rna9816, rna9816 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9816
Unique Name	rna9816
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2718
Alignment location	KK037256.1:176220..177564 -

Link to JBrowse

Properties


Property Name	Value
Product	Tetratricopeptide TPR-1
Orig transcript id	gnl\|cribi\|Naga_100201g9.6918.mrna
Orig protein id	gnl\|cribi\|Naga_100201g9.6918
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:176220..177564 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100201g9	gene9531	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9816	rna9816-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20893.1	cds9785	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:176220..177564-
coding sequence from alignment at KK037256.1:176220..177564-

mRNA sequence

>rna9816 ID=rna9816|Name=rna9816|organism=Nannochloropsis gaditana|type=mRNA|length=2718bp
GGAGGAAGTGGGCGCTTTGATCGGGAACCGCGACGTGCACGAACATTTGC
TCCAAGACGTGACGCGCTGGAAAGAGGCGGCGGCCTCCCCGCTCCCCCAA
ATGCCCCCGCCTTCGGCCCCGGATACCGCCTCCCCCCCCCGGCCACCCTC
CGGGATCGATTGGTAGGCCCCACGCAGCTCCTTTTCCAAGCCATTCAGGC
CGCTTTGGACGAGCACACGGGACTCGTGAACGGATTGGCTGAGATCATGG
ATGTTCGCCCCCCTCCTCGGGATTTCAGGGTGATCCTCCAACGCCTCCAG
GCAGTCCTGGAATCGTCGGCCTCCCACGCCCAGGCCGATGTGGAAATGGC
GCGAAGACGAAGAGAAGAAGCGTGGGGGGAGGAAAAAGCAAGGTACCTGG
CACGCATAGCGGCCGTGGAAGGCGAATGCCGTGCGCTGGAGGAGGCCAGC
GCGGCAAGCGTCTCAGCCGCCCACCGGGAGAAGCAGAGAGAGTCGGGGGA
AGACCGCGGCCAATCCCATGCCTTGGAAAACACCCTGGCCCTGGCGGAAG
GGATGAAGGGAGAAGAGGCAGCACAGGGGGAAAAGAAGAGCCCGTCCACC
GGCCCAGGCCGGGAGGGGGAGGCGGAGGAGCTGCGACGGCGTTGTTTTCA
GCTCGAGGCGGAGCTGGAGGGCTGGAAGGGGGGGGAGCCGAAGGAAGTGA
CGGACCTCCGGAACGAGACCGAGGAATTGCGGCGCCGGTGCCAGATGTTG
GAAGCGGAGTCGGCCAGTCTCCGTGCAAGGGATTCTGGGAGCGAGAGGAA
CCGCACCAGCAGTGGGCACACCCCCGGTTCGATCCCTGCGACAACCCCCC
CCTCCAGGGTGTCGGACGGCGAGGCACTGGCCCAGGAACTAGAGGAGGCC
AGGAGGGAGGCCATGGAGTGGGAGGCGGCGGCGGAAGCTCGGGCTTTGGA
GTTGAAACATGTGCGGGAGAGGGTGATGGTCTTGGAGAAGGAGCAGAAAA
CGGCGGAGGCGCAGCAGCAGGAGGCGTTGCGGGTGACCCGGGCGACAACC
GAGGCGGAACTGGGGCATCTGCGCGCGGAACTCGACCGGCTGCGGGGAAG
GCAAGGCGAAGGGGAGGAGGAGGAGGCCCGGTCAGAGGAGCGGAACCGGT
GGACAAGGGAGATTCAACGCCTGGAGCACGCCTTGGCAGAGGAGAAGCAA
AAGAAAACCCTTACCCATGCCGGTTCCCTGTCCGAGTCGGAGCTTTCCAA
GCGGCTGGCGGAGGCGGCTGGGAAATTGCGTGGGAAAGAGCACGAAATGG
GCCAGCTCCGGGTCGTCATCGAGCAGCAACGGGAACTGGTCAAGGCGAAG
GCGCATGAATTGGAGCGGGCCCGCAGGGAAGGGGAGGCGCACCTCCGGCG
GTTGGAGGCGGCGGAGGAAATGGTGAAAGGCCTCGTGGAGGAGAAAGACC
GGCATCTGCACGCCCTCCGGGCGGCCGACGCCCGGGCCCAGGAGGCCGAC
TTGGAGGCGCTGCGGGAGGAGGTGGCGGTCTGGAAGGCCCGCGTGGCCAC
CATGGAGGCCAATGCCGTGCGACAAGAGGAGGAGTCCGAGAACAAAGTGA
GGGGGTTGTTGGAGCGCCTGCAGGCTGCGGAGCATGCCGTCCATGAACAA
GGGGCGGAGCTGGCGGGCACCCGGGCGGACTTGGGTGTCCTGACTCGGGA
CTTCGAACAGAGCGAGACAGCCAAGGCGAATTTGCAGAAGGTGTTGGAAC
AATTTCAGCGTGAAAAAGCCGCGGAAATGAAGCACTGGGAGAGGACGCAC
GCGAAACAACTGGCGGCGGAGGCAGCGGCGGCGGAGACGCGTGAGGCCCA
TTTGCGTACCTCCTTCCAAGCTCAGATCGCTGACGCCCAGGCACAAGCCA
CTCTCAGCGTGGAGGAATCGGAGCGGGAGACACGCAAAGCCCTAGCGGAG
TGTCAGCAAGCACGGCGGGAAGCGGCCTCGATGCGGAAGGCCCTGGACGA
GGCCATTGCCCGGCTGCATTCCAACGAGTCCGACGTGGTCCCGAGGCAGT
TGATTGGGAACCTGGTGGTGTCCTACTACAGCCAGGGCAGGCCCACGGAG
ACCCTGGAAATCATCGCACGGACCTTGGGGCTTGCAGACGAAGAGCGGAT
AAAAGTCGGTTTGAGGGCTTTGCGGCCAGGAGGGGGTAGGCGGGCGGGGG
TGGGGGAAGGGGGGGGGGCGGGCAGCCCGGGGAAAAGGGGGTTGGTAGGA
GGGTTGTTCTCAAGGGTGGGAGGGGTCATGAGTTCTCCGCGCAAGGAATT
CGTACCCGAGAACGGCACAGAAGGGAAGACGTTGGGGGACCTATGGCTGG
ATTACCTGATGAAGGAGACGGAGGAGGAAGTGGAAGAGGGGGAGGAGGAG
GAGGAGGAGGAGGATGGAGGGGAGGACCAGGAGGAGAAAGAGATCGCACC
ACCAGATCTGGTGTCCCTCGAGGCTCCTGTTTTGACGTCGGTGGGGAACA
AAGAGAGGGAAGGGAAGCCGCCAGGCATGGGAGAGTCGAAGGCCCTCCAA
GAAGAGGAGGGAGACGGGACTGGAGGGGTGATTGAGAGCAAGGTGCACCC
TCCCTCCTAGCACGCCTAAAGCTCGCCCTTCTTAAGACAATGTGTGTGTA
ATAAAGTCATTCTGAACAAAGAGGAAGGAAGGACAATGCCGCGATCGGCC
AAGCGGTCGAGGTGGTGT

protein sequence of rna9816

>rna9816-protein ID=rna9816-protein|Name=rna9816|organism=Nannochloropsis gaditana|type=polypeptide|length=402bp
MADEPVSVSSPTSSGPGTMRTKYTEASLSSSHFSAKEIPAVEGRDDVEEE
EFFEAENDVNVVEDIGAEDLSEQFEELRVVPEEERDAEKARGLKEEGNTC
YQAQDFQGAAECYGLAIKFCPYQYDKEKELAEARRRAWAAQEEEERARKS
GEENVATPETGGSGVSGATAPSGTGGKEGTTGSCGGSHQADATRAEEEKE
PFAEFKEECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRR
AQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKT
ETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQKQSGVGKGLF
VLNDIIVPGVMWNISGTAASLCLLDFGSQVFSAFTSKHSFTSHHVHLIEM
LN

mRNA from alignment at KK037256.1:176220..177564-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9816 ID=rna9816|Name=rna9816|organism=Nannochloropsis gaditana|type=mRNA|length=1345bp|location=Sequence derived from alignment at KK037256.1:176220..177564- (Nannochloropsis gaditana)
ATGGCAGACGAGCCTGTGTCGGTGTCCTCGCCCACATCCTCGGGCCCGGG
CACGATGAGGACCAAATACACAGAAGCGTCCCTTTCTTCCTCTCATTTTT
CCGCAAAAGAGATACCAGCTGTAGAGGGACGTGATGATGTGGAGGAGGAA
GAATTTTTTGAAGCCGAAAATGACGTGAATGTAGTGGAGGACATCGGGGC
GGAGGACCTGTCGGAGCAATTTGAAGAACTGCGGGTGGTGCCAGAAGAGG
AACGAGACGCAGAGAAAGCACGGGGCTTGAAGGAGGAGGGTAACACCTGC
TACCAAGCGCAGGATTTCCAGGGGGCCGCAGAGTGCTACGGTCTTGCCAT
CAAATTCTGCCCATACCAGTACGACAAGGAGAAAGAATTGGCAGAGGCAC
GTCGACGGGCCTGGGCCGCCCAAGAAGAAGAGGAAAGGGCGCGAAAGAGT
GGGGAAGAGAACGTCGCGACGCCCGAGACAGGAGGCAGCGGAGTGTCCGG
GGCCACGGCACCCTCTGGAACGGGAGGGAAGGAGGGGACTACCGGGTCCT
GTGGGGGCTCCCATCAGGCGGACGCAACGCGCGCGGAGGAGGAAAAAGAA
CCGTTTGCCGAGTTTAAGGAGGAGTGTGCCGTGTACTACTGCAACCGGGC
AGCATGCTGGGTCCATCTGGGGCGGGACCAAGAGGTGGTGGAGGACTGCA
GTGTCGCCCTCAAGCTTAAATCCGGGTATGCAAAAGCGTTGATGCGCCGG
GCCCAGGCCTCCGAGCGTCTGGACAAGCTGGAGGACGCCCTGAAAGATTA
CAAGGAGGTGCTGGCCTTGGACCCGGGGAACCGCGTGGTCCGCGCCAAGA
TGCCTGGGTTGGAAAAAGAATGTGCCGCGCGCATGGAGAAGCTCAAGACG
GAGACGATAGGGAAACTGAAGGATCTGGGCAACAGCGTCCTGAGTAATTT
TGGACTGAGTTTGGACAATTTTAAGATGCAGCAGGACCCCAACACGGGCT
CCTACAGCTTCAGCTTTCAAAAGTAAATAGAGAGGGTGGAGGGTGGGGTT
GGGATTGGGGGGTAAACGGTGGGGGAAAGCACGCGGAAAGGGCTAGAAGG
AAAGCGGTCGATAGATGTAGGAAAAGATTTAGGAAGGACGGAAAATACCA
TGAGATAGGCAAAGTGGAGTGGGAAAGGGCCTGTTTGTTCTTAACGACAT
AATCGTGCCAGGTGTTATGTGGAATATCTCGGGAACGGCAGCATCCCTCT
GTCTGTTGGATTTTGGATCTCAGGTCTTTAGCGCTTTCACGTCGAAGCAT
TCTTTCACTTCTCATCATGTACATCTTATTGAAATGTTGAATTAA

Coding sequence (CDS) from alignment at KK037256.1:176220..177564-

>rna9816 ID=rna9816|Name=rna9816|organism=Nannochloropsis gaditana|type=CDS|length=2418bp|location=Sequence derived from alignment at KK037256.1:176220..177564- (Nannochloropsis gaditana)
GCAAAGTGGAGTGGGAAAGGGCCTGTTTGTTCTTAACGACATAATCGTGC
CAGGTGTTATGTGGAATATCTCGGGAACGGCAGCATCCCTCTGTCTGTTG
GATTTTGGATCTCAGGTCTTTAGCGCTTTCACGTCGAAGCATTCTTTCAC
TTCTCATCATGTACATCTTATTGAAATGTTGAATTAAATGGCAGACGAGC
CTGTGTCGGTGTCCTCGCCCACATCCTCGGGCCCGGGCACGATGAGGACC
AAATACACAGAAGCGTCCCTTTCTTCCTCTCATTTTTCCGCAAAAGAGAT
ACCAGCTGTAGAGGGACGTGATGATGTGGAGGAGGAAGAATTTTTTGAAG
CCGAAAATGACGTGAATGTAGTGGAGGACATCGGGGCGGAGGACCTGTCG
GAGCAATTTGAAGAACTGCGGGTGGTGCCAGAAGAGGAACGAGACGCAGA
GAAAGCACGGGGCTTGAAGGAGGAGGGTAACACCTGCTACCAAGCGCAGG
ATTTCCAGGGGGCCGCAGAGTGCTACGGTCTTGCCATCAAATTCTGCCCA
TACCAGTACGACAAGGAGAAAGAATTGGCAGAGGCACGTCGACGGGCCTG
GGCCGCCCAAGAAGAAGAGGAAAGGGCGCGAAAGAGTGGGGAAGAGAACG
TCGCGACGCCCGAGACAGGAGGCAGCGGAGTGTCCGGGGCCACGGCACCC
TCTGGAACGGGAGGGAAGGAGGGGACTACCGGGTCCTGTGGGGGCTCCCA
TCAGGCGGACGCAACGCGCGCGGAGGAGGAAAAAGAACCGTTTGCCGAGT
TTAAGGAGGAGTGTGCCGTGTACTACTGCAACCGGGCAGCATGCTGGGTC
CATCTGGGGCGGGACCAAGAGGTGGTGGAGGACTGCAGTGTCGCCCTCAA
GCTTAAATCCGGGTATGCAAAAGCGTTGATGCGCCGGGCCCAGGCCTCCG
AGCGTCTGGACAAGCTGGAGGACGCCCTGAAAGATTACAAGGAGGTGCTG
GCCTTGGACCCGGGGAACCGCGTGGTCCGCGCCAAGATGCCTGGGTTGGA
AAAAGAATGTGCCGCGCGCATGGAGAAGCTCAAGACGGAGACGATAGGGA
AACTGAAGGATCTGGGCAACAGCGTCCTGAGTAATTTTGGACTGAGTTTG
GACAATTTTAAGATGCAGCAGGACCCCAACACGGGCTCCTACAGCTTCAG
CTTTCAAAAGCAAAGTGGAGTGGGAAAGGGCCTGTTTGTTCTTAACGACA
TAATCGTGCCAGGTGTTATGTGGAATATCTCGGGAACGGCAGCATCCCTC
TGTCTGTTGGATTTTGGATCTCAGGTCTTTAGCGCTTTCACGTCGAAGCA
TTCTTTCACTTCTCATCATGTACATCTTATTGAAATGTTGAATTAAATGG
CAGACGAGCCTGTGTCGGTGTCCTCGCCCACATCCTCGGGCCCGGGCACG
ATGAGGACCAAATACACAGAAGCGTCCCTTTCTTCCTCTCATTTTTCCGC
AAAAGAGATACCAGCTGTAGAGGGACGTGATGATGTGGAGGAGGAAGAAT
TTTTTGAAGCCGAAAATGACGTGAATGTAGTGGAGGACATCGGGGCGGAG
GACCTGTCGGAGCAATTTGAAGAACTGCGGGTGGTGCCAGAAGAGGAACG
AGACGCAGAGAAAGCACGGGGCTTGAAGGAGGAGGGTAACACCTGCTACC
AAGCGCAGGATTTCCAGGGGGCCGCAGAGTGCTACGGTCTTGCCATCAAA
TTCTGCCCATACCAGTACGACAAGGAGAAAGAATTGGCAGAGGCACGTCG
ACGGGCCTGGGCCGCCCAAGAAGAAGAGGAAAGGGCGCGAAAGAGTGGGG
AAGAGAACGTCGCGACGCCCGAGACAGGAGGCAGCGGAGTGTCCGGGGCC
ACGGCACCCTCTGGAACGGGAGGGAAGGAGGGGACTACCGGGTCCTGTGG
GGGCTCCCATCAGGCGGACGCAACGCGCGCGGAGGAGGAAAAAGAACCGT
TTGCCGAGTTTAAGGAGGAGTGTGCCGTGTACTACTGCAACCGGGCAGCA
TGCTGGGTCCATCTGGGGCGGGACCAAGAGGTGGTGGAGGACTGCAGTGT
CGCCCTCAAGCTTAAATCCGGGTATGCAAAAGCGTTGATGCGCCGGGCCC
AGGCCTCCGAGCGTCTGGACAAGCTGGAGGACGCCCTGAAAGATTACAAG
GAGGTGCTGGCCTTGGACCCGGGGAACCGCGTGGTCCGCGCCAAGATGCC
TGGGTTGGAAAAAGAATGTGCCGCGCGCATGGAGAAGCTCAAGACGGAGA
CGATAGGGAAACTGAAGGATCTGGGCAACAGCGTCCTGAGTAATTTTGGA
CTGAGTTTGGACAATTTTAAGATGCAGCAGGACCCCAACACGGGCTCCTA
CAGCTTCAGCTTTCAAAA

Synonyms

Publications