EWM20855.1, cds9809 (CDS) Nannochloropsis gaditana

Overview
NameEWM20855.1
Unique Namecds9809
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:232516..232611 -
Alignment locationKK037256.1:232190..232301 -
Alignment locationKK037256.1:231610..231965 -
Alignment locationKK037256.1:231072..231134 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20855.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100164g1.9735.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:232516..232611 -
KK037256.1supercontigKK037256.1:232190..232301 -
KK037256.1supercontigKK037256.1:231610..231965 -
KK037256.1supercontigKK037256.1:231072..231134 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20855.1 vs. NCBI_GenBank
Match: gi|585100795|gb|EWM20855.1| (hypothetical protein Naga_100164g1 [Nannochloropsis gaditana])

HSP 1 Score: 422.55 bits (1085), Expect = 1.227e-149
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
Query:    1 MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPLAEAIAIVPPHKDYWVQGTCEPYEAAWAPGPPFFVTGGGKNCDVYEEPPEEKQKNWRQSGRDEARVMLNALFREQEDSQRRRRLNYRQSPLLWNIRSSF 208
            MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPLAEAIAIVPPHKDYWVQGTCEPYEAAWAPGPPFFVTGGGKNCDVYEEPPEEKQKNWRQSGRDEARVMLNALFREQEDSQRRRRLNYRQSPLLWNIRSSF
Sbjct:    1 MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPLAEAIAIVPPHKDYWVQGTCEPYEAAWAPGPPFFVTGGGKNCDVYEEPPEEKQKNWRQSGRDEARVMLNALFREQEDSQRRRRLNYRQSPLLWNIRSSF 208          
BLAST of EWM20855.1 vs. NCBI_GenBank
Match: gi|585102651|gb|EWM22206.1| (hypothetical protein Naga_100291g4 [Nannochloropsis gaditana])

HSP 1 Score: 134.806 bits (338), Expect = 7.302e-33
Identity = 73/147 (49.66%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    1 MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPLAEAIAIVPPHKDYWVQGTCEPYEAAWAPGPPFFVTGG 147
            +AG Y FVG GT    GSP     S   EAG G   Y+A G    IG+PV DF GI  +   GE+  V AG LV IG P VE + IE F+G GG ++VGTG  V+GYSP+ E +A+V  H D+W+ G+CEP   AWAPG  FF+ GG
Sbjct:  250 VAGDYFFVGAGTFSSHGSPVAQYMSIGGEAGSGCLGYVATGTAVLIGAPVNDFAGIWTTFGIGEYYGVSAGLLVMIGCPMVEITGIEYFQGLGGAVYVGTGGAVLGYSPILEFVALVNEHFDFWIAGSCEPEHGAWAPGKAFFIPGG 396          
BLAST of EWM20855.1 vs. NCBI_GenBank
Match: gi|585110107|gb|EWM27806.1| (hypothetical protein Naga_100149g10 [Nannochloropsis gaditana])

HSP 1 Score: 105.145 bits (261), Expect = 1.218e-22
Identity = 64/143 (44.76%), Postives = 81/143 (56.64%), Query Frame = 0
Query:    1 MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPLAEAIAIVPPHKDYWVQGTCEPYEAAWAPGPPFF 143
            + GG+ F G G +I   SP V+      EAG GG  Y   G  +   S V  F G   + + G  ++V AGFLVWI  P V  S +E F G GGT+FVG GA V+G SPL E + I+  H DYW+ G+CEP+  AWA GP  F
Sbjct:  176 LLGGFAFNGAGVYIGHFSPFVSMIGCGVEAGAGGYAY-NVGIASFHWSSVTTFAGTWSAFMYGGMMSVPAGFLVWIYCPTVAVSGVESFWGRGGTVFVGAGAAVMGRSPLIEIMRIINLHADYWIMGSCEPFVEAWAGGPIKF 317          
BLAST of EWM20855.1 vs. NCBI_GenBank
Match: gi|585104563|gb|EWM23493.1| (hypothetical protein Naga_100198g12 [Nannochloropsis gaditana])

HSP 1 Score: 94.7449 bits (234), Expect = 5.806e-19
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 0
Query:    3 GGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPLAEAIA-IVPPHKDYWVQGTCE 130
            G   F+G G  I  GSP++   + A E G GG  ++ AGY +  G  V++F+ IA   + GE++AV AGFL WI  PF+E +AIE     G  +++G GA+V+  +P+ E     V    ++W+ GTCE
Sbjct:  489 GEVNFIGSGVMIATGSPAMEYIAQASENGQGGNTFIGAGYASFTGCVVLEFISIANIFMLGEYIAVDAGFLTWIASPFIEAAAIEYAFQLGSIVYIGAGAMVLWATPVVEVYGPRVSRSVEFWIMGTCE 617          
BLAST of EWM20855.1 vs. NCBI_GenBank
Match: gi|553185366|ref|XP_005854242.1| (hypothetical protein NGA_0025320 [Nannochloropsis gaditana CCMP526] >gi|422294822|gb|EKU22122.1| hypothetical protein NGA_0025320 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 89.7373 bits (221), Expect = 3.134e-17
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 0
Query:    3 GGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPLAEAIA-IVPPHKDYWVQGTC 129
            G   F+G G  I  GSP++   + A E G GG  ++ AGY +  G  V++F+ IA   + GE++AV AGFL WI  PF+E +AIE     G  +++G GA+V+  +P+ E     V    ++W+  TC
Sbjct:  374 GEVNFIGSGVMIATGSPAMEYIAQASENGQGGNTFIGAGYASFTGCVVLEFISIANIFMLGEYIAVDAGFLTWIASPFIEAAAIEYAFQLGSIVYIGAGAMVLWATPVVEVYGPRVSRSVEFWIMRTC 501          
BLAST of EWM20855.1 vs. NCBI_GenBank
Match: gi|553178295|ref|XP_005852539.1| (hypothetical protein NGA_0727200 [Nannochloropsis gaditana CCMP526] >gi|422295994|gb|EKU23293.1| hypothetical protein NGA_0727200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 70.8626 bits (172), Expect = 9.317e-11
Identity = 44/94 (46.81%), Postives = 52/94 (55.32%), Query Frame = 0
Query:    1 MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGG 94
            +AG Y FVG GT    GSP     S   EAG G   Y+A G    IG+PV DF GI  +   GE+  V AG LV IG P +E + IE F+G GG
Sbjct:  527 VAGDYFFVGAGTFSSHGSPVAQYMSIGGEAGSGCLGYVATGTAVLIGAPVNDFAGIWTTFGIGEYYGVSAGLLVMIGCPMLEITGIEFFQGLGG 620          
BLAST of EWM20855.1 vs. NCBI_GenBank
Match: gi|585108063|gb|EWM26075.1| (hypothetical protein Naga_100278g5 [Nannochloropsis gaditana])

HSP 1 Score: 65.4698 bits (158), Expect = 7.481e-9
Identity = 57/204 (27.94%), Postives = 86/204 (42.16%), Query Frame = 0
Query:    1 MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPLAEAIAIVPPHKDYWVQGTCEPYEAA-----------WAPGPPFFVTGGGKNCDVYEEPPEEKQKNWRQS--GRDEARVMLNALFREQEDSQRRR 191
            +AG   FVG G  I +G PS+ A ST   +GIGG  Y  AG    +GSP V++         G  +A  AGF  ++G P     A+  F G GGTL+ G+G  VV  SP      +  P    +V G  + +  A           +A    F  T      +   +    KQ+  R+   G  + +   N   + +   ++R+
Sbjct:  354 LAGSSIFVGSGASINVGVPSLFAYSTNTFSGIGGFSYNGAGVSVWVGSPSVNWASTYSFFGLGGTLADSAGFTTFVGSPTFSAYALFYFAGQGGTLWKGSGGAVVALSP------VYAPASRQYVSGNADNFYVAGRSFNDAKGLTYASRSKFASTNSKNKTNGMRKMTRHKQRRVRKDIVGGSKGKHEENEEIKHESTFEKRK 551          
BLAST of EWM20855.1 vs. NCBI_GenBank
Match: gi|553186171|ref|XP_005854372.1| (hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526] >gi|422294687|gb|EKU21987.1| hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 64.6994 bits (156), Expect = 1.158e-8
Identity = 44/110 (40.00%), Postives = 58/110 (52.73%), Query Frame = 0
Query:    1 MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPL 110
            +AG   FVG G  I +G PS+ A ST   +GIGG  Y  AG    +GSP V++         G  +A  AGF  ++G P     A+  F G GGTL+ G+G  VV  SP+
Sbjct:  489 LAGSSIFVGSGASINVGVPSLFAYSTNTFSGIGGFSYNGAGVSVWVGSPSVNWASTYSFFGLGGTLADSAGFTTFVGSPTFSAYALFYFAGQGGTLWKGSGGAVVALSPV 598          
BLAST of EWM20855.1 vs. NCBI_GenBank
Match: gi|585108528|gb|EWM26475.1| (hypothetical protein Naga_100045g21 [Nannochloropsis gaditana])

HSP 1 Score: 61.6178 bits (148), Expect = 1.255e-7
Identity = 39/117 (33.33%), Postives = 56/117 (47.86%), Query Frame = 0
Query:    1 MAGGYTFVGGGTHICIGSPSVAAQSTAQEAGIGGTFYLAAGYVTAIGSPVVDFVGIALSTLAGEFVAVGAGFLVWIGGPFVEYSAIEVFKGYGGTLFVGTGALVVGYSPLAEAIAIV 117
            M G   F+G G    +G P   + ST    G GG  Y  AG    +G PV  F  +      G   A GAG ++W+G P     A+  F G G  +FVG G+ V+  SP++  +A++
Sbjct:  538 MTGMMDFLGTGASSHVGVPCSMSGSTGAMHGQGGFSYNGAGSSVWVGCPVAMFWAVYSFLGTGGVAAQGAGIMIWVGNPVFMPMAVSYFAGLGAIMFVGAGSAVIALSPVSMPMAVM 654          
The following BLAST results are available for this feature:
BLAST of EWM20855.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585100795|gb|EWM20855.1|1.227e-149100.00hypothetical protein Naga_100164g1 [Nannochloropsi... [more]
gi|585102651|gb|EWM22206.1|7.302e-3349.66hypothetical protein Naga_100291g4 [Nannochloropsi... [more]
gi|585110107|gb|EWM27806.1|1.218e-2244.76hypothetical protein Naga_100149g10 [Nannochlorops... [more]
gi|585104563|gb|EWM23493.1|5.806e-1938.76hypothetical protein Naga_100198g12 [Nannochlorops... [more]
gi|553185366|ref|XP_005854242.1|3.134e-1737.50hypothetical protein NGA_0025320 [Nannochloropsis ... [more]
gi|553178295|ref|XP_005852539.1|9.317e-1146.81hypothetical protein NGA_0727200 [Nannochloropsis ... [more]
gi|585108063|gb|EWM26075.1|7.481e-927.94hypothetical protein Naga_100278g5 [Nannochloropsi... [more]
gi|553186171|ref|XP_005854372.1|1.158e-840.00hypothetical protein NGA_0163600, partial [Nannoch... [more]
gi|585108528|gb|EWM26475.1|1.255e-733.33hypothetical protein Naga_100045g21 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9840rna9840Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications