EWM20887.1, cds9788 (CDS) Nannochloropsis gaditana

Overview
NameEWM20887.1
Unique Namecds9788
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:180635..180883 +
Alignment locationKK037256.1:181044..181697 +
Alignment locationKK037256.1:181899..182276 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20887.1
ProductOvarian tumor, otubain
Orig transcript idgnl|cribi|Naga_100201g11.6912.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:180635..180883 +
KK037256.1supercontigKK037256.1:181044..181697 +
KK037256.1supercontigKK037256.1:181899..182276 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Homology
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|585100838|gb|EWM20887.1| (Ovarian tumor, otubain [Nannochloropsis gaditana])

HSP 1 Score: 873.618 bits (2256), Expect = 0.000e+0
Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 0
Query:    1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG 426
            MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG
Sbjct:    1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG 426          
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|585100839|gb|EWM20888.1| (Ovarian tumor, otubain [Nannochloropsis gaditana])

HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 302/304 (99.34%), Postives = 302/304 (99.34%), Query Frame = 0
Query:    1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDG 304
            MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQ  G
Sbjct:    1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQVSG 304          
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|553190080|ref|XP_005855122.1| (cre-duo-3 protein [Nannochloropsis gaditana CCMP526] >gi|422293941|gb|EKU21241.1| cre-duo-3 protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 362.073 bits (928), Expect = 1.601e-122
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0
Query:  249 GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG 426
            GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEE PEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG
Sbjct:    3 GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEVPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFVENEKIGLRCTDIDAGQGPQQDDGSRVHLLLYKSHYWLLVRG 180          
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|760449491|ref|XP_011401814.1| (OTU domain-containing protein 3 [Auxenochlorella protothecoides] >gi|675356329|gb|KFM28769.1| OTU domain-containing protein 3 [Auxenochlorella protothecoides])

HSP 1 Score: 64.3142 bits (155), Expect = 9.672e-8
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 0
Query:  283 EEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEE-----YVKGMAQDRQWGGYTECIAYSEARGRSVRLF 384
            +E+   LRD   LR+ EVQ DGNC FR+LS   HG E +H ++R+ +V  L +  E      + E   E+E     Y + M+QD +W G+ E  A S+   R++R++
Sbjct:   22 DELEKALRDV-GLRIQEVQADGNCFFRSLSVQLHGHEDEHAELRSQVVQHLRDNQE------VYEPFIEDERAWVDYCERMSQDAEWAGHPELHAASKVLRRNIRVY 121          
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|145493429|ref|XP_001432710.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124399824|emb|CAK65313.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 63.5438 bits (153), Expect = 1.792e-7
Identity = 36/114 (31.58%), Postives = 67/114 (58.77%), Query Frame = 0
Query:  272 REGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFV 385
            ++  LG  +  +E + E+ ++  L++ +V+ DGNCLFR+++   HG E  HKQ+R + V  ++E  E   +  + + ++ ++Y+K M+ D +WGG  E  A S+A    V  F+
Sbjct:   37 KDNRLGYAKHFQEFQDEM-NQLGLQIRDVEGDGNCLFRSIADVLHGDEKYHKQLRRLAVQTMQENQEFFGL-FIEDDMTFDQYLKEMSSDGEWGGNLELQALSQA--LDVNFFI 146          
BLAST of EWM20887.1 vs. NCBI_GenBank
Match: gi|145486740|ref|XP_001429376.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124396468|emb|CAK61978.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 61.6178 bits (148), Expect = 6.667e-7
Identity = 32/91 (35.16%), Postives = 54/91 (59.34%), Query Frame = 0
Query:  295 LRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGGYTECIAYSEARGRSVRLFV 385
            L++ +V+ DGNCLFR+++   HG E  HKQ+R + V  ++E  E   +  + + ++  +Y+K M+ D +WGG  E  A S+A    V  F+
Sbjct:   44 LQIRDVEGDGNCLFRSIADVLHGDERYHKQLRKLAVQTMQENQEFFGLF-IEDDMTFNQYLKEMSNDGEWGGNLELQALSQA--LDVNFFI 131          
The following BLAST results are available for this feature:
BLAST of EWM20887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585100838|gb|EWM20887.1|0.000e+0100.00Ovarian tumor, otubain [Nannochloropsis gaditana][more]
gi|585100839|gb|EWM20888.1|0.000e+099.34Ovarian tumor, otubain [Nannochloropsis gaditana][more]
gi|553190080|ref|XP_005855122.1|1.601e-12299.44cre-duo-3 protein [Nannochloropsis gaditana CCMP52... [more]
gi|760449491|ref|XP_011401814.1|9.672e-836.45OTU domain-containing protein 3 [Auxenochlorella p... [more]
gi|145493429|ref|XP_001432710.1|1.792e-731.58hypothetical protein [Paramecium tetraurelia strai... [more]
gi|145486740|ref|XP_001429376.1|6.667e-735.16hypothetical protein [Paramecium tetraurelia strai... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9819rna9819Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications