EWM20893.1, cds9785 (CDS) Nannochloropsis gaditana

Overview
NameEWM20893.1
Unique Namecds9785
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:176543..177564 -
Alignment locationKK037256.1:176220..176406 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20893.1
ProductTetratricopeptide TPR-1
Orig transcript idgnl|cribi|Naga_100201g9.6918.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:176543..177564 -
KK037256.1supercontigKK037256.1:176220..176406 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR013105TPR_2
IPR001440TPR_1
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|585100844|gb|EWM20893.1| (Tetratricopeptide TPR-1 [Nannochloropsis gaditana])

HSP 1 Score: 829.706 bits (2142), Expect = 0.000e+0
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0
Query:    1 MADEPVSVSSPTSSGPGTMRTKYTEASLSSSHFSAKEIPAVEGRDDVEEEEFFEAENDVNVVEDIGAEDLSEQFEELRVVPEEERDAEKARGLKEEGNTCYQAQDFQGAAECYGLAIKFCPYQYDKEKELAEARRRAWAAQEEEERARKSGEENVATPETGGSGVSGATAPSGTGGKEGTTGSCGGSHQADATRAEEEKEPFAEFKEECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQKQSGVGKGLFVLNDIIVPGVMWNISGTAASLCLLDFGSQVFSAFTSKHSFTSHHVHLIEMLN 402
            MADEPVSVSSPTSSGPGTMRTKYTEASLSSSHFSAKEIPAVEGRDDVEEEEFFEAENDVNVVEDIGAEDLSEQFEELRVVPEEERDAEKARGLKEEGNTCYQAQDFQGAAECYGLAIKFCPYQYDKEKELAEARRRAWAAQEEEERARKSGEENVATPETGGSGVSGATAPSGTGGKEGTTGSCGGSHQADATRAEEEKEPFAEFKEECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQKQSGVGKGLFVLNDIIVPGVMWNISGTAASLCLLDFGSQVFSAFTSKHSFTSHHVHLIEMLN
Sbjct:    1 MADEPVSVSSPTSSGPGTMRTKYTEASLSSSHFSAKEIPAVEGRDDVEEEEFFEAENDVNVVEDIGAEDLSEQFEELRVVPEEERDAEKARGLKEEGNTCYQAQDFQGAAECYGLAIKFCPYQYDKEKELAEARRRAWAAQEEEERARKSGEENVATPETGGSGVSGATAPSGTGGKEGTTGSCGGSHQADATRAEEEKEPFAEFKEECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQKQSGVGKGLFVLNDIIVPGVMWNISGTAASLCLLDFGSQVFSAFTSKHSFTSHHVHLIEMLN 402          
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|553190068|ref|XP_005855119.1| (hypothetical protein NGA_0094500 [Nannochloropsis gaditana CCMP526] >gi|422293938|gb|EKU21238.1| hypothetical protein NGA_0094500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0
Identity = 339/341 (99.41%), Postives = 341/341 (100.00%), Query Frame = 0
Query:    1 MADEPVSVSSPTSSGPGTMRTKYTEASLSSSHFSAKEIPAVEGRDDVEEEEFFEAENDVNVVEDIGAEDLSEQFEELRVVPEEERDAEKARGLKEEGNTCYQAQDFQGAAECYGLAIKFCPYQYDKEKELAEARRRAWAAQEEEERARKSGEENVATPETGGSGVSGATAPSGTGGKEGTTGSCGGSHQADATRAEEEKEPFAEFKEECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341
            MADEPVSVSSPTSSGPGTMRTKYTEASLSSSHFSAKEIPAVEGRDDVEEEEFFEAENDVNVVEDIGAEDLSEQFEELRVVPEEERDAEKARGLKE+GNTCYQAQDFQGAAECYGLAIKFCPYQYDKEKELAEARRRAWAAQEEEERARKSGEENVATPETGGSGVSGATAPSGTGGKEGTTGSCGGSHQADATRAEEEKEPFAEFKEECAVYYCNRAACWVHLGRD+EVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK
Sbjct:    1 MADEPVSVSSPTSSGPGTMRTKYTEASLSSSHFSAKEIPAVEGRDDVEEEEFFEAENDVNVVEDIGAEDLSEQFEELRVVPEEERDAEKARGLKEKGNTCYQAQDFQGAAECYGLAIKFCPYQYDKEKELAEARRRAWAAQEEEERARKSGEENVATPETGGSGVSGATAPSGTGGKEGTTGSCGGSHQADATRAEEEKEPFAEFKEECAVYYCNRAACWVHLGRDREVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341          
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|397637571|gb|EJK72724.1| (hypothetical protein THAOC_05716 [Thalassiosira oceanica])

HSP 1 Score: 157.532 bits (397), Expect = 1.942e-41
Identity = 98/251 (39.04%), Postives = 130/251 (51.79%), Query Frame = 0
Query:   93 LKEEGNTCYQAQDFQGAAECYGLAIKFCPY--QYDKEKELAEARRRAWAAQEEEERARKSGEENVATPETGGSGVSGATAPSGTGGKEGTTGSCGGSHQADATRAEEEKEPFAEFKEECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341
            LK  GN  ++  ++  A + Y  AI+ CPY   +    E     R A+     EER R   E+ +A           A +P+G G +E      G + + +         P   F  + AVY+ NRAAC +HLG   E + DC +AL     Y KA MRR  A ER++  E AL+D      LDP N+  R +M  L K    RM+KLK ET+GKLKDLGNS+L NFG+SLDNF   QDP TG YS S+ +
Sbjct:   63 LKALGNGDFKQGNYLDAIDHYTDAIEACPYGETHGPSGEEILQMRDAF-----EERNR---EKMLAIQRKEMEDRRKARSPAGKGNEEDKADDGGETDEGEEDPLPTFVPPRHVFGTKLAVYHANRAACNLHLGHYAETIRDCDIALLFNPTYVKAYMRRGTAHERVEDTEKALRDVTTAFELDPTNKPARRQMERLRKLEDERMQKLKDETMGKLKDLGNSILGNFGMSLDNFSAVQDPKTGGYSISYNQ 305          
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|223996855|ref|XP_002288101.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220977217|gb|EED95544.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 150.214 bits (378), Expect = 1.062e-40
Identity = 73/133 (54.89%), Postives = 90/133 (67.67%), Query Frame = 0
Query:  205 FKEECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSF 337
            +  + AVY+ NRAA  +HLGR+ E +EDC +AL L   Y KAL+RR  A+ER++  E ALKD K  L L+P N   +  +  L+K    RMEKLK ET+GKLKDLGNS+L NFGLSLDNF   QDP TG YS 
Sbjct:    3 YSTKLAVYHANRAATLLHLGRNSEAIEDCDIALLLNPTYVKALLRRCTANERVENTEQALKDAKAALLLEPNNTAAKKTVIRLQKVEEERMEKLKEETMGKLKDLGNSILGNFGLSLDNFNAVQDPKTGGYSI 135          
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|919063875|ref|XP_013413539.1| (PREDICTED: tetratricopeptide repeat protein 1-like [Lingula anatina])

HSP 1 Score: 152.525 bits (384), Expect = 1.102e-39
Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = 0
Query:  205 FKEECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQKQS 343
            F++E A+ Y NRAAC +HL + ++ +EDC+ AL+L   Y KAL+RRA+  E+ +KL++AL+DYK+V+ +DP     R     L ++   R EK+K E IGKLK+LGN VL  FG+S DNFK+QQDPNTGSYS  FQ+ +
Sbjct:  150 FQKERAIMYSNRAACRLHLKQYEKAIEDCTKALELNPNYLKALLRRAEMYEKTEKLDEALEDYKKVIEMDPTQHTAREACIRLPQQITERNEKMKDEMIGKLKELGNMVLKPFGMSTDNFKLQQDPNTGSYSVQFQQNA 288          
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|1133452588|ref|XP_019864402.1| (PREDICTED: tetratricopeptide repeat protein 1-like isoform X2 [Amphimedon queenslandica])

HSP 1 Score: 150.984 bits (380), Expect = 2.554e-39
Identity = 70/135 (51.85%), Postives = 100/135 (74.07%), Query Frame = 0
Query:  207 EECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341
            +E +V + NRAAC++ LG+ +EVVEDC+ AL+LK  Y KAL+RR Q+ E L++L++AL+DYK+VL ++P   + RA    L ++   + E+LK E  GKLK+LG++VL  FGLS  NFK++QDPNTG YS +FQK
Sbjct:  140 QEVSVCHSNRAACYLKLGKHEEVVEDCTKALELKPDYLKALIRRGQSYEALERLDEALEDYKKVLEIEPHQPIARAAALRLPQQITEQHERLKAEMFGKLKELGDAVLKPFGLSTSNFKLEQDPNTGGYSVNFQK 274          
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|340370734|ref|XP_003383901.1| (PREDICTED: tetratricopeptide repeat protein 1-like isoform X1 [Amphimedon queenslandica])

HSP 1 Score: 150.984 bits (380), Expect = 3.100e-39
Identity = 70/135 (51.85%), Postives = 100/135 (74.07%), Query Frame = 0
Query:  207 EECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341
            +E +V + NRAAC++ LG+ +EVVEDC+ AL+LK  Y KAL+RR Q+ E L++L++AL+DYK+VL ++P   + RA    L ++   + E+LK E  GKLK+LG++VL  FGLS  NFK++QDPNTG YS +FQK
Sbjct:  143 QEVSVCHSNRAACYLKLGKHEEVVEDCTKALELKPDYLKALIRRGQSYEALERLDEALEDYKKVLEIEPHQPIARAAALRLPQQITEQHERLKAEMFGKLKELGDAVLKPFGLSTSNFKLEQDPNTGGYSVNFQK 277          
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|219116456|ref|XP_002179023.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409790|gb|EEC49721.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 146.747 bits (369), Expect = 3.159e-39
Identity = 71/134 (52.99%), Postives = 96/134 (71.64%), Query Frame = 0
Query:  210 AVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLD-KLEDA-LKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341
            A YYCNRAA  +H+ R    +EDC++A+ L   Y KA +RR+ A E+L  +L+ + L+D ++ L LDP N  +R+ +  L+K   AR+EKLK ET+ KLKDLGNS+L NFGLSLDNF+ Q+DPNTGSYS SF +
Sbjct:   13 ATYYCNRAAALLHMERYDHAIEDCNLAIILNPAYVKAYIRRSTAYEQLQHQLQHSTLQDAQQALQLDPSNAQIRSTVARLQKLEDARLEKLKVETMDKLKDLGNSILGNFGLSLDNFQTQKDPNTGSYSISFNQ 146          
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|769801282|ref|XP_011626633.1| (tetratricopeptide repeat protein 1 isoform X2 [Amborella trichopoda])

HSP 1 Score: 150.214 bits (378), Expect = 3.476e-39
Identity = 70/132 (53.03%), Postives = 94/132 (71.21%), Query Frame = 0
Query:  210 AVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341
            ++ + NRA C+  LGRD E V++C+ ALKL   Y KAL+RRA+A+E+L+  E+A+ D K +L LDP N   R  +  LE   A + EK+K E IGKLKDLGNS+L  FG+S+DNFK  +DPNTGSYS +FQ+
Sbjct:  121 SMCHANRAVCFSKLGRDTETVKECTEALKLNPTYVKALLRRAEANEKLENFEEAIADRKRILELDPANEQSRRAIGRLEPLAAEKREKMKEEMIGKLKDLGNSILGRFGMSVDNFKAVKDPNTGSYSINFQR 252          
BLAST of EWM20893.1 vs. NCBI_GenBank
Match: gi|1173115524|ref|XP_020528474.1| (tetratricopeptide repeat protein 1 isoform X1 [Amborella trichopoda])

HSP 1 Score: 149.828 bits (377), Expect = 4.139e-39
Identity = 70/132 (53.03%), Postives = 94/132 (71.21%), Query Frame = 0
Query:  210 AVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341
            ++ + NRA C+  LGRD E V++C+ ALKL   Y KAL+RRA+A+E+L+  E+A+ D K +L LDP N   R  +  LE   A + EK+K E IGKLKDLGNS+L  FG+S+DNFK  +DPNTGSYS +FQ+
Sbjct:  122 SMCHANRAVCFSKLGRDTETVKECTEALKLNPTYVKALLRRAEANEKLENFEEAIADRKRILELDPANEQSRRAIGRLEPLAAEKREKMKEEMIGKLKDLGNSILGRFGMSVDNFKAVKDPNTGSYSINFQR 253          
The following BLAST results are available for this feature:
BLAST of EWM20893.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100844|gb|EWM20893.1|0.000e+0100.00Tetratricopeptide TPR-1 [Nannochloropsis gaditana][more]
gi|553190068|ref|XP_005855119.1|0.000e+099.41hypothetical protein NGA_0094500 [Nannochloropsis ... [more]
gi|397637571|gb|EJK72724.1|1.942e-4139.04hypothetical protein THAOC_05716 [Thalassiosira oc... [more]
gi|223996855|ref|XP_002288101.1|1.062e-4054.89predicted protein, partial [Thalassiosira pseudona... [more]
gi|919063875|ref|XP_013413539.1|1.102e-3951.08PREDICTED: tetratricopeptide repeat protein 1-like... [more]
gi|1133452588|ref|XP_019864402.1|2.554e-3951.85PREDICTED: tetratricopeptide repeat protein 1-like... [more]
gi|340370734|ref|XP_003383901.1|3.100e-3951.85PREDICTED: tetratricopeptide repeat protein 1-like... [more]
gi|219116456|ref|XP_002179023.1|3.159e-3952.99predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|769801282|ref|XP_011626633.1|3.476e-3953.03tetratricopeptide repeat protein 1 isoform X2 [Amb... [more]
gi|1173115524|ref|XP_020528474.1|4.139e-3953.03tetratricopeptide repeat protein 1 isoform X1 [Amb... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9816rna9816Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications