EWM20869.1, cds9802 (CDS) Nannochloropsis gaditana

Overview
NameEWM20869.1
Unique Namecds9802
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:218102..218496 -
Alignment locationKK037256.1:217747..218005 -
Alignment locationKK037256.1:217480..217551 -
Alignment locationKK037256.1:217066..217314 -

Link to JBrowse

Properties
Property NameValue
Start range217066
Start range.
Protein idEWM20869.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100787g1.1582.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:218102..218496 -
KK037256.1supercontigKK037256.1:217747..218005 -
KK037256.1supercontigKK037256.1:217480..217551 -
KK037256.1supercontigKK037256.1:217066..217314 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20869.1 vs. NCBI_GenBank
Match: gi|585100812|gb|EWM20869.1| (hypothetical protein Naga_100787g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query:    1 MSSSAPPGPTSLVPSPLSLSFTPAGGRSRRSCGRRSFSICSSSLSRTTAPGLGILQRRTRRAWSSICLRLLARHAQDGHHPLPRRFCPCFPHLAFPLLLLLCLLCTHLSTSKPHQHASAFLNAPLHSQHVTRLSTPARHGPIISPLSAPARRHAPLRRSRPLPPLFFSPALLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEINNVRQNFFQKFLDVRAERTLDQLEEKGVDVEALTGGMGEEDEWGNRLKEVQRRKEEEAAAKVLMEAEDEGRKRKRRRRKGRREGR 325
            MSSSAPPGPTSLVPSPLSLSFTPAGGRSRRSCGRRSFSICSSSLSRTTAPGLGILQRRTRRAWSSICLRLLARHAQDGHHPLPRRFCPCFPHLAFPLLLLLCLLCTHLSTSKPHQHASAFLNAPLHSQHVTRLSTPARHGPIISPLSAPARRHAPLRRSRPLPPLFFSPALLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEINNVRQNFFQKFLDVRAERTLDQLEEKGVDVEALTGGMGEEDEWGNRLKEVQRRKEEEAAAKVLMEAEDEGRKRKRRRRKGRREGR
Sbjct:    1 MSSSAPPGPTSLVPSPLSLSFTPAGGRSRRSCGRRSFSICSSSLSRTTAPGLGILQRRTRRAWSSICLRLLARHAQDGHHPLPRRFCPCFPHLAFPLLLLLCLLCTHLSTSKPHQHASAFLNAPLHSQHVTRLSTPARHGPIISPLSAPARRHAPLRRSRPLPPLFFSPALLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEINNVRQNFFQKFLDVRAERTLDQLEEKGVDVEALTGGMGEEDEWGNRLKEVQRRKEEEAAAKVLMEAEDEGRKRKRRRRKGRREGR 325          
BLAST of EWM20869.1 vs. NCBI_GenBank
Match: gi|1210511601|dbj|GAX29415.1| (hypothetical protein FisN_16Hh145 [Fistulifera solaris])

HSP 1 Score: 74.3294 bits (181), Expect = 1.164e-11
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 0
Query:  171 LLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEINN 242
            +L +GTPE A ILLVGYFVLGP DLY++ KEVG+ + N++T  +D    F+  ME++  +  +  +  E+N+
Sbjct:    7 VLGIGTPELATILLVGYFVLGPSDLYKIVKEVGKFIQNVRTFSTDLTTTFESNMESQLQLQDIRKAQQELND 78          
BLAST of EWM20869.1 vs. NCBI_GenBank
Match: gi|1210514828|dbj|GAX26307.1| (hypothetical protein FisN_16Lh145 [Fistulifera solaris])

HSP 1 Score: 74.3294 bits (181), Expect = 1.496e-11
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 0
Query:  171 LLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEINN 242
            +L +GTPE A ILLVGYFVLGP DLY++ KEVG+ + N++T  +D    F+  ME++  +  +  +  E+N+
Sbjct:    7 VLGIGTPELATILLVGYFVLGPSDLYKIVKEVGKFIQNVRTFSTDLTTTFESNMESQLQLQDIRKAQQELND 78          
BLAST of EWM20869.1 vs. NCBI_GenBank
Match: gi|397570884|gb|EJK47508.1| (hypothetical protein THAOC_33764 [Thalassiosira oceanica])

HSP 1 Score: 74.7146 bits (182), Expect = 4.064e-11
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 0
Query:  134 STPARHGPIIS--PLSAPARRHAPLRR----------SRPLPPLFFSPALLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEINN 242
            S P R G  ++  P +   R H  L+R          +  L  +     +L VG PE A+ LLVGYFVLGP DLY++ KE+G+ + N +T G++A K F+  ME +  +  +  +  E+N+
Sbjct:   35 SIPTRAGRTVAHQPQTNHNRHHDALQRRTGNRQARQSTTSLNFMGSDGGILGVGAPEVAVTLLVGYFVLGPSDLYKLVKEIGKFVQNFRTLGTEAAKSFEGTMENQLEIEGLRKAQAELND 155          
BLAST of EWM20869.1 vs. NCBI_GenBank
Match: gi|1072233770|gb|OEU18500.1| (hypothetical protein FRACYDRAFT_260421 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 67.781 bits (164), Expect = 5.671e-9
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  160 RPLPPLFF---SPALLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEINN 242
            R    L+F      +L +GTPE   ILLVGYFVLGP DL+++ KEVG+ + N+Q+  ++A    + +ME +  +  +  +  E+N+
Sbjct:   81 RSNTQLYFMGSDGGILGIGTPEIFTILLVGYFVLGPSDLFKLTKEVGKFVQNVQSFATEATNTLETSMEDQLQLEEIRKAQRELND 166          
BLAST of EWM20869.1 vs. NCBI_GenBank
Match: gi|219118030|ref|XP_002179798.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408851|gb|EEC48784.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 67.781 bits (164), Expect = 5.726e-9
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0
Query:  170 ALLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAE 227
             LL +G PE   ILLVGYFVLGP DLY++ KE+G+ + N+++ G+D    F+  ME +
Sbjct:   81 GLLGIGGPELFTILLVGYFVLGPSDLYKLVKEIGKFIQNIRSLGTDLSTTFESNMENQ 138          
BLAST of EWM20869.1 vs. NCBI_GenBank
Match: gi|224013148|ref|XP_002295226.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969188|gb|EED87530.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 67.3958 bits (163), Expect = 6.350e-9
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 0
Query:  168 SPALLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEIN 241
            S  LL+  T   A+ L+VGYFVLGP DLY++ KE+G+ + N +T G++A K F+  ME +  M  +  +  E+N
Sbjct:   81 SITLLHFTTTRQAVTLIVGYFVLGPSDLYKLVKEIGKFIQNFRTLGAEATKSFESTMENQLEMTELRKAQAELN 154          
The following BLAST results are available for this feature:
BLAST of EWM20869.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585100812|gb|EWM20869.1|0.000e+0100.00hypothetical protein Naga_100787g1, partial [Nanno... [more]
gi|1210511601|dbj|GAX29415.1|1.164e-1144.44hypothetical protein FisN_16Hh145 [Fistulifera sol... [more]
gi|1210514828|dbj|GAX26307.1|1.496e-1144.44hypothetical protein FisN_16Lh145 [Fistulifera sol... [more]
gi|397570884|gb|EJK47508.1|4.064e-1134.71hypothetical protein THAOC_33764 [Thalassiosira oc... [more]
gi|1072233770|gb|OEU18500.1|5.671e-937.21hypothetical protein FRACYDRAFT_260421 [Fragilario... [more]
gi|219118030|ref|XP_002179798.1|5.726e-948.28predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224013148|ref|XP_002295226.1|6.350e-941.89predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9833rna9833Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications