rna9829, rna9829 (mRNA) Nannochloropsis gaditana

Overview
Namerna9829
Unique Namerna9829
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1760
Alignment locationKK037256.1:209752..210319 -

Link to JBrowse

Properties
Property NameValue
Productprotein kinase
Orig transcript idgnl|cribi|Naga_102264g1.10255.mrna
Orig protein idgnl|cribi|Naga_102264g1.10255
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:209752..210319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102264g1gene9542Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20875.1cds9798Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9829rna9829-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9829 ID=rna9829|Name=rna9829|organism=Nannochloropsis gaditana|type=mRNA|length=1760bp
CTTCGCCGCGACCGTGGTGTGATTCGAGCTTGTCCTTCTTTAACGTTTTC
CGCTTTGGCGTCGCCGGTTGCTGCAGGGCACTTCTTTCCATCATCGTGCA
CTGACAAAAACGCGATGCTCTTACTTACAGCTTCACGACCTCCACGACTT
TACCTTCATCATCAGGATACACCTGTCGAAGGGAATTTATGACGGTGGGG
CACATGGACAAGAAACGAAAGCATTCTGCCGGCACGAAAAGACAGAACTC
GGTAGGGGGGGACATTCAGTTGCCCCAACAGCAAAAACGGGAACAAACGA
AGCAACAGCAACCCCGCAAGTCCAACGACGGCAAGCATGCGGACGACGAT
GATCCTAATAAACATGAAGACGATCATCCATTCAAGCGTGGCTCCATCAT
CATGGTCAAATGGGCGGGGGACGGAACTGACCGATTTTGTGATGTGATCG
AACGGGCTCAGAATGAAAAAACCGGGGAATGGAGTTACTATGTCCACTAC
CACGACTTCAATCGCCGCATGGATGAGTGGGTTAATATCCCTGCCATCCT
CAAACCGCCTTCTGTGGCAGGCGCGGAGCACAAGGCGATGAAGGAGCAAT
TAGAGCGGGAAAAGGAGCTCGCCGAACAGGCAGAGAAGCTGTGCGAAGCG
AGCGAAGAAGCAGGCATCCGGACCCGGCGCCAGAAACAACGCGGGCAGGA
GGAGGACGAAGTGCCCTTGGCGGCCCATTTAGAGCATGACGAGCACGAGG
GCCTGGATGAGGAGCAGTTGAAAGAGCACGAGGAGGTGACCAAGGTCAAG
AACGTCAAGTTCGTAGAGCTGGGCAAGTACCGGATGGAGACCTGGTACTA
TTCTCCCTTTCCCAAGGAGCTCTTCTCGGAGGGCCCCGCCTTGGACGTGC
TGTATTTTTGCGAGGCTTCGATGCGTTTTTTCAAGCATAAGTCCGAGCTG
CACCGTTGGCTGAGCAAAATGGACCCAAAGGACCGACATCCCCCCGGAGA
CGAGGTCTACCGAGACGCGAAGCTCAGCATTTTCGAGGTGGATGGGGGGG
AGCAGAAGCTGTATTGCCAGAACCTTTGCTACTTTGCCAAGCTCTTTCTT
GACCACAAGACTTTGTTCTACGACGTGGATCCCTTCCTCTTCTACGTCCT
CTGCGAGCACGACGGGCGGGGCTTTCACCCCGTCGGTTATTTCTCCAAGG
AAAAATATTCGGACGCGGGCTTCAATTTGGCCTGTATATTGACCTTCCCC
TCCTACCAGCGCAAAGGCTACGGGCGCTTCCTCATCAATTTCTCGTACGA
ATTAAGCAAGAAAGAGGAAAAGTTGGGGTCACCGGAAAAGCCGCTCTCTG
ACCTTGGCCTGGTCAGTTACCGTTCCTATTGGGCGTCGCAATTGTTGGCC
TTGTTGAAGAGGATGTACGCGGAGGCAGCGCAAGCGAGTGGGACCCCCGT
GGAAGAAGTGCGCCTTCCCCCTCTCTCCATCATGGACCTGGCCAAGATGA
CCTCCTTCGTGACCGAGGACGTGGTCTCCACCTGCACCTTCCTGGGCCTC
CTCCGTTACGTCTCGGGTCAGTATTTGATCTACGCGCCGTTACCCTTGGT
CGAGGAACTGGCCCGAAAGTACCCGGTGAAACCTCCCGTCGTGGACGCGG
CGCGGCTGCACTGGGCCCCTCTGATCACCATGGACGTCAAGCGGGACAAG
TGGTCGATCCATTCCAAGGTTCAGCCTCCGGAGCTGCAGCACCATGCCAG
GACGGCATAG
back to top

protein sequence of rna9829

>rna9829-protein ID=rna9829-protein|Name=rna9829|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
PPSSTHAGYTQAVDWWSLGTVCFEMLYGSPPFYDPNFSKMCNKILRQPLR
FPRRPPPPPGHGGRAEEGRGARAEEGEGKGRSQGGETGTPCPPRRSLRKR
RPSCGVSWRNLPPDESAPSSPPTPLPWSFPLPHSFVPPAPLLPECNPPVT
back to top

mRNA from alignment at KK037256.1:209752..210319-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9829 ID=rna9829|Name=rna9829|organism=Nannochloropsis gaditana|type=mRNA|length=568bp|location=Sequence derived from alignment at KK037256.1:209752..210319- (Nannochloropsis gaditana)
CCTCCCTCCAGCACCCATGCTGGCTACACCCAGGCAGTGGACTGGTGGAG
TCTGGGCACCGTCTGCTTCGAAATGCTCTACGGCTCCCCGCCATTCTACG
ACCCAAACTTCTCAAAGATGTGCAATAAAATCTTGCGGCAGCCGTTGCGG
TTCCCTCGGCGCCCCCCCCCCCCGCCTGGACACGGAGGGAGGGCGGAGGA
AGGGAGAGGAGCGCGAGCGGAAGAGGGAGAGGGGAAGGGCCGGAGCCAGG
GAGGGGAGACAGGAACGCCATGCCCTCCCCGCAGGAGCTTAAGGAAGCGC
AGGCCTTCCTGCGGGGTCTCCTGGAGAAATCTCCCGCCCGACGAATCGGC
ACCGTCCAGCCCGCCCACCCCCCTTCCATGGTCCTTCCCCCTTCCCCACT
CCTTCGTCCCTCCCGCCCCGCTCCTTCCCGAATGCAATCCCCCCGTAACT
TGATTGGTGAAGGTACCTTAAGCCTCGACCCCCTCGACATTCGGGCACAC
CCCTTCTTTGCCAAGATGGATTGGACGGCATTGGAAAACCGACGGCTGCC
CCCCCCGCAGCGACTGCC
back to top

Coding sequence (CDS) from alignment at KK037256.1:209752..210319-

>rna9829 ID=rna9829|Name=rna9829|organism=Nannochloropsis gaditana|type=CDS|length=453bp|location=Sequence derived from alignment at KK037256.1:209752..210319- (Nannochloropsis gaditana)
CCTCCCTCCAGCACCCATGCTGGCTACACCCAGGCAGTGGACTGGTGGAG
TCTGGGCACCGTCTGCTTCGAAATGCTCTACGGCTCCCCGCCATTCTACG
ACCCAAACTTCTCAAAGATGTGCAATAAAATCTTGCGGCAGCCGTTGCGG
TTCCCTCGGCGCCCCCCCCCCCCGCCTGGACACGGAGGGAGGGCGGAGGA
AGGGAGAGGAGCGCGAGCGGAAGAGGGAGAGGGGAAGGGCCGGAGCCAGG
GAGGGGAGACAGGAACGCCATGCCCTCCCCGCAGGAGCTTAAGGAAGCGC
AGGCCTTCCTGCGGGGTCTCCTGGAGAAATCTCCCGCCCGACGAATCGGC
ACCGTCCAGCCCGCCCACCCCCCTTCCATGGTCCTTCCCCCTTCCCCACT
CCTTCGTCCCTCCCGCCCCGCTCCTTCCCGAATGCAATCCCCCCGTAACT
TGA
back to top
Synonyms
Publications