EWM20887.1, cds9788 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|585100838|gb|EWM20887.1| (Ovarian tumor, otubain [Nannochloropsis gaditana]) HSP 1 Score: 873.618 bits (2256), Expect = 0.000e+0 Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 0 Query: 1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG 426 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG Sbjct: 1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG 426
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|585100839|gb|EWM20888.1| (Ovarian tumor, otubain [Nannochloropsis gaditana]) HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0 Identity = 302/304 (99.34%), Postives = 302/304 (99.34%), Query Frame = 0 Query: 1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDG 304 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQ G Sbjct: 1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQVSG 304
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|553190080|ref|XP_005855122.1| (cre-duo-3 protein [Nannochloropsis gaditana CCMP526] >gi|422293941|gb|EKU21241.1| cre-duo-3 protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 362.073 bits (928), Expect = 1.601e-122 Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0 Query: 249 GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG 426 GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEE PEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG Sbjct: 3 GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEVPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG 180
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|760449491|ref|XP_011401814.1| (OTU domain-containing protein 3 [Auxenochlorella protothecoides] >gi|675356329|gb|KFM28769.1| OTU domain-containing protein 3 [Auxenochlorella protothecoides]) HSP 1 Score: 64.3142 bits (155), Expect = 9.672e-8 Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 0 Query: 283 EEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEE-----YVKGMAQDRQWGGYTECIAYSEARGRSVRLF 384 +E+ LRD LR+ EVQ DGNC FR+LS HG E +H ++R+ +V L + E + E E+E Y + M+QD +W G+ E A S+ R++R++ Sbjct: 22 DELEKALRDV-GLRIQEVQADGNCFFRSLSVQLHGHEDEHAELRSQVVQHLRDNQE------VYEPFIEDERAWVDYCERMSQDAEWAGHPELHAASKVLRRNIRVY 121
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|145493429|ref|XP_001432710.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124399824|emb|CAK65313.1| unnamed protein product (macronuclear) [Paramecium tetraurelia]) HSP 1 Score: 63.5438 bits (153), Expect = 1.792e-7 Identity = 36/114 (31.58%), Postives = 67/114 (58.77%), Query Frame = 0 Query: 272 REGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFV 385 ++ LG + +E + E+ ++ L++ +V+ DGNCLFR+++ HG E HKQ+R + V ++E E + + + ++ ++Y+K M+ D +WGG E A S+A V F+ Sbjct: 37 KDNRLGYAKHFQEFQDEM-NQLGLQIRDVEGDGNCLFRSIADVLHGDEKYHKQLRRLAVQTMQENQEFFGL-FIEDDMTFDQYLKEMSSDGEWGGNLELQALSQA--LDVNFFI 146
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|145486740|ref|XP_001429376.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124396468|emb|CAK61978.1| unnamed protein product [Paramecium tetraurelia]) HSP 1 Score: 61.6178 bits (148), Expect = 6.667e-7 Identity = 32/91 (35.16%), Postives = 54/91 (59.34%), Query Frame = 0 Query: 295 LRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFV 385 L++ +V+ DGNCLFR+++ HG E HKQ+R + V ++E E + + + ++ +Y+K M+ D +WGG E A S+A V F+ Sbjct: 44 LQIRDVEGDGNCLFRSIADVLHGDERYHKQLRKLAVQTMQENQEFFGLF-IEDDMTFNQYLKEMSNDGEWGGNLELQALSQA--LDVNFFI 131 The following BLAST results are available for this feature:
BLAST of EWM20887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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