EWM20868.1, cds9806 (CDS) Nannochloropsis gaditana

Overview
NameEWM20868.1
Unique Namecds9806
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:226663..226809 +
Alignment locationKK037256.1:227002..227155 +
Alignment locationKK037256.1:227343..227472 +
Alignment locationKK037256.1:227523..227538 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20868.1
Productpre-mrna-splicing factor clf1
Orig transcript idgnl|cribi|Naga_100894g1.5985.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:226663..226809 +
KK037256.1supercontigKK037256.1:227002..227155 +
KK037256.1supercontigKK037256.1:227343..227472 +
KK037256.1supercontigKK037256.1:227523..227538 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR003107HAT
Homology
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|585100810|gb|EWM20868.1| (pre-mrna-splicing factor clf1 [Nannochloropsis gaditana])

HSP 1 Score: 307.76 bits (787), Expect = 4.928e-106
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
Query:    1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSFKHL 148
            MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSFKHL
Sbjct:    1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSFKHL 148          
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|955383283|ref|XP_014626090.1| (PREDICTED: crooked neck-like protein 1 [Glycine max])

HSP 1 Score: 199.904 bits (507), Expect = 2.611e-62
Identity = 99/143 (69.23%), Postives = 115/143 (80.42%), Query Frame = 0
Query:    1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKY 143
            + R   VKN+ PA IQITAEQILREA +R   E + P+  ITDP EL EYR+ KRKEFED IRR R  +G ++KYA WEESQ +F+RARSV+ER L+VDY+N T WLKYAE+EMK+KFINHARNVWDRAVTL PRVDQLWYKY
Sbjct:   23 LPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDPTELGEYRLRKRKEFEDLIRRVRWNIGVWIKYAQWEESQKDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKY 165          
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|301110540|ref|XP_002904350.1| (pre-mRNA-splicing factor, Crooked neck-like protein [Phytophthora infestans T30-4] >gi|262096476|gb|EEY54528.1| pre-mRNA-splicing factor, Crooked neck-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 211.075 bits (536), Expect = 5.527e-62
Identity = 103/145 (71.03%), Postives = 117/145 (80.69%), Query Frame = 0
Query:    1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145
            M +K +VKNRAPA IQITAEQIL EAN R  +  + PR  ITD  EL EYR+ KRK FED++R QR  +GT+MKYAAWEESQ EF RARSV+ER LDVDY+ TT WLKYAEMEM+HKF+NHARNVWDRAVTL PRV Q WYKY+F
Sbjct:    1 MMKKSVVKNRAPAPIQITAEQILLEANQRKEEFAQPPRRRITDAAELAEYRMGKRKSFEDELRSQRHHVGTWMKYAAWEESQEEFGRARSVFERALDVDYKATTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQFWYKYAF 145          
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|1173948362|gb|OQR96498.1| (pre-mRNA-splicing factor, Crooked neck [Thraustotheca clavata])

HSP 1 Score: 210.69 bits (535), Expect = 6.111e-62
Identity = 103/144 (71.53%), Postives = 116/144 (80.56%), Query Frame = 0
Query:    2 SRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145
             +K  VKNRAPA IQITAEQILREA DR     K  R  ITD EEL EYR+ KRK FEDQIRRQR  +G ++KYA WEE+QHEFERARS+YER LDVDY+N + WLKYAEMEMK+KFINHARNVWDRAV+L PR+ Q WYKY+F
Sbjct:    4 GKKSAVKNRAPAPIQITAEQILREAQDRKEAAVKPSRRRITDIEELDEYRMSKRKTFEDQIRRQREHMGNWIKYAQWEEAQHEFERARSIYERALDVDYKNVSLWLKYAEMEMKNKFINHARNVWDRAVSLLPRIAQFWYKYAF 147          
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|325179939|emb|CCA14341.1| (PREDICTED: crooked necklike 1 proteinlike putative [Albugo laibachii Nc14])

HSP 1 Score: 211.075 bits (536), Expect = 9.284e-62
Identity = 98/143 (68.53%), Postives = 120/143 (83.92%), Query Frame = 0
Query:    3 RKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145
            ++ ++KNRAPA IQITAEQILREA DR     +APR +I D +EL EYR+ +RK+FED +RRQR  +GT++KYA WEE QHEFERARS++ER LDVDYRN++ WLKYAEMEM+++FINHARNVWDRAVTL PRV Q WYKY+F
Sbjct:    2 KRSIIKNRAPAPIQITAEQILREAQDRKENVSRAPRRNIADKDELIEYRMTQRKQFEDTLRRQRQHIGTWIKYATWEEQQHEFERARSIFERALDVDYRNSSIWLKYAEMEMRNQFINHARNVWDRAVTLIPRVAQFWYKYAF 144          
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|635364030|emb|CCI47499.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 211.075 bits (536), Expect = 9.821e-62
Identity = 98/143 (68.53%), Postives = 120/143 (83.92%), Query Frame = 0
Query:    3 RKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145
            ++ ++KNRAPA IQITAEQILREA DR     +APR +I D +EL EYR+ +RK+FED +RRQR  +GT++KYA WEE QHEFERARS++ER LDVDYRN++ WLKYAEMEM+++FINHARNVWDRAVTL PRV Q WYKY+F
Sbjct:    2 KRSIIKNRAPAPIQITAEQILREAQDRKENVSRAPRRNIADKDELIEYRMTQRKQFEDTLRRQRQHIGTWIKYANWEEQQHEFERARSIFERALDVDYRNSSIWLKYAEMEMRNQFINHARNVWDRAVTLLPRVAQFWYKYAF 144          
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|953493059|emb|CEG45005.1| (pre-mrna-splicing crooked neck-like protein [Plasmopara halstedii])

HSP 1 Score: 209.534 bits (532), Expect = 2.291e-61
Identity = 100/145 (68.97%), Postives = 118/145 (81.38%), Query Frame = 0
Query:    1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145
            M +  +VKNRAPA IQITAEQIL EAN R  +  + PR  ITD  EL EYR+ KRK FED++RRQR  +GT+MKYA+WEESQ EF RARS++ER +DVDY++ T WLKYAEMEM+HKF+NHARNVWDRAVTL PRV QLWYKY+F
Sbjct:    1 MMKTSVVKNRAPAPIQITAEQILLEANQRKDETAQPPRRRITDAGELAEYRMGKRKSFEDELRRQRHHMGTWMKYASWEESQEEFPRARSIFERAIDVDYKSPTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQLWYKYAF 145          
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|567985201|gb|ETL35548.1| (hypothetical protein L916_12322 [Phytophthora parasitica])

HSP 1 Score: 209.149 bits (531), Expect = 2.772e-61
Identity = 102/145 (70.34%), Postives = 116/145 (80.00%), Query Frame = 0
Query:    1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145
            M +K +VKNRAPA IQITAEQIL EAN R  +  + PR  ITD  EL EYR+ KRK FED++RRQR  +GT+MKYA WEESQ EF RARSV+ER LDVDY+  T WLKYAEMEM+HKF+NHARNVWDRAVTL PRV Q WYKY+F
Sbjct:    1 MMKKSVVKNRAPAPIQITAEQILLEANQRKEELAQPPRRRITDAAELAEYRMGKRKAFEDELRRQRHHIGTWMKYATWEESQEEFARARSVFERALDVDYKAPTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQFWYKYAF 145          
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|970658167|gb|KUF95965.1| (Stromal membrane-associated protein 2 [Phytophthora nicotianae])

HSP 1 Score: 209.149 bits (531), Expect = 2.802e-61
Identity = 102/145 (70.34%), Postives = 116/145 (80.00%), Query Frame = 0
Query:    1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145
            M +K +VKNRAPA IQITAEQIL EAN R  +  + PR  ITD  EL EYR+ KRK FED++RRQR  +GT+MKYA WEESQ EF RARSV+ER LDVDY+  T WLKYAEMEM+HKF+NHARNVWDRAVTL PRV Q WYKY+F
Sbjct:    1 MMKKSVVKNRAPAPIQITAEQILLEANQRKEELAQPPRRRITDAAELAEYRMGKRKAFEDELRRQRHHIGTWMKYATWEESQEEFARARSVFERALDVDYKAPTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQFWYKYAF 145          
BLAST of EWM20868.1 vs. NCBI_GenBank
Match: gi|675200323|ref|XP_008909046.1| (hypothetical protein PPTG_14241 [Phytophthora parasitica INRA-310] >gi|568044848|gb|ETM42026.1| hypothetical protein L914_12245 [Phytophthora parasitica] >gi|568090695|gb|ETN05524.1| hypothetical protein PPTG_14241 [Phytophthora parasitica INRA-310] >gi|970664785|gb|KUG01618.1| Crooked neck protein 1 [Phytophthora nicotianae])

HSP 1 Score: 209.149 bits (531), Expect = 2.830e-61
Identity = 102/145 (70.34%), Postives = 116/145 (80.00%), Query Frame = 0
Query:    1 MSRKVLVKNRAPAAIQITAEQILREANDRVVQEDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTTTWLKYAEMEMKHKFINHARNVWDRAVTLHPRVDQLWYKYSF 145
            M +K +VKNRAPA IQITAEQIL EAN R  +  + PR  ITD  EL EYR+ KRK FED++RRQR  +GT+MKYA WEESQ EF RARSV+ER LDVDY+  T WLKYAEMEM+HKF+NHARNVWDRAVTL PRV Q WYKY+F
Sbjct:    1 MMKKSVVKNRAPAPIQITAEQILLEANQRKEELAQPPRRRITDAAELAEYRMGKRKAFEDELRRQRHHIGTWMKYATWEESQEEFARARSVFERALDVDYKAPTIWLKYAEMEMRHKFVNHARNVWDRAVTLLPRVAQFWYKYAF 145          
The following BLAST results are available for this feature:
BLAST of EWM20868.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100810|gb|EWM20868.1|4.928e-106100.00pre-mrna-splicing factor clf1 [Nannochloropsis gad... [more]
gi|955383283|ref|XP_014626090.1|2.611e-6269.23PREDICTED: crooked neck-like protein 1 [Glycine ma... [more]
gi|301110540|ref|XP_002904350.1|5.527e-6271.03pre-mRNA-splicing factor, Crooked neck-like protei... [more]
gi|1173948362|gb|OQR96498.1|6.111e-6271.53pre-mRNA-splicing factor, Crooked neck [Thraustoth... [more]
gi|325179939|emb|CCA14341.1|9.284e-6268.53PREDICTED: crooked necklike 1 proteinlike putative... [more]
gi|635364030|emb|CCI47499.1|9.821e-6268.53unnamed protein product [Albugo candida][more]
gi|953493059|emb|CEG45005.1|2.291e-6168.97pre-mrna-splicing crooked neck-like protein [Plasm... [more]
gi|567985201|gb|ETL35548.1|2.772e-6170.34hypothetical protein L916_12322 [Phytophthora para... [more]
gi|970658167|gb|KUF95965.1|2.802e-6170.34Stromal membrane-associated protein 2 [Phytophthor... [more]
gi|675200323|ref|XP_008909046.1|2.830e-6170.34hypothetical protein PPTG_14241 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9837rna9837Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications