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Properties
| Property Name | Value |
|---|
| Product | pre-mrna-splicing factor clf1 |
| Orig transcript id | gnl|cribi|Naga_100894g1.5985.mrna |
| Orig protein id | gnl|cribi|Naga_100894g1.5985 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037256.1 | supercontig | KK037256.1:226663..227538 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9837 ID=rna9837|Name=rna9837|organism=Nannochloropsis gaditana|type=mRNA|length=1626bp
CGGAAAATATATGTACCAACAACGCGAACTTACCATTAACGTACGTCTAC
CACATACAATATCGCATGGAATAAAGAAGCTGACCAGTTTGCGGATCCCA
TCCCTCCCGGTATTGTCGTCGAGGCCTCTCCTTCTCGCCTTCTCTTCCTC
CTTCAACCTCCCCGTCTGGAGTTGCCCATGGCTCGCGCTCTCGCAGCTAT
CTCCAGGTCATCACCCTCCCCTCCCGTATCAGCAGTAGCGGTAGCTGCGA
GATCGGCGAAACGCAGACGGAGAAAGGGGGACATGCTATCCTATTTGCGT
GGACTGTCGTGGATGCACTTGGCCGGGATCGTCGGGTTGGCCTCTGTGAT
TTTGGGCGTCCGGCATTTCGTAAGGCAAGTGGATGTCGCTGAAGCCCTGA
TCCAGAACGCCGACGACGCTTACCAGCGTGGCAACGCGCTCTTCCAACGG
GGACAAAAAGAGAAAGCCAGGGCCGCGTACGAACGGGCCGTGCGCCTCTT
TCCCAAGCATGTCTACGCTTGGAGCAATCTCGGCACTGTCCGGCGAGAGC
TGGGGGACTTGCAGGGCTCCTTGGCGGCCCATCAAGAGGTTGAGAGGGAG
GGAGGGAGGGAAGGAAGGAAGGAGGGAGGGAGGGGACCAGGCGGTCTTTT
ATTCAATGGAAATACCTCCAAACGTATCTCACACTCTCACGATTTCATTC
TCCCGGGGGACCTGTGGTCGCGGGATCTTGTTTCCCCCCCTCTTTCTCTC
CTTCGCTCCCTCTTCCCTTCCCTCCCTCCTTCTTTCCCTCCCTCTTTCCC
TCAGGCCCTCGAACTCCTCCCCAGCCCTCGCTACCATTACAACGTGGCCG
TGTCCCACCAAAGCCTCGCAGACAATCCGGCGGCCATCGCCTCGTACCGC
ACCGCCATCTCCTTGAACCCCGACGGCCTCCCCGACGCCTACTTCAACCT
GGGCGTGGCCCTTCAAGAGGAAGGCGATTTGCAGGAAGCCAGCAGGGCCT
ACCTGCGGGCCTATGCCATCGATCCGTCCAACGCCGGGGCCATGGGCAAC
CACTGCAACATCCTCCAGAGCGTGGAGGGAAGGGAGGGCGGAGGGAGCGA
ACAGGCGGGGGAGGATGTAGGGGAGGGCGGGGAGGAGGCAGGGGTGGGGC
GGGTGGAAGGATGTTACCTGCGTTTGATCCGGGCCCACCCCGAGTACGAC
CGTGCCTATGTAAACCTGGGCGGGTACTATTACACGCAAGGGGAGATGGA
GAAATCCGCCGCTTGGTACATGAAGGCCTTGGAACACAACCCGAAGAACG
CGATCGCCGCGCACGCCCTCGGGGCCTTGGGGGGGGAGAAGTTGGAGGGG
GCGTCTCTGGCTTACTTGGCGGAGCTCTTCGACTCGTACTCGGCCACATT
CGACGCTTCCTTGCACGCTTTGGAGTATAAGAGCCCCGAGCTGCTCCGGC
GGGCCGTGGACGGACTCTTGCAAGGGGAGGGCGAGGCTGGAAAGGTAGGG
TGGGAAGGGGAGGAGGGACAAGGTAGGAGCCGACGGAGGGCGGTGGGGAC
GGGGGGAAGGGGAGGGGGGGGGTCTCTTGAGCGGAATGTGTGCGGCGAAC
AGAACGGGCGGTGCCCTGTGTGGTGA back to topprotein sequence of rna9837 >rna9837-protein ID=rna9837-protein|Name=rna9837|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREY
RVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDY
RNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSFKHL back to topmRNA from alignment at KK037256.1:226663..227538+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9837 ID=rna9837|Name=rna9837|organism=Nannochloropsis gaditana|type=mRNA|length=876bp|location=Sequence derived from alignment at KK037256.1:226663..227538+ (Nannochloropsis gaditana)
ATGAGTCGCAAGGTCTTGGTCAAGAATCGGGCGCCTGCGGCCATCCAAAT
CACTGCAGAACAAATATTACGCGAAGCCAATGACAGGGTTGTGCAGGAGG
ATAAAGCGCCTCGCGTGCATATCACAGACCCGGAAGAGTTGCGAGAGGTA
CGACGCCGGGAAGGATGTTTGAAGAAGTTATCACATGGAGAAGCATGATG
CCATCGAGACTCCGCATTCGGGCCCGTGCGGCGGGAGCCATGCCAATGTG
CTCTCGTAATTGGTGCcaattttcctcctcaatcCTTATCGCGttctccc
cgcttcctcttttttcacgCGTTGCCTTCCTTCTACCAGTACCGGGTCAT
GAAGCGGAAGGAATTCGAGGACCAAATACGTCGGCAACGCATGTTCTTGG
GCACATACATGAAATATGCAgcctgggaggagagccagcATGAATTCGAA
CGGGCTCGCTCTGTGTATGAGCGTTGCTTGGACGTTGACTACCGTACGTG
GTGATTGAGGGGGAGCCGCGCTCGCTTTGCTTTCCCCAACCAcctttcct
gtcctccttgcctctcacgtttccttccttccccctccctccctccctcc
cctaccttgcttcattcctccctccctccctccctccctccctccctccc
tccctcgcccgctttccccctccctgtcagGAAACACCACCACCTGGCTG
AAGTACGCAGAGATGGAGATGAAGCACAAATTCATCAACCATGCGCGGAA
CGTGTGGGACCGGGCGGTGACCCTCCATCCACGGGTCGATCAACTGTGGT
ACAAGTACTCGTACATGGAGGAAATGCTCGGAAACATCACCGCCGGTGCG
TATCTGGAAGATTTAAGCACTTATAA back to topCoding sequence (CDS) from alignment at KK037256.1:226663..227538+ >rna9837 ID=rna9837|Name=rna9837|organism=Nannochloropsis gaditana|type=CDS|length=1788bp|location=Sequence derived from alignment at KK037256.1:226663..227538+ (Nannochloropsis gaditana)
ATGAGTCGCAAGGTCTTGGTCAAGAATCGGGCGCCTGCGGCCATCCAAAT
CACTGCAGAACAAATATTACGCGAAGCCAATGACAGGGTTGTGCAGGAGG
ATAAAGCGCCTCGCGTGCATATCACAGACCCGGAAGAGTTGCGAGAGTAC
CGGGTCATGAAGCGGAAGGAATTCGAGGACCAAATACGTCGGCAACGCAT
GTTCTTGGGCACATACATGAAATATGCAgcctgggaggagagccagcATG
AATTCGAACGGGCTCGCTCTGTGTATGAGCGTTGCTTGGACGTTGACTAC
CGAAACACCACCACCTGGCTGAAGTACGCAGAGATGGAGATGAAGCACAA
ATTCATCAACCATGCGCGGAACGTGTGGGACCGGGCGGTGACCCTCCATC
CACGGGTCGATCAACTGTGGTACAAGTACTCATTTAAGCACTTATAAATG
AGTCGCAAGGTCTTGGTCAAGAATCGGGCGCCTGCGGCCATCCAAATCAC
TGCAGAACAAATATTACGCGAAGCCAATGACAGGGTTGTGCAGGAGGATA
AAGCGCCTCGCGTGCATATCACAGACCCGGAAGAGTTGCGAGAGTACCGG
GTCATGAAGCGGAAGGAATTCGAGGACCAAATACGTCGGCAACGCATGTT
CTTGGGCACATACATGAAATATGCAgcctgggaggagagccagcATGAAT
TCGAACGGGCTCGCTCTGTGTATGAGCGTTGCTTGGACGTTGACTACCGA
AACACCACCACCTGGCTGAAGTACGCAGAGATGGAGATGAAGCACAAATT
CATCAACCATGCGCGGAACGTGTGGGACCGGGCGGTGACCCTCCATCCAC
GGGTCGATCAACTGTGGTACAAGTACTCATTTAAGCACTTATAAATGAGT
CGCAAGGTCTTGGTCAAGAATCGGGCGCCTGCGGCCATCCAAATCACTGC
AGAACAAATATTACGCGAAGCCAATGACAGGGTTGTGCAGGAGGATAAAG
CGCCTCGCGTGCATATCACAGACCCGGAAGAGTTGCGAGAGTACCGGGTC
ATGAAGCGGAAGGAATTCGAGGACCAAATACGTCGGCAACGCATGTTCTT
GGGCACATACATGAAATATGCAgcctgggaggagagccagcATGAATTCG
AACGGGCTCGCTCTGTGTATGAGCGTTGCTTGGACGTTGACTACCGAAAC
ACCACCACCTGGCTGAAGTACGCAGAGATGGAGATGAAGCACAAATTCAT
CAACCATGCGCGGAACGTGTGGGACCGGGCGGTGACCCTCCATCCACGGG
TCGATCAACTGTGGTACAAGTACTCATTTAAGCACTTATAAATGAGTCGC
AAGGTCTTGGTCAAGAATCGGGCGCCTGCGGCCATCCAAATCACTGCAGA
ACAAATATTACGCGAAGCCAATGACAGGGTTGTGCAGGAGGATAAAGCGC
CTCGCGTGCATATCACAGACCCGGAAGAGTTGCGAGAGTACCGGGTCATG
AAGCGGAAGGAATTCGAGGACCAAATACGTCGGCAACGCATGTTCTTGGG
CACATACATGAAATATGCAgcctgggaggagagccagcATGAATTCGAAC
GGGCTCGCTCTGTGTATGAGCGTTGCTTGGACGTTGACTACCGAAACACC
ACCACCTGGCTGAAGTACGCAGAGATGGAGATGAAGCACAAATTCATCAA
CCATGCGCGGAACGTGTGGGACCGGGCGGTGACCCTCCATCCACGGGTCG
ATCAACTGTGGTACAAGTACTCATTTAAGCACTTATAA back to top
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