rna9819, rna9819 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9819
Unique Name	rna9819
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1954
Alignment location	KK037256.1:180407..182520 +

Link to JBrowse

Properties


Property Name	Value
Product	Ovarian tumor, otubain
Orig transcript id	gnl\|cribi\|Naga_100201g11.6912.mrna
Orig protein id	gnl\|cribi\|Naga_100201g11.6912
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:180407..182520 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100201g11	gene9533	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9819	rna9819-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20887.1	cds9788	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:180407..182520+
coding sequence from alignment at KK037256.1:180407..182520+

mRNA sequence

>rna9819 ID=rna9819|Name=rna9819|organism=Nannochloropsis gaditana|type=mRNA|length=1954bp
CCAGCTATTCTTACGAATAAGTAATTGCCTTCGGAGTCATATGTGCCATG
ATAATCCACCTACAAAGGAGCCCGCATAGTCACAAACAGCTAAAGAAAGG
ATCACCACAAGGATGACGGCTTCCCAATCCCCTTCCACATCTCATCAGGG
TAAAGAAATCACCTCCTCCCTGACAAAAACTTCAAACCTAAGGGCCCAAT
CTGTCGACAAGCGCTGTTTACAGCTGCTATGCGTCGATGCGCCTCCCCGT
TTGGAATGATTCCTCCCGAGGAATCAGAATGCAACGACGTAGGGGAAGGC
CATGGCATAGAAGCAAGAGAAGCTGAGTTACAGCCCGCAGTTGACAGCTT
GGCCTCAAGCATGTCGTACCATCCTTTAGTAGAAGACCCCGAATGGAAAC
TCTTCGCGTCGTTCGACAGTCTGGATTTCAGTTTTGTGGGGGGAGCTATC
GGAGTCTGTCGGCCAGTACCACAAGAGTTTTCCCCGATTTACAAAGCCAC
CCTGACGATGCTGAAGCCCACGATCCTCCGACTCACTGGCCTTGGATCTC
TCTTTCTTGGCAAAAAAGAGCGCGAAGTCATGCTTTGGGACACACCAATT
TCCCCCACAGCCGCTTCCGTCAGTCGACCATCCTCCTCCCGCCCTCCCGC
AGACAATTTGCGATTAGCGGATCAGATGCTTCGTCTCGCCTTGGTGGGGA
AGCCACGCCGTTACTCCTACTGGTATTTGCAATATTTCACAACTACGGAC
GTCGGTAAATTACTGGGGCGATGGCATGGAGATTATAGGGAGGAGTCAAT
GGAGGGACGGAGGCAGGGAGAGAGCGTGGAGAACAACGTGATCCTGGCTA
AGATCGAAGAGATGACAGGGACGAGGATCTTGGTGGCGCCCCATGATGGA
ATGGGGGTGCGTCGGTGTTTCCTGCTGATGGGCGAAGAGGAGTTGGTGAC
ACGAGCGCTAACTTTGTTACAGGGCGCCGTCGCGCAAAAGATATGCCCGA
GTCGAAAGGAAGGGGCGGAGATACTGGCGAAGATGGGAGGGAGGGAGGGA
GGACTAGGCAGGGACGAAAGATTGGAGGAGATCCGCCTCGAGTTGCGGGA
TAAACACAAGCTGAGGATGATGGAGGTGCAGGTGAGTGGATGGGAATGAC
GCTGCACGGGACTTGAAGAGAGAATGGGTGATGGTGGTGTCCTGGCATGC
CCAACGCACGACCCCATCGAGCAAATATGCCTCCATGTTTTCCTTCCCTA
CCCTCCGGAAGCCAGCTATCACCGTTACCGTGCCTCACTCTCAGTCCTCT
AGTATCCTCTTTCTCTGCCTCAATGCCCGCAGCGAGATGGAAACTGCCTC
TTTCGAGCCCTCTCGGCTTTCGAGCATGGCACCGAGAGCCAGCACAAGCA
GGTGCGCGCCATGATTGTCGCCCGCTTGGAGGAGGCCCCGGAGGCCATGG
CAGTGACGGCACTAGTGGAAGGTGTTTCGGAGGAAGAGTATGTGAAAGGC
ATGGCCCAAGACCGGCAGTGGGGGGGCTACACCGAGTGCATCGCATATTC
GGAGGCAAGGGGAAGGTCTGTGCGCCTGTTCGTGGAGAACGAGAAAATTG
GACTGCGTTGCACGGACATTGACGCCGGACAAGGGCCTCAGCAGGACGAT
GGGAGCCGAGTACACTTGTTACTTTACAAATCGCACTACTGGTTACTAGT
GCGAGGGTGATCTATGATCGCATTAGTTGAAGGAAATTATCAGATTCAGC
AGTTTTCAACATTCGTGCACAGCGATTTTTAAAAACATCGTTTTGAGAAA
TGTATGTGAGCATGTACAAGTTTGTGGTGAGGTTAAGATAGCTGTCAACC
ACCTTAAAATTGGAGTCGCTCAGAACAGAACTGATCTGCTCGATTGAATT
TCATATACACATTTATATAATTTCTGGAAGAAGAATGTGAAGTAGGCGAA
TGTA

protein sequence of rna9819

>rna9819-protein ID=rna9819-protein|Name=rna9819|organism=Nannochloropsis gaditana|type=polypeptide|length=426bp
MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPL
VEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTIL
RLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQM
LRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESV
ENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGA
VAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEV
QRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVS
EEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAG
QGPQQDDGSRVHLLLYKSHYWLLVRG

mRNA from alignment at KK037256.1:180407..182520+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9819 ID=rna9819|Name=rna9819|organism=Nannochloropsis gaditana|type=mRNA|length=2114bp|location=Sequence derived from alignment at KK037256.1:180407..182520+ (Nannochloropsis gaditana)
CCAGCTATTCTTACGAATAAGTAATTGCCTTCGGAGTCATATGTGCCATG
ATAATCCACCTACAAAGGAGCCCGCATAGTCACAAACAGCTAAAGAAAGG
ATCACCACAAGGATGACGGCTTCCCAATCCCCTTCCACATCTCATCAGGG
TAAAGaaatcacctcctccctgacaAAAACTTCAAACCTAAGGGCCCAAT
CTGTCGACAAGCGCTGTTTACAGCTGCTATGCGTCGATGCGCCTCCCCGT
TTGGAATGATTCCTCCCGAGGAATCAGAATGCAACGACGTAGGGGAAGGC
CATGGCATAGAAGCAAGAGAAGCTGAGTTACAGCCCGCAGTTGACAGCTT
GGCCTCAAGCATGTCGTACCATCCTTTAGTAGAAGACCCCGAATGGAAAC
TCTTCGCGTCGTTCGACAGTCTGGATTTCAGTTTTGTGGGGGGAGCTATC
GGAGTCTGTCGGCCAGTACCACAAGAGGTGAGTGAGGGACGTATTTTTCC
GGTCTTCCaaaagggggagagcagCTGTTGAGGCAAAGCTTTAATTGATT
ATTAACGAATAGAGCTGAAACAGAAACGTGAGCACTTCTCATTCCCCTTT
GCCTGCTCTGTCGATCTTCTCTTCTGCTCTTCCTCAGTTTTCCCCGATTT
ACAAAGCCACCCTGACGATGCTGAAGCCCACGATCCTCCGACTCACTGGC
CTTGGAtctctctttcttggcaAAAAAGAGCGCGAAGTCATGCTTTGGGA
CACACCAATTTCCCCCACAGCCGCTTCCGTCAGTcgaccatcctcctccc
gccctcccgcagACAATTTGCGATTAGCGGATCAGATGCTTCGTCTCGCC
TTGGTGGGGAAGCCACGCCGTTACTCCTACTGGTATTTGCAATATTTCAC
AACTACGGACGTCGGTAAATTACTGGGGCGATGGCATGGAGATTATAGGG
AGGAGTCaatggagggacggaggcagggagagagcgtGGAGAACAACGTG
ATCCTGGCTAAGATCGAAGAGATGACAGGGACGAGGATCTTGGTGGCGCC
CCATGATGGAATGGGGGTGCGTCGGTGTTTCCTGCTGATGGGCGAAGAGG
AGTTGGTGACACGAGCGCTAACTTTGTTACAGGGCGCCGTCGCGCAAAAG
ATATGCCCGAGtcgaaaggaaggggcggagataCTGGcgaagatgggagg
gagggagggaggactaGGCAGGGACGAAAGATTGGAGGAGATCCGCCTCG
AGTTGCGGGATAAACACAAGctgaggatgatggaggtgCAGGTGAGTGGA
TGGGAATGACGCTGCACGGGACTTGAAGAGAGAATGGGTGATGGTGGTGT
CCTGGCATGCCCAACGCACGACCCCATCGAGCAAATATGCCTCCATgttt
tccttccctacccTCCGGAAGCCAGCTATCACCGTTACCGTGCCTCACTC
TCAGTCCTCTAGtatcctctttctctgcctcaaTGCCCGCAGCGAGATGG
AAACTGCCTCTTTCGAGCCCTCTCGGCTTTCGAGCATGGCACCGAGAGCC
AGCACAAGCAGGTGCGCGCCATGATTGTCGcccgcttggaggaggccccG
GAGGCCATGGCAGTGACGGCACTAGTGGAAGGTGTTTCGGAGGAAGAGTA
TGTGAAAGGCATGGCCCAAGACCGGCAGTGGGGGGGCTACACCGAGTGCA
TCGCATATTcggaggcaaggggaaggtCTGTGCGCCTGTTCGTGGAGAAC
GAGAAAATTGGACTGCGTTGCACGGACATTGACGCCGGACAAGGGCCTCA
GCAGGACGATGGGAGCCGAGTACACTTGTTACTTTACAAATCGCACTACT
GGTTACTAGTGCGAGGGTGATCTATGATCGCATTAGTTGAAGGAAATTAT
CAGATTCAGCAGTTTTCAACATTCGTGCACAGCGATTTTTAAAAACATCG
TTTTGAGAAATGTATGTGAGCATGTACAAGTTTGTGGTGAGGTTAAGATA
GCTGTCAACCACCTTAAAATTGGAGTCGCTCAGAACAGAACTGATCTGCT
CGATTGAATTTCATATACACATTTATATAATTTCTGGAAGAAGAATGTGA
AGTAGGCGAATGTA

Coding sequence (CDS) from alignment at KK037256.1:180407..182520+

>rna9819 ID=rna9819|Name=rna9819|organism=Nannochloropsis gaditana|type=CDS|length=3843bp|location=Sequence derived from alignment at KK037256.1:180407..182520+ (Nannochloropsis gaditana)
ATGCGTCGATGCGCCTCCCCGTTTGGAATGATTCCTCCCGAGGAATCAGA
ATGCAACGACGTAGGGGAAGGCCATGGCATAGAAGCAAGAGAAGCTGAGT
TACAGCCCGCAGTTGACAGCTTGGCCTCAAGCATGTCGTACCATCCTTTA
GTAGAAGACCCCGAATGGAAACTCTTCGCGTCGTTCGACAGTCTGGATTT
CAGTTTTGTGGGGGGAGCTATCGGAGTCTGTCGGCCAGTACCACAAGAGT
TTTCCCCGATTTACAAAGCCACCCTGACGATGCTGAAGCCCACGATCCTC
CGACTCACTGGCCTTGGAtctctctttcttggcaAAAAAGAGCGCGAAGT
CATGCTTTGGGACACACCAATTTCCCCCACAGCCGCTTCCGTCAGTcgac
catcctcctcccgccctcccgcagACAATTTGCGATTAGCGGATCAGATG
CTTCGTCTCGCCTTGGTGGGGAAGCCACGCCGTTACTCCTACTGGTATTT
GCAATATTTCACAACTACGGACGTCGGTAAATTACTGGGGCGATGGCATG
GAGATTATAGGGAGGAGTCaatggagggacggaggcagggagagagcgtG
GAGAACAACGTGATCCTGGCTAAGATCGAAGAGATGACAGGGACGAGGAT
CTTGGTGGCGCCCCATGATGGAATGGGGGTGCGTCGGTGTTTCCTGCTGA
TGGGCGAAGAGGAGTTGGTGACACGAGCGCTAACTTTGTTACAGGGCGCC
GTCGCGCAAAAGATATGCCCGAGtcgaaaggaaggggcggagataCTGGc
gaagatgggagggagggagggaggactaGGCAGGGACGAAAGATTGGAGG
AGATCCGCCTCGAGTTGCGGGATAAACACAAGctgaggatgatggaggtg
CAGCGAGATGGAAACTGCCTCTTTCGAGCCCTCTCGGCTTTCGAGCATGG
CACCGAGAGCCAGCACAAGCAGGTGCGCGCCATGATTGTCGcccgcttgg
aggaggccccGGAGGCCATGGCAGTGACGGCACTAGTGGAAGGTGTTTCG
GAGGAAGAGTATGTGAAAGGCATGGCCCAAGACCGGCAGTGGGGGGGCTA
CACCGAGTGCATCGCATATTcggaggcaaggggaaggtCTGTGCGCCTGT
TCGTGGAGAACGAGAAAATTGGACTGCGTTGCACGGACATTGACGCCGGA
CAAGGGCCTCAGCAGGACGATGGGAGCCGAGTACACTTGTTACTTTACAA
ATCGCACTACTGGTTACTAGTGCGAGGGTGAATGCGTCGATGCGCCTCCC
CGTTTGGAATGATTCCTCCCGAGGAATCAGAATGCAACGACGTAGGGGAA
GGCCATGGCATAGAAGCAAGAGAAGCTGAGTTACAGCCCGCAGTTGACAG
CTTGGCCTCAAGCATGTCGTACCATCCTTTAGTAGAAGACCCCGAATGGA
AACTCTTCGCGTCGTTCGACAGTCTGGATTTCAGTTTTGTGGGGGGAGCT
ATCGGAGTCTGTCGGCCAGTACCACAAGAGTTTTCCCCGATTTACAAAGC
CACCCTGACGATGCTGAAGCCCACGATCCTCCGACTCACTGGCCTTGGAt
ctctctttcttggcaAAAAAGAGCGCGAAGTCATGCTTTGGGACACACCA
ATTTCCCCCACAGCCGCTTCCGTCAGTcgaccatcctcctcccgccctcc
cgcagACAATTTGCGATTAGCGGATCAGATGCTTCGTCTCGCCTTGGTGG
GGAAGCCACGCCGTTACTCCTACTGGTATTTGCAATATTTCACAACTACG
GACGTCGGTAAATTACTGGGGCGATGGCATGGAGATTATAGGGAGGAGTC
aatggagggacggaggcagggagagagcgtGGAGAACAACGTGATCCTGG
CTAAGATCGAAGAGATGACAGGGACGAGGATCTTGGTGGCGCCCCATGAT
GGAATGGGGGTGCGTCGGTGTTTCCTGCTGATGGGCGAAGAGGAGTTGGT
GACACGAGCGCTAACTTTGTTACAGGGCGCCGTCGCGCAAAAGATATGCC
CGAGtcgaaaggaaggggcggagataCTGGcgaagatgggagggagggag
ggaggactaGGCAGGGACGAAAGATTGGAGGAGATCCGCCTCGAGTTGCG
GGATAAACACAAGctgaggatgatggaggtgCAGCGAGATGGAAACTGCC
TCTTTCGAGCCCTCTCGGCTTTCGAGCATGGCACCGAGAGCCAGCACAAG
CAGGTGCGCGCCATGATTGTCGcccgcttggaggaggccccGGAGGCCAT
GGCAGTGACGGCACTAGTGGAAGGTGTTTCGGAGGAAGAGTATGTGAAAG
GCATGGCCCAAGACCGGCAGTGGGGGGGCTACACCGAGTGCATCGCATAT
TcggaggcaaggggaaggtCTGTGCGCCTGTTCGTGGAGAACGAGAAAAT
TGGACTGCGTTGCACGGACATTGACGCCGGACAAGGGCCTCAGCAGGACG
ATGGGAGCCGAGTACACTTGTTACTTTACAAATCGCACTACTGGTTACTA
GTGCGAGGGTGAATGCGTCGATGCGCCTCCCCGTTTGGAATGATTCCTCC
CGAGGAATCAGAATGCAACGACGTAGGGGAAGGCCATGGCATAGAAGCAA
GAGAAGCTGAGTTACAGCCCGCAGTTGACAGCTTGGCCTCAAGCATGTCG
TACCATCCTTTAGTAGAAGACCCCGAATGGAAACTCTTCGCGTCGTTCGA
CAGTCTGGATTTCAGTTTTGTGGGGGGAGCTATCGGAGTCTGTCGGCCAG
TACCACAAGAGTTTTCCCCGATTTACAAAGCCACCCTGACGATGCTGAAG
CCCACGATCCTCCGACTCACTGGCCTTGGAtctctctttcttggcaAAAA
AGAGCGCGAAGTCATGCTTTGGGACACACCAATTTCCCCCACAGCCGCTT
CCGTCAGTcgaccatcctcctcccgccctcccgcagACAATTTGCGATTA
GCGGATCAGATGCTTCGTCTCGCCTTGGTGGGGAAGCCACGCCGTTACTC
CTACTGGTATTTGCAATATTTCACAACTACGGACGTCGGTAAATTACTGG
GGCGATGGCATGGAGATTATAGGGAGGAGTCaatggagggacggaggcag
ggagagagcgtGGAGAACAACGTGATCCTGGCTAAGATCGAAGAGATGAC
AGGGACGAGGATCTTGGTGGCGCCCCATGATGGAATGGGGGTGCGTCGGT
GTTTCCTGCTGATGGGCGAAGAGGAGTTGGTGACACGAGCGCTAACTTTG
TTACAGGGCGCCGTCGCGCAAAAGATATGCCCGAGtcgaaaggaaggggc
ggagataCTGGcgaagatgggagggagggagggaggactaGGCAGGGACG
AAAGATTGGAGGAGATCCGCCTCGAGTTGCGGGATAAACACAAGctgagg
atgatggaggtgCAGCGAGATGGAAACTGCCTCTTTCGAGCCCTCTCGGC
TTTCGAGCATGGCACCGAGAGCCAGCACAAGCAGGTGCGCGCCATGATTG
TCGcccgcttggaggaggccccGGAGGCCATGGCAGTGACGGCACTAGTG
GAAGGTGTTTCGGAGGAAGAGTATGTGAAAGGCATGGCCCAAGACCGGCA
GTGGGGGGGCTACACCGAGTGCATCGCATATTcggaggcaaggggaaggt
CTGTGCGCCTGTTCGTGGAGAACGAGAAAATTGGACTGCGTTGCACGGAC
ATTGACGCCGGACAAGGGCCTCAGCAGGACGATGGGAGCCGAGTACACTT
GTTACTTTACAAATCGCACTACTGGTTACTAGTGCGAGGGTGA

Synonyms

Publications