EWM20868.1, cds9806 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|585100810|gb|EWM20868.1| (pre-mrna-splicing factor clf1 [Nannochloropsis gaditana]) HSP 1 Score: 307.76 bits (787), Expect = 4.928e-106 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 Query: 1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSFKHL 148 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSFKHL Sbjct: 1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSFKHL 148
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|955383283|ref|XP_014626090.1| (PREDICTED: crooked neck-like protein 1 [Glycine max]) HSP 1 Score: 199.904 bits (507), Expect = 2.611e-62 Identity = 99/143 (69.23%), Postives = 115/143 (80.42%), Query Frame = 0 Query: 1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKY 143 + R VKN+ PA IQITAEQILREA +R E + P+ ITDP EL EYR+ KRKEFED IRR R +G ++KYA WEESQ +F+RARSV+ER L+VDY+N T WLKYAE+EMK+KFINHARNVWDRAVTL PRVDQLWYKY Sbjct: 23 LPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDPTELGEYRLRKRKEFEDLIRRVRWNIGVWIKYAQWEESQKDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKY 165
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|301110540|ref|XP_002904350.1| (pre-mRNA-splicing factor, Crooked neck-like protein [Phytophthora infestans T30-4] >gi|262096476|gb|EEY54528.1| pre-mRNA-splicing factor, Crooked neck-like protein [Phytophthora infestans T30-4]) HSP 1 Score: 211.075 bits (536), Expect = 5.527e-62 Identity = 103/145 (71.03%), Postives = 117/145 (80.69%), Query Frame = 0 Query: 1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145 M +K +VKNRAPA IQITAEQIL EAN R + + PR ITD EL EYR+ KRK FED++R QR +GT+MKYAAWEESQ EF RARSV+ER LDVDY+ TT WLKYAEMEM+HKF+NHARNVWDRAVTL PRV Q WYKY+F Sbjct: 1 MMKKSVVKNRAPAPIQITAEQILLEANQRKEEFAQPPRRRITDAAELAEYRMGKRKSFEDELRSQRHHVGTWMKYAAWEESQEEFGRARSVFERALDVDYKATTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQFWYKYAF 145
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|1173948362|gb|OQR96498.1| (pre-mRNA-splicing factor, Crooked neck [Thraustotheca clavata]) HSP 1 Score: 210.69 bits (535), Expect = 6.111e-62 Identity = 103/144 (71.53%), Postives = 116/144 (80.56%), Query Frame = 0 Query: 2 SRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145 +K VKNRAPA IQITAEQILREA DR K R ITD EEL EYR+ KRK FEDQIRRQR +G ++KYA WEE+QHEFERARS+YER LDVDY+N + WLKYAEMEMK+KFINHARNVWDRAV+L PR+ Q WYKY+F Sbjct: 4 GKKSAVKNRAPAPIQITAEQILREAQDRKEAAVKPSRRRITDIEELDEYRMSKRKTFEDQIRRQREHMGNWIKYAQWEEAQHEFERARSIYERALDVDYKNVSLWLKYAEMEMKNKFINHARNVWDRAVSLLPRIAQFWYKYAF 147
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|325179939|emb|CCA14341.1| (PREDICTED: crooked necklike 1 proteinlike putative [Albugo laibachii Nc14]) HSP 1 Score: 211.075 bits (536), Expect = 9.284e-62 Identity = 98/143 (68.53%), Postives = 120/143 (83.92%), Query Frame = 0 Query: 3 RKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145 ++ ++KNRAPA IQITAEQILREA DR +APR +I D +EL EYR+ +RK+FED +RRQR +GT++KYA WEE QHEFERARS++ER LDVDYRN++ WLKYAEMEM+++FINHARNVWDRAVTL PRV Q WYKY+F Sbjct: 2 KRSIIKNRAPAPIQITAEQILREAQDRKENVSRAPRRNIADKDELIEYRMTQRKQFEDTLRRQRQHIGTWIKYATWEEQQHEFERARSIFERALDVDYRNSSIWLKYAEMEMRNQFINHARNVWDRAVTLIPRVAQFWYKYAF 144
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|635364030|emb|CCI47499.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 211.075 bits (536), Expect = 9.821e-62 Identity = 98/143 (68.53%), Postives = 120/143 (83.92%), Query Frame = 0 Query: 3 RKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145 ++ ++KNRAPA IQITAEQILREA DR +APR +I D +EL EYR+ +RK+FED +RRQR +GT++KYA WEE QHEFERARS++ER LDVDYRN++ WLKYAEMEM+++FINHARNVWDRAVTL PRV Q WYKY+F Sbjct: 2 KRSIIKNRAPAPIQITAEQILREAQDRKENVSRAPRRNIADKDELIEYRMTQRKQFEDTLRRQRQHIGTWIKYANWEEQQHEFERARSIFERALDVDYRNSSIWLKYAEMEMRNQFINHARNVWDRAVTLLPRVAQFWYKYAF 144
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|953493059|emb|CEG45005.1| (pre-mrna-splicing crooked neck-like protein [Plasmopara halstedii]) HSP 1 Score: 209.534 bits (532), Expect = 2.291e-61 Identity = 100/145 (68.97%), Postives = 118/145 (81.38%), Query Frame = 0 Query: 1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145 M + +VKNRAPA IQITAEQIL EAN R + + PR ITD EL EYR+ KRK FED++RRQR +GT+MKYA+WEESQ EF RARS++ER +DVDY++ T WLKYAEMEM+HKF+NHARNVWDRAVTL PRV QLWYKY+F Sbjct: 1 MMKTSVVKNRAPAPIQITAEQILLEANQRKDETAQPPRRRITDAGELAEYRMGKRKSFEDELRRQRHHMGTWMKYASWEESQEEFPRARSIFERAIDVDYKSPTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQLWYKYAF 145
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|567985201|gb|ETL35548.1| (hypothetical protein L916_12322 [Phytophthora parasitica]) HSP 1 Score: 209.149 bits (531), Expect = 2.772e-61 Identity = 102/145 (70.34%), Postives = 116/145 (80.00%), Query Frame = 0 Query: 1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145 M +K +VKNRAPA IQITAEQIL EAN R + + PR ITD EL EYR+ KRK FED++RRQR +GT+MKYA WEESQ EF RARSV+ER LDVDY+ T WLKYAEMEM+HKF+NHARNVWDRAVTL PRV Q WYKY+F Sbjct: 1 MMKKSVVKNRAPAPIQITAEQILLEANQRKEELAQPPRRRITDAAELAEYRMGKRKAFEDELRRQRHHIGTWMKYATWEESQEEFARARSVFERALDVDYKAPTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQFWYKYAF 145
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|970658167|gb|KUF95965.1| (Stromal membrane-associated protein 2 [Phytophthora nicotianae]) HSP 1 Score: 209.149 bits (531), Expect = 2.802e-61 Identity = 102/145 (70.34%), Postives = 116/145 (80.00%), Query Frame = 0 Query: 1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145 M +K +VKNRAPA IQITAEQIL EAN R + + PR ITD EL EYR+ KRK FED++RRQR +GT+MKYA WEESQ EF RARSV+ER LDVDY+ T WLKYAEMEM+HKF+NHARNVWDRAVTL PRV Q WYKY+F Sbjct: 1 MMKKSVVKNRAPAPIQITAEQILLEANQRKEELAQPPRRRITDAAELAEYRMGKRKAFEDELRRQRHHIGTWMKYATWEESQEEFARARSVFERALDVDYKAPTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQFWYKYAF 145
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|675200323|ref|XP_008909046.1| (hypothetical protein PPTG_14241 [Phytophthora parasitica INRA-310] >gi|568044848|gb|ETM42026.1| hypothetical protein L914_12245 [Phytophthora parasitica] >gi|568090695|gb|ETN05524.1| hypothetical protein PPTG_14241 [Phytophthora parasitica INRA-310] >gi|970664785|gb|KUG01618.1| Crooked neck protein 1 [Phytophthora nicotianae]) HSP 1 Score: 209.149 bits (531), Expect = 2.830e-61 Identity = 102/145 (70.34%), Postives = 116/145 (80.00%), Query Frame = 0 Query: 1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145 M +K +VKNRAPA IQITAEQIL EAN R + + PR ITD EL EYR+ KRK FED++RRQR +GT+MKYA WEESQ EF RARSV+ER LDVDY+ T WLKYAEMEM+HKF+NHARNVWDRAVTL PRV Q WYKY+F Sbjct: 1 MMKKSVVKNRAPAPIQITAEQILLEANQRKEELAQPPRRRITDAAELAEYRMGKRKAFEDELRRQRHHIGTWMKYATWEESQEEFARARSVFERALDVDYKAPTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQFWYKYAF 145 The following BLAST results are available for this feature:
BLAST of EWM20868.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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