EWM29693.1, cds984 (CDS) Nannochloropsis gaditana

Overview
NameEWM29693.1
Unique Namecds984
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:902508..902564 +
Alignment locationCM002456.1:902904..903102 +
Alignment locationCM002456.1:903215..903387 +
Alignment locationCM002456.1:903619..903636 +
Alignment locationCM002456.1:903711..903761 +
Alignment locationCM002456.1:903817..903963 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29693.1
Productselenium binding protein
Orig transcript idgnl|cribi|Naga_100114g7.2478.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:902508..902564 +
CM002456.1supercontigCM002456.1:902904..903102 +
CM002456.1supercontigCM002456.1:903215..903387 +
CM002456.1supercontigCM002456.1:903619..903636 +
CM002456.1supercontigCM002456.1:903711..903761 +
CM002456.1supercontigCM002456.1:903817..903963 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|585112269|gb|EWM29693.1| (selenium binding protein [Nannochloropsis gaditana])

HSP 1 Score: 425.246 bits (1092), Expect = 1.779e-150
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query:    1 MVSKKASNVVKGKKKPAAKKVKKAAKTAPAAKKASLPTKKAPAAKKPVAATSSVPIKEASGSLPKEAGTNGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFSEAQVALPSNFQPSAPYEILDMRRRRFVEGSSVLDPLPLGEVSRILLAQQQETINYVASKSSKPKLV 214
            MVSKKASNVVKGKKKPAAKKVKKAAKTAPAAKKASLPTKKAPAAKKPVAATSSVPIKEASGSLPKEAGTNGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFSEAQVALPSNFQPSAPYEILDMRRRRFVEGSSVLDPLPLGEVSRILLAQQQETINYVASKSSKPKLV
Sbjct:    1 MVSKKASNVVKGKKKPAAKKVKKAAKTAPAAKKASLPTKKAPAAKKPVAATSSVPIKEASGSLPKEAGTNGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFSEAQVALPSNFQPSAPYEILDMRRRRFVEGSSVLDPLPLGEVSRILLAQQQETINYVASKSSKPKLV 214          
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|1150739096|ref|XP_020243674.1| (selenoprotein H-like, partial [Asparagus officinalis])

HSP 1 Score: 83.1889 bits (204), Expect = 5.356e-17
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 0
Query:   67 AGTNGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFSE 149
            A  +G    IV+EACKQC  FK RA I+++ L+   P +   +NPE+P +G F VR  +GE+  S+ GL RPF P+K +D  E
Sbjct:   29 AAGDGSSWGIVIEACKQCNSFKTRANIVKEGLESAIPGIDVTINPEKPRRGCFEVRKASGEIFISLLGLKRPFTPMKNLDMDE 111          
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|743787150|ref|XP_010922346.1| (PREDICTED: selenoprotein H [Elaeis guineensis])

HSP 1 Score: 78.5666 bits (192), Expect = 1.461e-14
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 0
Query:   75 SIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDF 147
            +I+VEACKQC  FK RA ++++ L+   P++   +NPE+P +G F +R ++GEV  S+  + RPF P+K +D 
Sbjct:  100 TIIVEACKQCNSFKTRANMVKEGLEKAVPDISVSVNPEKPRRGCFEIRKESGEVFVSLLNMPRPFTPMKKLDM 172          
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|901816195|gb|KMZ70492.1| (selenoprotein H-like Rdx protein [Zostera marina])

HSP 1 Score: 77.7962 bits (190), Expect = 3.223e-14
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 0
Query:   71 GKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFSE 149
            GKV+SI++EACKQCQ F + A  ++  L+  KPE++  +NPE+P +G F VR   GE+  S+  L RPF+ +K ++  +
Sbjct:  100 GKVNSIIIEACKQCQSFNRTALKVKDGLQKNKPEVEVTINPEKPRRGCFEVRDVNGEIFISLLELKRPFKKMKELNLDD 178          
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|1063497623|ref|XP_017983619.1| (PREDICTED: selenoprotein H [Theobroma cacao])

HSP 1 Score: 77.0258 bits (188), Expect = 3.538e-14
Identity = 52/157 (33.12%), Postives = 86/157 (54.78%), Query Frame = 0
Query:    4 KKASNVVKGKKKPAA----KKVKKAAKTAPAAKKASL--PTKKAPAAKKPVAATS-----SVPIKEAS--GSLPKEAGTNGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDF 147
            +K ++  +G+ KP      K+V ++    P A+ + L  P K+ P AK   +A       +V ++EA+       E G++ K  ++VVE CKQC  FK RA  ++  L+   P +K +LNPE+P +G F +R + GE   S+  + RPF+P+K +D 
Sbjct:    6 RKVTDGNEGEAKPLGQETLKRVTRSMTKQPGAESSELAQPNKEKPKAKANASAKEKKVKVAVAVEEAAPEDLTVSEDGSHNK--TVVVEHCKQCNSFKTRAVQVKDGLEKGVPGIKVLLNPEKPRRGCFEIREEGGEKFISLLDMKRPFKPMKDLDM 160          
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|672165678|ref|XP_008802752.1| (PREDICTED: uncharacterized protein LOC103716503 [Phoenix dactylifera])

HSP 1 Score: 77.0258 bits (188), Expect = 4.373e-14
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 0
Query:   70 NGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDF 147
             G   +I+VEACKQC  FK RA ++++ L+   P +   +NPE+P +G F +R ++GEV  S+  + RPF P+K +D 
Sbjct:   95 GGSSKTIIVEACKQCTSFKTRANMVKEGLEKAVPGISVSVNPEKPRRGCFEIRKESGEVFVSLLNMPRPFTPMKKLDM 172          
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|1028965780|ref|XP_016726397.1| (PREDICTED: selenoprotein H-like [Gossypium hirsutum])

HSP 1 Score: 76.2554 bits (186), Expect = 6.087e-14
Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 0
Query:   35 SLPTKKAPAAKKPVAATSSVPIKEASGSLPKE-----AGTNGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFS 148
            SLPTK+ P AK      S+      + + P+E      G++ K  ++VVE CKQC  FK RA  +   L+   P +K +LNPE+P +G F +R + GE   S+  + RPF+P+K +D  
Sbjct:   43 SLPTKEKPKAKAKRQKKSANEDGAKAEAAPEELAVADGGSHNK--TVVVEHCKQCNSFKTRAFQVRDGLEKGVPWVKVLLNPEKPRRGCFEIREEGGETFISLLDMKRPFKPMKELDME 159          
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|568860162|ref|XP_006483595.1| (PREDICTED: selenoprotein H [Citrus sinensis] >gi|641848363|gb|KDO67240.1| hypothetical protein CISIN_1g028564mg [Citrus sinensis])

HSP 1 Score: 76.2554 bits (186), Expect = 1.304e-13
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0
Query:   68 GTNGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFSE 149
            G   K  ++V+E CKQC  FK RA  ++  L+   P +  +LNPE+P +G F +R D GE   S+  + RPF+P+K +D  E
Sbjct:  116 GDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDE 197          
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|1035938728|gb|OAY65970.1| (hypothetical protein ACMD2_12407 [Ananas comosus])

HSP 1 Score: 75.485 bits (184), Expect = 1.365e-13
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 0
Query:   64 PKEAGTNGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFSEAQVAL 154
            P  +G      +I+VEACKQC  FK RA  ++  L+   P +   +NPE+P +G F +R D GEV  S+  + RPF+ +K +D  E  V +
Sbjct:   82 PISSGDGDASKTIIVEACKQCNSFKTRAIKVKDGLESAVPGVTVTINPEKPRRGCFEIREDGGEVFVSLLDMPRPFKLMKNLDMDEVIVDI 172          
BLAST of EWM29693.1 vs. NCBI_GenBank
Match: gi|567916258|ref|XP_006450135.1| (hypothetical protein CICLE_v10009502mg [Citrus clementina] >gi|557553361|gb|ESR63375.1| hypothetical protein CICLE_v10009502mg [Citrus clementina])

HSP 1 Score: 76.2554 bits (186), Expect = 1.446e-13
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0
Query:   68 GTNGKVSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDFSE 149
            G   K  ++V+E CKQC  FK RA  ++  L+   P +  +LNPE+P +G F +R D GE   S+  + RPF+P+K +D  E
Sbjct:  116 GDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIRKDGGEKFISLLDMKRPFKPMKDLDMDE 197          
The following BLAST results are available for this feature:
BLAST of EWM29693.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112269|gb|EWM29693.1|1.779e-150100.00selenium binding protein [Nannochloropsis gaditana... [more]
gi|1150739096|ref|XP_020243674.1|5.356e-1744.58selenoprotein H-like, partial [Asparagus officinal... [more]
gi|743787150|ref|XP_010922346.1|1.461e-1442.47PREDICTED: selenoprotein H [Elaeis guineensis][more]
gi|901816195|gb|KMZ70492.1|3.223e-1443.04selenoprotein H-like Rdx protein [Zostera marina][more]
gi|1063497623|ref|XP_017983619.1|3.538e-1433.12PREDICTED: selenoprotein H [Theobroma cacao][more]
gi|672165678|ref|XP_008802752.1|4.373e-1441.03PREDICTED: uncharacterized protein LOC103716503 [P... [more]
gi|1028965780|ref|XP_016726397.1|6.087e-1436.97PREDICTED: selenoprotein H-like [Gossypium hirsutu... [more]
gi|568860162|ref|XP_006483595.1|1.304e-1340.24PREDICTED: selenoprotein H [Citrus sinensis] >gi|6... [more]
gi|1035938728|gb|OAY65970.1|1.365e-1338.46hypothetical protein ACMD2_12407 [Ananas comosus][more]
gi|567916258|ref|XP_006450135.1|1.446e-1340.24hypothetical protein CICLE_v10009502mg [Citrus cle... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna985rna985Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications