCATGT
CTTTTGATAATCGACTTCGTCCAGGCTTATCTGAAGAAGGACTCCCCACT
TTACGCTGGTGTAGAAGATGCTTTGGCTTCAACGAAGCGTTTGCTAGCTC
TTGCGAGGCGTCAGCGGCTCCCTGTGGTTCATACAAGGGTTGAATTCTTG
CCAGGCGGATTAGATGGTGGCATCTTCTTCCGCAAACTACCCCTTCTTAA
AATTTTTGAGAAAGGATCACCTATGGGAAACTTTCATCCAGATGTCATGC
CCCTTCCGAATGAAGTTATCGTAACGAAGCAATATGCTAGCGCCTTTTTC
GGAACCTCCCTGGCGCCAACCCTCAGAGCTCAAGGAGTCGACACCGTGCT
TATTGCGGGACTCTCGACGTCCGGATGCGTCCGCGCCACAGCAACAGATG
CGTGCCAACACGGCTTCATTCCAATCGTTGTTGAGGATGCGGTTGGTGAT
CGACATAATCAGGTCCACGAGTCTAATTTGTTCGATATTAAGGCGAAGTA
CGCTGAGGTCTGGGACGAGGAAGCTGCAAGCATGTACATAAAAAATCGTG
AACAATGAAGCGGCAAAGCTTATTTTGAAAAATCGTACCAATTAAATTTG
AAGCCCGAGTGCATTTACTCGAAGCTCAACGCTCCAGGGAGGAGATTATA
TTTTGGGGTGTTCCTTTGGGCGACAAGTCTCTTCGTAGTGCATCACAGAT
CAACTTCTTGCCGCTGTGCTATTGGAGCCACGCTTTTCA

protein sequence of rna985

>rna985-protein ID=rna985-protein|Name=rna985|organism=Nannochloropsis gaditana|type=polypeptide|length=214bp
MVSKKASNVVKGKKKPAAKKVKKAAKTAPAAKKASLPTKKAPAAKKPVAA
TSSVPIKEASGSLPKEAGTNGKVSSIVVEACKQCQCFKKRAEILEQHLKV
LKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFSEA
QVALPSNFQPSAPYEILDMRRRRFVEGSSVLDPLPLGEVSRILLAQQQET
INYVASKSSKPKLV

mRNA from alignment at CM002456.1:902508..903963+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna985 ID=rna985|Name=rna985|organism=Nannochloropsis gaditana|type=mRNA|length=1456bp|location=Sequence derived from alignment at CM002456.1:902508..903963+ (Nannochloropsis gaditana)
ATGGTTTCAAAAAAGGCCAGCAACGTAGTCAAGGGCAAGAAAAAGCCAGC
TGCAAAGGTGAGCAGGCAGATGAGGGTTTGGAGAGGTCAAATGGGTTGAG
AACCAACGTGATACGAGGACTCAAAATGTGCGAGTCTTTTGACACATGCG
GCTGGCCAAAATGTTGTCTGTTTTTGGGTTTTATTGATTTGATTTCTTGG
AGGCCGAACAGTGTTTTTCAGGGCGAACGAGAAAGATGCTTTCAACACTT
ACGCTACTTTCTGAGTCATGTACACCTCATGCAGCTGGCGACATATTGCC
ACTTGCCTTCAAAATGTCCAAAGAAAAACAAGTCTATACTTGAGATCTTT
GGAAGTAACATATAATTTCTTGTGCACCCTCATCTTCGTGAATCAGAAGG
TTAAAAAAGCAGCGAAGACAGCTCCCGCAGCCAAGAAAGCTTCATTACCC
ACAAAGAAAGCACCTGCAGCTAAGAAACCTGTTGCGGCCACTTCGTCGGT
TCCTATCAAAGAGGCGTCAGGATCACTGCCAAAGGAGGCGGGTACCAACG
GAAAGGTTTCGTCCATAGTCGTGGAGGCTTGCAAGCAATGCCAGTGTAAG
CGCCTTCGATCAACGACCTTCTCGACTTGACCGCACGTTTCGTGAGTGTG
ACCAAGAGCTCTTTCACTTTCCTGCCTCGCATGTGGCACCCCAATAACCC
TGAGTAGGCTTCAAAAAAAGGGCTGAGATCCTGGAGCAGCACCTAAAGGT
CTTAAAGCCTGAGTTGAAGTTTGTTTTGAATCCCGAGAGGCCAACCAAGG
GTGTCTTCATTGTCCGCACGGACACGGGGGAAGTTCTGTGGTCTATGACA
GGACTGACACGCCCCTTCCAGCCATTGAAGGTACGCTAGTGTGTGTCAAG
CCTGTCTCTTGGCTAGGCAATTAGAGATCTCTGTAAGTTTAACCCGTCAG
TTGCCTCGGCTATCTTTCATTTATGAGTCCTTTCTGGCGATAGCCGTATA
ATTGGCGTGCTCGCGGGACTGCCTGTGCGGAAGGGCCTGAGGGCTGTCTT
TTGTCTgtatcctctctctccccttggAGCTGAAACACTGAATTCCGTTA
TCTCCAACCAGGCTGTGGACTTCTCTGAAGTTGCGAAAGAAATGGCCACT
AAGCTCTAGAGCTCTGGCTCGTGTATTTGGGCATTGGAGCATATTAAGGG
AAGGCGCAAGTGGCACTTCCCTCTAATTTTCAACCATCAGCTCCTTATGA
GATCGTGAGATGCTGAATCCATCAAGTTCGTTTCTGTTACAGTGAGGAAG
CTCTGATAGCTTGAcatgcgaaggaggaggtttgTTGAGGGCTCGTCGGT
GCTCGATCCTCTACCTCTAGGAGAAGTATCCCGGATCCTTTTGGCGCAAC
AGCAGGAAACAATAAATTATGTAGCCAGTAAGAGCTCAAAGCCAAAACTC
GTGTGA

Coding sequence (CDS) from alignment at CM002456.1:902508..903963+

>rna985 ID=rna985|Name=rna985|organism=Nannochloropsis gaditana|type=CDS|length=3870bp|location=Sequence derived from alignment at CM002456.1:902508..903963+ (Nannochloropsis gaditana)
ATGGTTTCAAAAAAGGCCAGCAACGTAGTCAAGGGCAAGAAAAAGCCAGC
TGCAAAGAAGGTTAAAAAAGCAGCGAAGACAGCTCCCGCAGCCAAGAAAG
CTTCATTACCCACAAAGAAAGCACCTGCAGCTAAGAAACCTGTTGCGGCC
ACTTCGTCGGTTCCTATCAAAGAGGCGTCAGGATCACTGCCAAAGGAGGC
GGGTACCAACGGAAAGGTTTCGTCCATAGTCGTGGAGGCTTGCAAGCAAT
GCCAGTGCTTCAAAAAAAGGGCTGAGATCCTGGAGCAGCACCTAAAGGTC
TTAAAGCCTGAGTTGAAGTTTGTTTTGAATCCCGAGAGGCCAACCAAGGG
TGTCTTCATTGTCCGCACGGACACGGGGGAAGTTCTGTGGTCTATGACAG
GACTGACACGCCCCTTCCAGCCATTGAAGGCTGTGGACTTCTCTGAAGCG
CAAGTGGCACTTCCCTCTAATTTTCAACCATCAGCTCCTTATGAGATCCT
TGAcatgcgaaggaggaggtttgTTGAGGGCTCGTCGGTGCTCGATCCTC
TACCTCTAGGAGAAGTATCCCGGATCCTTTTGGCGCAACAGCAGGAAACA
ATAAATTATGTAGCCAGTAAGAGCTCAAAGCCAAAACTCGTGTGAATGGT
TTCAAAAAAGGCCAGCAACGTAGTCAAGGGCAAGAAAAAGCCAGCTGCAA
AGAAGGTTAAAAAAGCAGCGAAGACAGCTCCCGCAGCCAAGAAAGCTTCA
TTACCCACAAAGAAAGCACCTGCAGCTAAGAAACCTGTTGCGGCCACTTC
GTCGGTTCCTATCAAAGAGGCGTCAGGATCACTGCCAAAGGAGGCGGGTA
CCAACGGAAAGGTTTCGTCCATAGTCGTGGAGGCTTGCAAGCAATGCCAG
TGCTTCAAAAAAAGGGCTGAGATCCTGGAGCAGCACCTAAAGGTCTTAAA
GCCTGAGTTGAAGTTTGTTTTGAATCCCGAGAGGCCAACCAAGGGTGTCT
TCATTGTCCGCACGGACACGGGGGAAGTTCTGTGGTCTATGACAGGACTG
ACACGCCCCTTCCAGCCATTGAAGGCTGTGGACTTCTCTGAAGCGCAAGT
GGCACTTCCCTCTAATTTTCAACCATCAGCTCCTTATGAGATCCTTGAca
tgcgaaggaggaggtttgTTGAGGGCTCGTCGGTGCTCGATCCTCTACCT
CTAGGAGAAGTATCCCGGATCCTTTTGGCGCAACAGCAGGAAACAATAAA
TTATGTAGCCAGTAAGAGCTCAAAGCCAAAACTCGTGTGAATGGTTTCAA
AAAAGGCCAGCAACGTAGTCAAGGGCAAGAAAAAGCCAGCTGCAAAGAAG
GTTAAAAAAGCAGCGAAGACAGCTCCCGCAGCCAAGAAAGCTTCATTACC
CACAAAGAAAGCACCTGCAGCTAAGAAACCTGTTGCGGCCACTTCGTCGG
TTCCTATCAAAGAGGCGTCAGGATCACTGCCAAAGGAGGCGGGTACCAAC
GGAAAGGTTTCGTCCATAGTCGTGGAGGCTTGCAAGCAATGCCAGTGCTT
CAAAAAAAGGGCTGAGATCCTGGAGCAGCACCTAAAGGTCTTAAAGCCTG
AGTTGAAGTTTGTTTTGAATCCCGAGAGGCCAACCAAGGGTGTCTTCATT
GTCCGCACGGACACGGGGGAAGTTCTGTGGTCTATGACAGGACTGACACG
CCCCTTCCAGCCATTGAAGGCTGTGGACTTCTCTGAAGCGCAAGTGGCAC
TTCCCTCTAATTTTCAACCATCAGCTCCTTATGAGATCCTTGAcatgcga
aggaggaggtttgTTGAGGGCTCGTCGGTGCTCGATCCTCTACCTCTAGG
AGAAGTATCCCGGATCCTTTTGGCGCAACAGCAGGAAACAATAAATTATG
TAGCCAGTAAGAGCTCAAAGCCAAAACTCGTGTGAATGGTTTCAAAAAAG
GCCAGCAACGTAGTCAAGGGCAAGAAAAAGCCAGCTGCAAAGAAGGTTAA
AAAAGCAGCGAAGACAGCTCCCGCAGCCAAGAAAGCTTCATTACCCACAA
AGAAAGCACCTGCAGCTAAGAAACCTGTTGCGGCCACTTCGTCGGTTCCT
ATCAAAGAGGCGTCAGGATCACTGCCAAAGGAGGCGGGTACCAACGGAAA
GGTTTCGTCCATAGTCGTGGAGGCTTGCAAGCAATGCCAGTGCTTCAAAA
AAAGGGCTGAGATCCTGGAGCAGCACCTAAAGGTCTTAAAGCCTGAGTTG
AAGTTTGTTTTGAATCCCGAGAGGCCAACCAAGGGTGTCTTCATTGTCCG
CACGGACACGGGGGAAGTTCTGTGGTCTATGACAGGACTGACACGCCCCT
TCCAGCCATTGAAGGCTGTGGACTTCTCTGAAGCGCAAGTGGCACTTCCC
TCTAATTTTCAACCATCAGCTCCTTATGAGATCCTTGAcatgcgaaggag
gaggtttgTTGAGGGCTCGTCGGTGCTCGATCCTCTACCTCTAGGAGAAG
TATCCCGGATCCTTTTGGCGCAACAGCAGGAAACAATAAATTATGTAGCC
AGTAAGAGCTCAAAGCCAAAACTCGTGTGAATGGTTTCAAAAAAGGCCAG
CAACGTAGTCAAGGGCAAGAAAAAGCCAGCTGCAAAGAAGGTTAAAAAAG
CAGCGAAGACAGCTCCCGCAGCCAAGAAAGCTTCATTACCCACAAAGAAA
GCACCTGCAGCTAAGAAACCTGTTGCGGCCACTTCGTCGGTTCCTATCAA
AGAGGCGTCAGGATCACTGCCAAAGGAGGCGGGTACCAACGGAAAGGTTT
CGTCCATAGTCGTGGAGGCTTGCAAGCAATGCCAGTGCTTCAAAAAAAGG
GCTGAGATCCTGGAGCAGCACCTAAAGGTCTTAAAGCCTGAGTTGAAGTT
TGTTTTGAATCCCGAGAGGCCAACCAAGGGTGTCTTCATTGTCCGCACGG
ACACGGGGGAAGTTCTGTGGTCTATGACAGGACTGACACGCCCCTTCCAG
CCATTGAAGGCTGTGGACTTCTCTGAAGCGCAAGTGGCACTTCCCTCTAA
TTTTCAACCATCAGCTCCTTATGAGATCCTTGAcatgcgaaggaggaggt
ttgTTGAGGGCTCGTCGGTGCTCGATCCTCTACCTCTAGGAGAAGTATCC
CGGATCCTTTTGGCGCAACAGCAGGAAACAATAAATTATGTAGCCAGTAA
GAGCTCAAAGCCAAAACTCGTGTGAATGGTTTCAAAAAAGGCCAGCAACG
TAGTCAAGGGCAAGAAAAAGCCAGCTGCAAAGAAGGTTAAAAAAGCAGCG
AAGACAGCTCCCGCAGCCAAGAAAGCTTCATTACCCACAAAGAAAGCACC
TGCAGCTAAGAAACCTGTTGCGGCCACTTCGTCGGTTCCTATCAAAGAGG
CGTCAGGATCACTGCCAAAGGAGGCGGGTACCAACGGAAAGGTTTCGTCC
ATAGTCGTGGAGGCTTGCAAGCAATGCCAGTGCTTCAAAAAAAGGGCTGA
GATCCTGGAGCAGCACCTAAAGGTCTTAAAGCCTGAGTTGAAGTTTGTTT
TGAATCCCGAGAGGCCAACCAAGGGTGTCTTCATTGTCCGCACGGACACG
GGGGAAGTTCTGTGGTCTATGACAGGACTGACACGCCCCTTCCAGCCATT
GAAGGCTGTGGACTTCTCTGAAGCGCAAGTGGCACTTCCCTCTAATTTTC
AACCATCAGCTCCTTATGAGATCCTTGAcatgcgaaggaggaggtttgTT
GAGGGCTCGTCGGTGCTCGATCCTCTACCTCTAGGAGAAGTATCCCGGAT
CCTTTTGGCGCAACAGCAGGAAACAATAAATTATGTAGCCAGTAAGAGCT
CAAAGCCAAAACTCGTGTGA

Synonyms

Publications