rna9840, rna9840 (mRNA) Nannochloropsis gaditana

Overview
Namerna9840
Unique Namerna9840
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length998
Alignment locationKK037256.1:231072..232611 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100164g1.9735.mrna
Orig protein idgnl|cribi|Naga_100164g1.9735
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:231072..232611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100164g1gene9553Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9840rna9840-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20855.1cds9809Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9840 ID=rna9840|Name=rna9840|organism=Nannochloropsis gaditana|type=mRNA|length=998bp
ATGGGGTGGACTCTGGGGGGACGAGGCCGGCGGCGCGTCCGCAGCAAGCA
CGGGGAGGAAGAGGGAGGGAGGGAAGGCGGGAGGGAGGACGGGACCCTGT
TCTCTCTCCTTTTGGAGGACCCTTCCCTCCCGGGTCTGCCTCTGACGGAA
GTGGCTGTGAATCGACCGTACGCCTTGTATTTACGGGGCATGTCTCCTTC
AGGGGTGGTGAGGCTTCAGCTTCTCCTGCGCGGAAGGGACCAGGAAGGGG
AGCAGATCGGGAGACAGGGCGAGGTGCGAAGGCTGGGGTCGGTCAAGATG
GATGGATGGGGGAACGGTAGGGAAGACGGGGAGGAGATAATCTTCATCAG
GGAGGGAGAACAACCCCGAGAAAAAATAGAGGGAAACAATGGCAGGATCG
TGGTGGTCTTGCCGGACTTCGGCGAGGCGTTTGCCCTCCAAGCTGTGGAT
ACGGTCACGGGTACAGTAGGATTTTCGCCCTTGCTCATGGCAACGTCGGG
AGGAACCCGGCGCTCGTATGGGACCATGGAGTTTTGAATGGGTGTCCTGC
CCGGACGTCTGGGCTCACGAATGACGCGGGCACCTATTCCCTCTGCAAGG
ACGGAGGCTGGAGCGATGCGATGGAAGGGCCACCTGGAAAGGAAGGAACA
TGGGCGAAGCAGAGAGACCGCGCCGGCCGTGCCTTGGCAAGACTGTGGGA
GGGGCAGGGCAAGGCTGGGTTTGTCAAAGGCGTGTTGCGAGGGTCCACAT
TTGGCTTCACGCCGACGCCCTCGCTCTCTGTGTCCGTGGGCCCGATACGC
GAGAAAAAGCCCCGCCACAGGCGTGAAAGCGGAAGCTTCGCCTTTGTCGC
AGGGAGGACGCGTTTTCTGGCTTTGCTTCCCCGATAGGATCCCGATAGGA
GCGCGGGCAACACCGTACGCGACAGCATTGGGTGTCAGATGATGTCCCTC
GTTTCAACGTTAATCTTTGCAAATTATGACGCTTGACACTGAGTGCCA
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protein sequence of rna9840

>rna9840-protein ID=rna9840-protein|Name=rna9840|organism=Nannochloropsis gaditana|type=polypeptide|length=208bp
MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPV
VDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGT
GALVVGYSPLAEAIAIVPPHKDYWVQGTCEPYEAAWAPGPPFFVTGGGKN
CDVYEEPPEEKQKNWRQSGRDEARVMLNALFREQEDSQRRRRLNYRQSPL
LWNIRSSF
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mRNA from alignment at KK037256.1:231072..232611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9840 ID=rna9840|Name=rna9840|organism=Nannochloropsis gaditana|type=mRNA|length=1540bp|location=Sequence derived from alignment at KK037256.1:231072..232611- (Nannochloropsis gaditana)
ATGGCAGGGGGTTACACTTTTGTCGGGGGAGGAACGCACATATGTATTGG
CTCTCCCTCGGTCGCTGCCCAGTCGACCGCCCAAGAAGCCGGCATTGTAA
GTGTGTTTCTCCATAGACCGCCTTGGTCCTCTCTGGCGAAATCATTTCGT
TGCCAGGCTTGAGGACGCCCAGCATCCGATAGACGGCCGTGTGCGCAGGA
AGGCACTCAGGATGGGTTGGCGTAGCCTCGCCCCATTTTTTTCGTCCCTT
TCACCCCTTTCTCTTCTTGATCCTACCCGAATTATTCTGTCTCCGCCCCC
ACCCGTGCAGGGAGGGACGTTCTATTTGGCAGCGGGCTATGTCACTGCCA
TCGGGAGTCCGGTCGTTGATTTTGTTGGCATTGCCCTTAGCACGTTGGCG
GGGGAATTTGTGGCAGTAGGGGGTACGTCGATTAATGCGGGGTCAAAATT
TCTGCCTTTTCCCTTTCCCCCTCGAACATCGCTTTCGCTTGCCAGGCTCT
TAAAACGCTCGTTACTTCAACGAAGCAGGGTCAATTAAGTATGTCCCAGT
CTTTTAACTGGAGACTTGCCCCGTTATTCATAAAGAGTGACGCATTTCTA
TTTTTTTCCCTTTCTTTCTTCCCTTCTCCCCCCCCTCTTTTCAAAGCTGG
CTTCCTAGTCTGGATTGGAGGTCCCTTTGTGGAGTACAGTGCCATCGAGG
TCTTCAAAGGCTACGGCGGGACTCTCTTTGTAGGGACGGGAGCCTTGGTC
GTCGGCTACTCCCCCTTGGCGGAAGCGATTGCCATCGTTCCCCCCCACAA
AGATTATTGGGTGCAGGGGACTTGCGAGCCCTACGAGGCGGCCTGGGCTC
CGGGTCCGCCCTTTTTCGTGACGGGAGGGGGAAAAAATTGCGACGTGTAC
GAAGAGCCGCCCGAGGAGAAGCAGAAAAATTGGCGACAAAGCGGGAGGGA
CGAGGCCCGGGTCATGTTGAATGCCCTTTTCCGCGAGCAGGAAGACAGTC
AGGTACGGGGAGGAAGACGTTCTTTGGCATTGGGTGGAGGCAACCGCACA
TATTCTGACATGGAGAGGGAGATCAGTCTCTGGGTACGAGAATCATCCAC
ACGGGAGATTGACGTGTCGGACCCAAGCGTGAGGGAGGAGATGCAGAACC
GGTTTCAGGTCCCCTTGGCCCTTTCGATAGCCGCCGCGAGCCTGTTGGAG
GCGATGGGAGGTAAAGGTGGGGCAGGAAAAGGGCGGAAAAGGCCAAAAAA
AGAGACGTCCATGTACATCGGGGGACCATTGGAGGGAGAATGCCGGATCT
GTGGGGTGGAGCAAGTAGAAGGTCCGGGGGCGGAAGCATGTGAGGTGACA
GAGGCCTGTTCCCGGGGAGGAAGGGAGGAAAAAGAAGGGGAGGAAGAAAA
GGGCGGACGTCGAAAAATCAGGGAGACAGAGGAGGAGGAGGACGCATGGT
TTTCGAGTCTATTCCCCTCGAAAGCAGCGGCGGAGGCGACTCAACTACCG
CCAATCCCCTCTTTTGTGGAATATACGGAGCAGTTTTTGA
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Coding sequence (CDS) from alignment at KK037256.1:231072..232611-

>rna9840 ID=rna9840|Name=rna9840|organism=Nannochloropsis gaditana|type=CDS|length=2508bp|location=Sequence derived from alignment at KK037256.1:231072..232611- (Nannochloropsis gaditana)
CGGCGGAGGCGACTCAACTACCGCCAATCCCCTCTTTTGTGGAATATACG
GAGCAGTTTTTGACTGGCTTCCTAGTCTGGATTGGAGGTCCCTTTGTGGA
GTACAGTGCCATCGAGGTCTTCAAAGGCTACGGCGGGACTCTCTTTGTAG
GGACGGGAGCCTTGGTCGTCGGCTACTCCCCCTTGGCGGAAGCGATTGCC
ATCGTTCCCCCCCACAAAGATTATTGGGTGCAGGGGACTTGCGAGCCCTA
CGAGGCGGCCTGGGCTCCGGGTCCGCCCTTTTTCGTGACGGGAGGGGGAA
AAAATTGCGACGTGTACGAAGAGCCGCCCGAGGAGAAGCAGAAAAATTGG
CGACAAAGCGGGAGGGACGAGGCCCGGGTCATGTTGAATGCCCTTTTCCG
CGAGCAGGAAGACAGTCAGGGAGGGACGTTCTATTTGGCAGCGGGCTATG
TCACTGCCATCGGGAGTCCGGTCGTTGATTTTGTTGGCATTGCCCTTAGC
ACGTTGGCGGGGGAATTTGTGGCAGTAGGGGATGGCAGGGGGTTACACTT
TTGTCGGGGGAGGAACGCACATATGTATTGGCTCTCCCTCGGTCGCTGCC
CAGTCGACCGCCCAAGAAGCCGGCATTCGGCGGAGGCGACTCAACTACCG
CCAATCCCCTCTTTTGTGGAATATACGGAGCAGTTTTTGACTGGCTTCCT
AGTCTGGATTGGAGGTCCCTTTGTGGAGTACAGTGCCATCGAGGTCTTCA
AAGGCTACGGCGGGACTCTCTTTGTAGGGACGGGAGCCTTGGTCGTCGGC
TACTCCCCCTTGGCGGAAGCGATTGCCATCGTTCCCCCCCACAAAGATTA
TTGGGTGCAGGGGACTTGCGAGCCCTACGAGGCGGCCTGGGCTCCGGGTC
CGCCCTTTTTCGTGACGGGAGGGGGAAAAAATTGCGACGTGTACGAAGAG
CCGCCCGAGGAGAAGCAGAAAAATTGGCGACAAAGCGGGAGGGACGAGGC
CCGGGTCATGTTGAATGCCCTTTTCCGCGAGCAGGAAGACAGTCAGGGAG
GGACGTTCTATTTGGCAGCGGGCTATGTCACTGCCATCGGGAGTCCGGTC
GTTGATTTTGTTGGCATTGCCCTTAGCACGTTGGCGGGGGAATTTGTGGC
AGTAGGGGATGGCAGGGGGTTACACTTTTGTCGGGGGAGGAACGCACATA
TGTATTGGCTCTCCCTCGGTCGCTGCCCAGTCGACCGCCCAAGAAGCCGG
CATTCGGCGGAGGCGACTCAACTACCGCCAATCCCCTCTTTTGTGGAATA
TACGGAGCAGTTTTTGACTGGCTTCCTAGTCTGGATTGGAGGTCCCTTTG
TGGAGTACAGTGCCATCGAGGTCTTCAAAGGCTACGGCGGGACTCTCTTT
GTAGGGACGGGAGCCTTGGTCGTCGGCTACTCCCCCTTGGCGGAAGCGAT
TGCCATCGTTCCCCCCCACAAAGATTATTGGGTGCAGGGGACTTGCGAGC
CCTACGAGGCGGCCTGGGCTCCGGGTCCGCCCTTTTTCGTGACGGGAGGG
GGAAAAAATTGCGACGTGTACGAAGAGCCGCCCGAGGAGAAGCAGAAAAA
TTGGCGACAAAGCGGGAGGGACGAGGCCCGGGTCATGTTGAATGCCCTTT
TCCGCGAGCAGGAAGACAGTCAGGGAGGGACGTTCTATTTGGCAGCGGGC
TATGTCACTGCCATCGGGAGTCCGGTCGTTGATTTTGTTGGCATTGCCCT
TAGCACGTTGGCGGGGGAATTTGTGGCAGTAGGGGATGGCAGGGGGTTAC
ACTTTTGTCGGGGGAGGAACGCACATATGTATTGGCTCTCCCTCGGTCGC
TGCCCAGTCGACCGCCCAAGAAGCCGGCATTCGGCGGAGGCGACTCAACT
ACCGCCAATCCCCTCTTTTGTGGAATATACGGAGCAGTTTTTGACTGGCT
TCCTAGTCTGGATTGGAGGTCCCTTTGTGGAGTACAGTGCCATCGAGGTC
TTCAAAGGCTACGGCGGGACTCTCTTTGTAGGGACGGGAGCCTTGGTCGT
CGGCTACTCCCCCTTGGCGGAAGCGATTGCCATCGTTCCCCCCCACAAAG
ATTATTGGGTGCAGGGGACTTGCGAGCCCTACGAGGCGGCCTGGGCTCCG
GGTCCGCCCTTTTTCGTGACGGGAGGGGGAAAAAATTGCGACGTGTACGA
AGAGCCGCCCGAGGAGAAGCAGAAAAATTGGCGACAAAGCGGGAGGGACG
AGGCCCGGGTCATGTTGAATGCCCTTTTCCGCGAGCAGGAAGACAGTCAG
GGAGGGACGTTCTATTTGGCAGCGGGCTATGTCACTGCCATCGGGAGTCC
GGTCGTTGATTTTGTTGGCATTGCCCTTAGCACGTTGGCGGGGGAATTTG
TGGCAGTAGGGGATGGCAGGGGGTTACACTTTTGTCGGGGGAGGAACGCA
CATATGTATTGGCTCTCCCTCGGTCGCTGCCCAGTCGACCGCCCAAGAAG
CCGGCATT
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Synonyms
Publications