rna9833, rna9833 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9833
Unique Name	rna9833
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	977
Alignment location	KK037256.1:217066..218583 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100787g1.1582.mrna
Orig protein id	gnl\|cribi\|Naga_100787g1.1582
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:217066..218583 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100787g1	gene9546	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9833	rna9833-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20869.1	cds9802	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:217066..218583-
coding sequence from alignment at KK037256.1:217066..218583-

mRNA sequence

>rna9833 ID=rna9833|Name=rna9833|organism=Nannochloropsis gaditana|type=mRNA|length=977bp
TTCCTCCTTCCCCCCTCCTCCCCCCCCTTCGCTCCCTCCTTCCCTCCCTC
GGCCCCTCCCTCTTTCCAGGGACAGAACGCCACCTCTCCCTTCGCCCCCC
CTCCCTTCTTTCCCCCCCTGCCTCCTCCTTACATGCCTCGCCCCCCCTTC
TACCCTCCTCCTCCCTTCGCTACCTCCACCTCTCCTCCCCCCTCCTCGGT
TGCGTTTGGTTCCCCGCAGCCCTTCGCCGCCCATGGACCAGGGACAGGCG
GAGGCGGGGAAGGGAGGGAAGGAGGGAGGGAAACAGGGGCTTCTCCCACG
CAGACGCTGGGGGAGGGAGCGGGGGTGGACAGTCGGACGGAGGGGAGGGT
ATTCTCCTCCACGGGACCCTCACCACCGCCCGGTCTCCTCTCTCCCTCCC
TCCCTCCCTACCCCGTCGTGCCCCCTCCTTACGCGCCGTACCCGTCCTAC
CCCCCGCCGGCGTCCTTCCCCTTCCACCCTCCCTCCCCACCCTCTTCCCC
TTCGCCTCGGCCGTCGAGCCGGAGCAGCCGAGGGAAGAGGGAGGGGAGGA
GGAAGGAGAGCCGTCGGTCGCACGCGACACATGCCCGCCCCGGCCCCTCT
CCCTCTTCCGTCCCCATCCCCCTCGACACGCAGGAGGAAGCGGCGGCAAA
GGAGAGGTTCACAGCCCAGTTGGATGCGGAGGCTTGGAACCAGAAAATCA
TGGCCGGCACAGCCAATGGAGGAAACCTCCCATTGGGGCCCGTGGTGATG
AAAAGGGAAGAGGAAGGAGGAGGCAGGGAAGGCGGAAGGGACAGAGATGA
GAAGAAGAGTCGATGGAGGGACGATAGTCGAAGCAAGCGGAAATAGAGGG
CCAGGGCTTGGGGCAAAGATAGTGTGTGCTGATAACCTTGGATGCGTCGC
AAGCTTGTCGAAGGGGTGAGTATCCAGAATGAGAAAGCGGCGAAAAAAGA
AAAGAACACTGGTTACCATCAAGAAGT

protein sequence of rna9833

>rna9833-protein ID=rna9833-protein|Name=rna9833|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MSSSAPPGPTSLVPSPLSLSFTPAGGRSRRSCGRRSFSICSSSLSRTTAP
GLGILQRRTRRAWSSICLRLLARHAQDGHHPLPRRFCPCFPHLAFPLLLL
LCLLCTHLSTSKPHQHASAFLNAPLHSQHVTRLSTPARHGPIISPLSAPA
RRHAPLRRSRPLPPLFFSPALLNVGTPEAALILLVGYFVLGPQDLYRVAK
EVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEINNVRQNFFQK
FLDVRAERTLDQLEEKGVDVEALTGGMGEEDEWGNRLKEVQRRKEEEAAA
KVLMEAEDEGRKRKRRRRKGRREGR

mRNA from alignment at KK037256.1:217066..218583-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9833 ID=rna9833|Name=rna9833|organism=Nannochloropsis gaditana|type=mRNA|length=1518bp|location=Sequence derived from alignment at KK037256.1:217066..218583- (Nannochloropsis gaditana)
CTCGCGCGTCTCCGTCCCTTCCAGTTTCTCCTCTCCATAACGTGAACTCT
CAAATGCTCCTTCCTGTCTTTCGCATCACATTAGCAGATGTCCTCTTCAG
CCCCGCCCGGCCCCACTTCCCTTGTTCCATCGCCCTTGTCCTTGTCATTC
ACCCCCGCGGGAGGAAGAAGCAGACGAAGCTGTGGACGGCGGTCCTTTTC
CATCTGCTCGTCCTCCCTCTCAAGAACCACAGCACCCGGGTTAGGAATAT
TACAAAGAAGAACGAGACGAGCCTGGTCCTCCATTTGTCTCAGATTGCTT
GCCAGGCACGCCCAAGACGGGCATCACCCTCTTCCTAGGCGCTTCTGTCC
CTGCTTCCCTCATCTGGCCTTTCCACTTCTCCTCCTCCTGTGCCTCCTGT
GTACACATCTTTCCACCTCCAAGCCCCACCAACATGCCTCCGCTTTCCTG
AATGCCCCTCTCCACAGCCAACACGTGACACGGTGCGTGGCATGGTTTTG
ACCCCCCCCCCTTCTTCCATCCTCCTCTCCACTTCAACCTCCTCCCTCCA
TATCCCTCCCCCACCTCGCGCCCTCTAGGCTCTCCACCCCAGCCCGCCAC
GGCCCCATCATCTCTCCTCTCTCGGCTCCTGCCCGGCGTCATGCCCCTCT
CCGTCGATCCCGCCCCCTGCCTCCCCTTTTCTTCTCCCCCGCCCTCCTCA
ACGTGGGGACTCCCGAGGCTGCCCTCATCCTCCTGGTGGGCTATTTCGTG
CTCGGTCCACAAGATCTGTACCGCGTGGCCAAGGAGGTCGGCCAGCTTCT
TTCGAACCTGCAGACGGCGGGCTCGGATGCCTGGAAGGTACGGACCCGGG
GCAACTGCTTTTCAAACGTTTAAATTGCTGGGGGAGGGGGGGAGCGGTTC
GGTAAGAGAGAAGGTGGGGGTGACGCCTGAGTCACTGAAAAATGGACTTT
GCATTTGTATGGAAGGCACCTCCCCCCCTCCTCTCTCGTCTTCTTGTCTC
TGACCAGTGTGCTGTCCCTGCACCTCCCCCAGGTGTTCCAGGAGGCGATG
GAAGCGGAAGGAACCATGGCGGCCATGGGTGCGAGTGTGAACGAGATCAA
CAATGTGAGTCCATCGCCGGGATTCATCCTCAGCTCTGGATGTTGTTGTC
TTCTTCCCTCCTCAGACGTCGGCTTCCTCCCGTCGCGCCCGCCCTTGCCC
AGTCCCTCCTCCCTCCCTCATCCCCTTTCTCCCCCCCTTTTCCTTCCTCC
CCTTCCCGCTTTAATCCAGGTTCGGCAGAATTTCTTCCAGAAATTTCTGG
ACGTGCGGGCGGAACGGACGCTGGACCAACTCGAGGAGAAGGGGGTGGAC
GTTGAGGCCTTGACGGGGGGGATGGGGGAGGAAGACGAATGGGGCAACCG
TCTTAAGGAGGTGCAGCGGCGGAAAGAGGAGGAGGCAGCGGCCAAGGTCT
TGATGGAGGCGGAGGATGAAGGAAGGAAGAGGAAGAGGAGGAGGAGGAAG
GGGCGGAGGGAGGGAAGG

Coding sequence (CDS) from alignment at KK037256.1:217066..218583-

>rna9833 ID=rna9833|Name=rna9833|organism=Nannochloropsis gaditana|type=CDS|length=3900bp|location=Sequence derived from alignment at KK037256.1:217066..218583- (Nannochloropsis gaditana)
GTTCGGCAGAATTTCTTCCAGAAATTTCTGGACGTGCGGGCGGAACGGAC
GCTGGACCAACTCGAGGAGAAGGGGGTGGACGTTGAGGCCTTGACGGGGG
GGATGGGGGAGGAAGACGAATGGGGCAACCGTCTTAAGGAGGTGCAGCGG
CGGAAAGAGGAGGAGGCAGCGGCCAAGGTCTTGATGGAGGCGGAGGATGA
AGGAAGGAAGAGGAAGAGGAGGAGGAGGAAGGGGCGGAGGGAGGGAAGGG
TGTTCCAGGAGGCGATGGAAGCGGAAGGAACCATGGCGGCCATGGGTGCG
AGTGTGAACGAGATCAACAATGCTCTCCACCCCAGCCCGCCACGGCCCCA
TCATCTCTCCTCTCTCGGCTCCTGCCCGGCGTCATGCCCCTCTCCGTCGA
TCCCGCCCCCTGCCTCCCCTTTTCTTCTCCCCCGCCCTCCTCAACGTGGG
GACTCCCGAGGCTGCCCTCATCCTCCTGGTGGGCTATTTCGTGCTCGGTC
CACAAGATCTGTACCGCGTGGCCAAGGAGGTCGGCCAGCTTCTTTCGAAC
CTGCAGACGGCGGGCTCGGATGCCTGGAAGATGTCCTCTTCAGCCCCGCC
CGGCCCCACTTCCCTTGTTCCATCGCCCTTGTCCTTGTCATTCACCCCCG
CGGGAGGAAGAAGCAGACGAAGCTGTGGACGGCGGTCCTTTTCCATCTGC
TCGTCCTCCCTCTCAAGAACCACAGCACCCGGGTTAGGAATATTACAAAG
AAGAACGAGACGAGCCTGGTCCTCCATTTGTCTCAGATTGCTTGCCAGGC
ACGCCCAAGACGGGCATCACCCTCTTCCTAGGCGCTTCTGTCCCTGCTTC
CCTCATCTGGCCTTTCCACTTCTCCTCCTCCTGTGCCTCCTGTGTACACA
TCTTTCCACCTCCAAGCCCCACCAACATGCCTCCGCTTTCCTGAATGCCC
CTCTCCACAGCCAACACGTGACACGGTTCGGCAGAATTTCTTCCAGAAAT
TTCTGGACGTGCGGGCGGAACGGACGCTGGACCAACTCGAGGAGAAGGGG
GTGGACGTTGAGGCCTTGACGGGGGGGATGGGGGAGGAAGACGAATGGGG
CAACCGTCTTAAGGAGGTGCAGCGGCGGAAAGAGGAGGAGGCAGCGGCCA
AGGTCTTGATGGAGGCGGAGGATGAAGGAAGGAAGAGGAAGAGGAGGAGG
AGGAAGGGGCGGAGGGAGGGAAGGGTGTTCCAGGAGGCGATGGAAGCGGA
AGGAACCATGGCGGCCATGGGTGCGAGTGTGAACGAGATCAACAATGCTC
TCCACCCCAGCCCGCCACGGCCCCATCATCTCTCCTCTCTCGGCTCCTGC
CCGGCGTCATGCCCCTCTCCGTCGATCCCGCCCCCTGCCTCCCCTTTTCT
TCTCCCCCGCCCTCCTCAACGTGGGGACTCCCGAGGCTGCCCTCATCCTC
CTGGTGGGCTATTTCGTGCTCGGTCCACAAGATCTGTACCGCGTGGCCAA
GGAGGTCGGCCAGCTTCTTTCGAACCTGCAGACGGCGGGCTCGGATGCCT
GGAAGATGTCCTCTTCAGCCCCGCCCGGCCCCACTTCCCTTGTTCCATCG
CCCTTGTCCTTGTCATTCACCCCCGCGGGAGGAAGAAGCAGACGAAGCTG
TGGACGGCGGTCCTTTTCCATCTGCTCGTCCTCCCTCTCAAGAACCACAG
CACCCGGGTTAGGAATATTACAAAGAAGAACGAGACGAGCCTGGTCCTCC
ATTTGTCTCAGATTGCTTGCCAGGCACGCCCAAGACGGGCATCACCCTCT
TCCTAGGCGCTTCTGTCCCTGCTTCCCTCATCTGGCCTTTCCACTTCTCC
TCCTCCTGTGCCTCCTGTGTACACATCTTTCCACCTCCAAGCCCCACCAA
CATGCCTCCGCTTTCCTGAATGCCCCTCTCCACAGCCAACACGTGACACG
GTTCGGCAGAATTTCTTCCAGAAATTTCTGGACGTGCGGGCGGAACGGAC
GCTGGACCAACTCGAGGAGAAGGGGGTGGACGTTGAGGCCTTGACGGGGG
GGATGGGGGAGGAAGACGAATGGGGCAACCGTCTTAAGGAGGTGCAGCGG
CGGAAAGAGGAGGAGGCAGCGGCCAAGGTCTTGATGGAGGCGGAGGATGA
AGGAAGGAAGAGGAAGAGGAGGAGGAGGAAGGGGCGGAGGGAGGGAAGGG
TGTTCCAGGAGGCGATGGAAGCGGAAGGAACCATGGCGGCCATGGGTGCG
AGTGTGAACGAGATCAACAATGCTCTCCACCCCAGCCCGCCACGGCCCCA
TCATCTCTCCTCTCTCGGCTCCTGCCCGGCGTCATGCCCCTCTCCGTCGA
TCCCGCCCCCTGCCTCCCCTTTTCTTCTCCCCCGCCCTCCTCAACGTGGG
GACTCCCGAGGCTGCCCTCATCCTCCTGGTGGGCTATTTCGTGCTCGGTC
CACAAGATCTGTACCGCGTGGCCAAGGAGGTCGGCCAGCTTCTTTCGAAC
CTGCAGACGGCGGGCTCGGATGCCTGGAAGATGTCCTCTTCAGCCCCGCC
CGGCCCCACTTCCCTTGTTCCATCGCCCTTGTCCTTGTCATTCACCCCCG
CGGGAGGAAGAAGCAGACGAAGCTGTGGACGGCGGTCCTTTTCCATCTGC
TCGTCCTCCCTCTCAAGAACCACAGCACCCGGGTTAGGAATATTACAAAG
AAGAACGAGACGAGCCTGGTCCTCCATTTGTCTCAGATTGCTTGCCAGGC
ACGCCCAAGACGGGCATCACCCTCTTCCTAGGCGCTTCTGTCCCTGCTTC
CCTCATCTGGCCTTTCCACTTCTCCTCCTCCTGTGCCTCCTGTGTACACA
TCTTTCCACCTCCAAGCCCCACCAACATGCCTCCGCTTTCCTGAATGCCC
CTCTCCACAGCCAACACGTGACACGGTTCGGCAGAATTTCTTCCAGAAAT
TTCTGGACGTGCGGGCGGAACGGACGCTGGACCAACTCGAGGAGAAGGGG
GTGGACGTTGAGGCCTTGACGGGGGGGATGGGGGAGGAAGACGAATGGGG
CAACCGTCTTAAGGAGGTGCAGCGGCGGAAAGAGGAGGAGGCAGCGGCCA
AGGTCTTGATGGAGGCGGAGGATGAAGGAAGGAAGAGGAAGAGGAGGAGG
AGGAAGGGGCGGAGGGAGGGAAGGGTGTTCCAGGAGGCGATGGAAGCGGA
AGGAACCATGGCGGCCATGGGTGCGAGTGTGAACGAGATCAACAATGCTC
TCCACCCCAGCCCGCCACGGCCCCATCATCTCTCCTCTCTCGGCTCCTGC
CCGGCGTCATGCCCCTCTCCGTCGATCCCGCCCCCTGCCTCCCCTTTTCT
TCTCCCCCGCCCTCCTCAACGTGGGGACTCCCGAGGCTGCCCTCATCCTC
CTGGTGGGCTATTTCGTGCTCGGTCCACAAGATCTGTACCGCGTGGCCAA
GGAGGTCGGCCAGCTTCTTTCGAACCTGCAGACGGCGGGCTCGGATGCCT
GGAAGATGTCCTCTTCAGCCCCGCCCGGCCCCACTTCCCTTGTTCCATCG
CCCTTGTCCTTGTCATTCACCCCCGCGGGAGGAAGAAGCAGACGAAGCTG
TGGACGGCGGTCCTTTTCCATCTGCTCGTCCTCCCTCTCAAGAACCACAG
CACCCGGGTTAGGAATATTACAAAGAAGAACGAGACGAGCCTGGTCCTCC
ATTTGTCTCAGATTGCTTGCCAGGCACGCCCAAGACGGGCATCACCCTCT
TCCTAGGCGCTTCTGTCCCTGCTTCCCTCATCTGGCCTTTCCACTTCTCC
TCCTCCTGTGCCTCCTGTGTACACATCTTTCCACCTCCAAGCCCCACCAA
CATGCCTCCGCTTTCCTGAATGCCCCTCTCCACAGCCAACACGTGACACG

Synonyms

Publications