rna9834, rna9834 (mRNA) Nannochloropsis gaditana

Overview
Namerna9834
Unique Namerna9834
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1062
Alignment locationKK037256.1:218834..219477 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100787g2.1583.mrna
Orig protein idgnl|cribi|Naga_100787g2.1583
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:218834..219477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100787g2gene9547Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9834rna9834-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20870.1cds9803Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9834 ID=rna9834|Name=rna9834|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp
CTCGCGCGTCTCCGTCCCTTCCAGTTTCTCCTCTCCATAACGTGAACTCT
CAAATGCTCCTTCCTGTCTTTCGCATCACATTAGCAGATGTCCTCTTCAG
CCCCGCCCGGCCCCACTTCCCTTGTTCCATCGCCCTTGTCCTTGTCATTC
ACCCCCGCGGGAGGAAGAAGCAGACGAAGCTGTGGACGGCGGTCCTTTTC
CATCTGCTCGTCCTCCCTCTCAAGAACCACAGCACCCGGGTTAGGAATAT
TACAAAGAAGAACGAGACGAGCCTGGTCCTCCATTTGTCTCAGATTGCTT
GCCAGGCACGCCCAAGACGGGCATCACCCTCTTCCTAGGCGCTTCTGTCC
CTGCTTCCCTCATCTGGCCTTTCCACTTCTCCTCCTCCTGTGCCTCCTGT
GTACACATCTTTCCACCTCCAAGCCCCACCAACATGCCTCCGCTTTCCTG
AATGCCCCTCTCCACAGCCAACACGTGACACGGCTCTCCACCCCAGCCCG
CCACGGCCCCATCATCTCTCCTCTCTCGGCTCCTGCCCGGCGTCATGCCC
CTCTCCGTCGATCCCGCCCCCTGCCTCCCCTTTTCTTCTCCCCCGCCCTC
CTCAACGTGGGGACTCCCGAGGCTGCCCTCATCCTCCTGGTGGGCTATTT
CGTGCTCGGTCCACAAGATCTGTACCGCGTGGCCAAGGAGGTCGGCCAGC
TTCTTTCGAACCTGCAGACGGCGGGCTCGGATGCCTGGAAGGTGTTCCAG
GAGGCGATGGAAGCGGAAGGAACCATGGCGGCCATGGGTGCGAGTGTGAA
CGAGATCAACAATGTTCGGCAGAATTTCTTCCAGAAATTTCTGGACGTGC
GGGCGGAACGGACGCTGGACCAACTCGAGGAGAAGGGGGTGGACGTTGAG
GCCTTGACGGGGGGGATGGGGGAGGAAGACGAATGGGGCAACCGTCTTAA
GGAGGTGCAGCGGCGGAAAGAGGAGGAGGCAGCGGCCAAGGTCTTGATGG
AGGCGGAGGATGAAGGAAGGAAGAGGAAGAGGAGGAGGAGGAAGGGGCGG
AGGGAGGGAAGG
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protein sequence of rna9834

>rna9834-protein ID=rna9834-protein|Name=rna9834|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MRHSIGPCAAWGQCTDKQGVRLTFFRRVAMRVLCVHWLRSACRMINEIYL
DMGAETKRCKGCQERMTQEIRVYMGSNNHNKGRGEQDGNAALAAIGTSIP
PHGGKIVVETGKLNIKYHSFSSISFASYHCNHCHEIMKKDVGIDVMLGPS
RLAQGIRHF
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mRNA from alignment at KK037256.1:218834..219477+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9834 ID=rna9834|Name=rna9834|organism=Nannochloropsis gaditana|type=mRNA|length=644bp|location=Sequence derived from alignment at KK037256.1:218834..219477+ (Nannochloropsis gaditana)
ATGCGGCACAGCATTGGACCTTGCGCCGCTTGGGGTCAATGCACGGACAA
ACAAGGTGTAAGACTTACTTTTTTTCGACGTGTTGCAATGCGTGTCCTGT
GTGTTCATTGGCTACGGAGTGCGTGCAGGATGATAAATGAGATATACCTT
GATATGGGGGCAGAGACAAAACGCTGTAAGGGGTGTCAGGAACGGATGAC
ACAAGAGATGTTTTGGCTCTGGATTGCACCAGCCTTTTCAAAATTTGAGT
TTTAGACTGTAGACGTGTATATATGGGTAGTAACAATCATAAcaaaggac
gaggggagcAGGATGGAAACGCAGCGCTTGCAGCCATTGGGACATCCATA
CCTCCGCATGGTGGTAAAATCGTGGTAGAAACAGGTAAGCTGAACATTAA
GTATCATAGCTTTTCCTCGATGTATGGTTGAGTACACTTAAATAGGTGGA
AGGTAGATTCAGaagtggaaggaaagaagtGGGACAGAAgttgtcgaggg
agggggccatTTGGTTTTTGATGCCGCGGAAGATCATTTGCTTCTTACCA
CTGCAATCATTGCCATGAAATTATGAAGAAAGACGTGGGCATCGATGTAA
TGCTTGGACCTTCACGCTTAGCGCAAGGGATTAGACACTTTTGA
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Coding sequence (CDS) from alignment at KK037256.1:218834..219477+

>rna9834 ID=rna9834|Name=rna9834|organism=Nannochloropsis gaditana|type=CDS|length=1440bp|location=Sequence derived from alignment at KK037256.1:218834..219477+ (Nannochloropsis gaditana)
ATGCGGCACAGCATTGGACCTTGCGCCGCTTGGGGTCAATGCACGGACAA
ACAAGGTGTAAGACTTACTTTTTTTCGACGTGTTGCAATGCGTGTCCTGT
GTGTTCATTGGCTACGGAGTGCGTGCAGGATGATAAATGAGATATACCTT
GATATGGGGGCAGAGACAAAACGCTGTAAGGGGTGTCAGGAACGGATGAC
ACAAGAGATACGTGTATATATGGGTAGTAACAATCATAAcaaaggacgag
gggagcAGGATGGAAACGCAGCGCTTGCAGCCATTGGGACATCCATACCT
CCGCATGGTGGTAAAATCGTGGTAGAAACAGGTAAGCTGAACATTAAGTA
TCATAGCTTTTCCTCGATATCATTTGCTTCTTACCACTGCAATCATTGCC
ATGAAATTATGAAGAAAGACGTGGGCATCGATGTAATGCTTGGACCTTCA
CGCTTAGCGCAAGGGATTAGACACTTTTGAATGCGGCACAGCATTGGACC
TTGCGCCGCTTGGGGTCAATGCACGGACAAACAAGGTGTAAGACTTACTT
TTTTTCGACGTGTTGCAATGCGTGTCCTGTGTGTTCATTGGCTACGGAGT
GCGTGCAGGATGATAAATGAGATATACCTTGATATGGGGGCAGAGACAAA
ACGCTGTAAGGGGTGTCAGGAACGGATGACACAAGAGATACGTGTATATA
TGGGTAGTAACAATCATAAcaaaggacgaggggagcAGGATGGAAACGCA
GCGCTTGCAGCCATTGGGACATCCATACCTCCGCATGGTGGTAAAATCGT
GGTAGAAACAGGTAAGCTGAACATTAAGTATCATAGCTTTTCCTCGATAT
CATTTGCTTCTTACCACTGCAATCATTGCCATGAAATTATGAAGAAAGAC
GTGGGCATCGATGTAATGCTTGGACCTTCACGCTTAGCGCAAGGGATTAG
ACACTTTTGAATGCGGCACAGCATTGGACCTTGCGCCGCTTGGGGTCAAT
GCACGGACAAACAAGGTGTAAGACTTACTTTTTTTCGACGTGTTGCAATG
CGTGTCCTGTGTGTTCATTGGCTACGGAGTGCGTGCAGGATGATAAATGA
GATATACCTTGATATGGGGGCAGAGACAAAACGCTGTAAGGGGTGTCAGG
AACGGATGACACAAGAGATACGTGTATATATGGGTAGTAACAATCATAAc
aaaggacgaggggagcAGGATGGAAACGCAGCGCTTGCAGCCATTGGGAC
ATCCATACCTCCGCATGGTGGTAAAATCGTGGTAGAAACAGGTAAGCTGA
ACATTAAGTATCATAGCTTTTCCTCGATATCATTTGCTTCTTACCACTGC
AATCATTGCCATGAAATTATGAAGAAAGACGTGGGCATCGATGTAATGCT
TGGACCTTCACGCTTAGCGCAAGGGATTAGACACTTTTGA
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Synonyms
Publications