rna9815, rna9815 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9815
Unique Name	rna9815
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1504
Alignment location	KK037256.1:172294..175011 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100201g8.6916.mrna
Orig protein id	gnl\|cribi\|Naga_100201g8.6916
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:172294..175011 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100201g8	gene9530	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20891.1	cds9784	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9815	rna9815-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:172294..175011-
coding sequence from alignment at KK037256.1:172294..175011-

mRNA sequence

>rna9815 ID=rna9815|Name=rna9815|organism=Nannochloropsis gaditana|type=mRNA|length=1504bp
TGTCTAGCGACCCTTAGGAGGGGTTTGACTTGACCTTAACGCATAAAGGT
GATGGAAAACCGCACTCTGCCGAGCTTTCCAATTGAAGTTCTTCCTTCCT
TGCTTCCTTACACTTGCGTTCCCAATGGGCCGCGATCGCGCTAAGTTTTT
ATGCGAACAAGTTGATCGAGGATATTTCGAGTACTTTCAGATGAAGGGTG
GTCTTCCCTCAGTATGGTATTTGGCTTGCGTGACAAAATTGGGTAGACAG
GGGGTAACGGGTCGGGTTTCGACACCACTGACGCAAGTCCTCTTACCTAC
TTGGCCCCCAATGGCAACTCACATGGGGTCTACCAACCATTTACAAGGCA
CACCGTCGATGGCGCAACTTCTTCTCGCCTACAAAAACACTCTTCAGGGT
CTCTCAGTCTTGCAGGCTTCGGGGGCATTTGTTTACTGCCTAGCCCTGTT
CCTGGCAGGCGCCTGGACGACGAAGCAGGTTTGGTTTTCTTTTCCTTCGG
GAATCGAAGACGTACACTCCATACCTTGGGAGCTCTTATGTGTGGCAAAT
GAGATAGCCGGGCGTAAGTGCATCGTAGCTGTAGGTGGACATGTGAGCCA
GGGCCGATATCTTCTGGCAATAGGGTGGTCAAGTGTAGGGATCATCAGCA
TAGGCCAGGTCGCCGTGGGTCTCCTAAGCCTAGGATGGCTCGCATGTGGC
GCAATCATCGCTGTGGGAGTATCCGCTTTGGCCTGTCCGGGAATAGTCTA
TGGCCTGGTGGTCTTTGGTGGGCTCAGTCCCCATTGCATAGTCGGTTTCA
CCGTGATGAAGACTCCACTCGCCAAGGGCGTGCTCAACCTCTCCCCGCTG
CCCCTCTCGGGCCTACGTAACCTGGAGCCCTATGGCAGCGGCATTTCAAA
AGCATGCCCTAAGAAAGCGAAAGAATCGCCGCGGCTCTGGGAAGATGGCA
AGTACGACGAGGAGGGATGTATCCTCCATCAGGAGGCGCCACATTTGCGC
CAACAGCAGGATACTCACCCACACCGAGGGGGAGTTCCACCACAACACGC
GCCGGATAATGAGATATATGAACGGCACGCTGGATATCGCCCTATCCGCT
TCGCACGGGGCGCCTGAACAGAGGACGAAAAGCGGGGTCTGGTGTTTCAA
CTGATGGAAGTGAAAGCATTTATCATCCTAGGTTCTGAAGTGGGCCTGAT
TTTAAAACTTGTGTGAATTTCGGCAGATTACAGGTAGCCTGGCTGTGTAC
AATGAGACCTCGTGTAGACTCTGAAGATACGAAAGGGGTACACTACTTTT
GGTTCCTACACTCACCGCTTGCAGGCGGTGGCGACACTCTGATTGCAGAG
ACGCGTTGTCTCAGGAAGATGGGCCAAAATTGGATTGCCTTTCATCTCAC
ATCGTGTCCATTTCCGATTCGTCGCATGCCCCGACCATTTTAAGAGGGGC
GCGAATGCAAAAGGCAACACAGCAAAGCGAGGCGAACACTGAAGACACCA
CCTC

protein sequence of rna9815

>rna9815-protein ID=rna9815-protein|Name=rna9815|organism=Nannochloropsis gaditana|type=polypeptide|length=787bp
MDVRPPPRDFRVILQRLQAVLESSASHAQADVEMARRRREEAWGEEKARY
LARIAAVEGECRALEEASAASVSAAHREKQRESGEDRGQSHALENTLALA
EGMKGEEAAQGEKKSPSTGPGREGEAEELRRRCFQLEAELEGWKGGEPKE
VTDLRNETEELRRRCQMLEAESASLRARDSGSERNRTSSGHTPGSIPATT
PPSRVSDGEALAQELEEARREAMEWEAAAEARALELKHVRERVMVLEKEQ
KTAEAQQQEALRVTRATTEAELGHLRAELDRLRGRQGEGEEEEARSEERN
RWTREIQRLEHALAEEKQKKTLTHAGSLSESELSKRLAEAAGKLRGKEHE
MGQLRVVIEQQRELVKAKAHELERARREGEAHLRRLEAAEEMVKGLVEEK
DRHLHALRAADARAQEADLEALREEVAVWKARVATMEANAVRQEEESENK
VRGLLERLQAAEHAVHEQGAELAGTRADLGVLTRDFEQSETAKANLQKVL
EQFQREKAAEMKHWERTHAKQLAAEAAAAETREAHLRTSFQAQIADAQAQ
ATLSVEESERETRKALAECQQARREAASMRKALDEAIARLHSNESDVVPR
QLIGNLVVSYYSQGRPTETLEIIARTLGLADEERIKVGLRALRPGGGRRA
GVGEGGGAGSPGKRGLVGGLFSRVGGVMSSPRKEFVPENGTEGKTLGDLW
LDYLMKETEEEVEEGEEEEEEEDGGEDQEEKEIAPPDLVSLEAPVLTSVG
NKEREGKPPGMGESKALQEEEGDGTGGVIESKVHPPS

mRNA from alignment at KK037256.1:172294..175011-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9815 ID=rna9815|Name=rna9815|organism=Nannochloropsis gaditana|type=mRNA|length=2718bp|location=Sequence derived from alignment at KK037256.1:172294..175011- (Nannochloropsis gaditana)
GGAGGAAGTGGGCGCTTTGATCGGGAACCGCGACGTGCACGAACATTTGC
TCCAAGACGTGACGCGCTGGAAAGAGGCGGCGGCCTCCCCGCTCCCCCAA
ATGCCCCCGCCTTCGGCCCCGGATACCGCCTCCCCCCCCCGGCCACCCTC
CGGGATCGATTGGTAGGCCCCACGCAGCTCCTTTTCCAAGCCATTCAGGC
CGCTTTGGACGAGCACACGGGACTCGTGAACGGATTGGCTGAGATCATGG
ATGTTCGCCCCCCTCCTCGGGATTTCAGGGTGATCCTCCAACGCCTCCAG
GCAGTCCTGGAATCGTCGGCCTCCCACGCCCAGGCCGATGTGGAAATGGC
GCGAAGACGAAGAGAAGAAGCGTGGGGGGAGGAAAAAGCAAGGTACCTGG
CACGCATAGCGGCCGTGGAAGGCGAATGCCGTGCGCTGGAGGAGGCCAGC
GCGGCAAGCGTCTCAGCCGCCCACCGGGAGAAGCAGAGAGAGTCGGGGGA
AGACCGCGGCCAATCCCATGCCTTGGAAAACACCCTGGCCCTGGCGGAAG
GGATGAAGGGAGAAGAGGCAGCACAGGGGGAAAAGAAGAGCCCGTCCACC
GGCCCAGGCCGGGAGGGGGAGGCGGAGGAGCTGCGACGGCGTTGTTTTCA
GCTCGAGGCGGAGCTGGAGGGCTGGAAGGGGGGGGAGCCGAAGGAAGTGA
CGGACCTCCGGAACGAGACCGAGGAATTGCGGCGCCGGTGCCAGATGTTG
GAAGCGGAGTCGGCCAGTCTCCGTGCAAGGGATTCTGGGAGCGAGAGGAA
CCGCACCAGCAGTGGGCACACCCCCGGTTCGATCCCTGCGACAACCCCCC
CCTCCAGGGTGTCGGACGGCGAGGCACTGGCCCAGGAACTAGAGGAGGCC
AGGAGGGAGGCCATGGAGTGGGAGGCGGCGGCGGAAGCTCGGGCTTTGGA
GTTGAAACATGTGCGGGAGAGGGTGATGGTCTTGGAGAAGGAGCAGAAAA
CGGCGGAGGCGCAGCAGCAGGAGGCGTTGCGGGTGACCCGGGCGACAACC
GAGGCGGAACTGGGGCATCTGCGCGCGGAACTCGACCGGCTGCGGGGAAG
GCAAGGCGAAGGGGAGGAGGAGGAGGCCCGGTCAGAGGAGCGGAACCGGT
GGACAAGGGAGATTCAACGCCTGGAGCACGCCTTGGCAGAGGAGAAGCAA
AAGAAAACCCTTACCCATGCCGGTTCCCTGTCCGAGTCGGAGCTTTCCAA
GCGGCTGGCGGAGGCGGCTGGGAAATTGCGTGGGAAAGAGCACGAAATGG
GCCAGCTCCGGGTCGTCATCGAGCAGCAACGGGAACTGGTCAAGGCGAAG
GCGCATGAATTGGAGCGGGCCCGCAGGGAAGGGGAGGCGCACCTCCGGCG
GTTGGAGGCGGCGGAGGAAATGGTGAAAGGCCTCGTGGAGGAGAAAGACC
GGCATCTGCACGCCCTCCGGGCGGCCGACGCCCGGGCCCAGGAGGCCGAC
TTGGAGGCGCTGCGGGAGGAGGTGGCGGTCTGGAAGGCCCGCGTGGCCAC
CATGGAGGCCAATGCCGTGCGACAAGAGGAGGAGTCCGAGAACAAAGTGA
GGGGGTTGTTGGAGCGCCTGCAGGCTGCGGAGCATGCCGTCCATGAACAA
GGGGCGGAGCTGGCGGGCACCCGGGCGGACTTGGGTGTCCTGACTCGGGA
CTTCGAACAGAGCGAGACAGCCAAGGCGAATTTGCAGAAGGTGTTGGAAC
AATTTCAGCGTGAAAAAGCCGCGGAAATGAAGCACTGGGAGAGGACGCAC
GCGAAACAACTGGCGGCGGAGGCAGCGGCGGCGGAGACGCGTGAGGCCCA
TTTGCGTACCTCCTTCCAAGCTCAGATCGCTGACGCCCAGGCACAAGCCA
CTCTCAGCGTGGAGGAATCGGAGCGGGAGACACGCAAAGCCCTAGCGGAG
TGTCAGCAAGCACGGCGGGAAGCGGCCTCGATGCGGAAGGCCCTGGACGA
GGCCATTGCCCGGCTGCATTCCAACGAGTCCGACGTGGTCCCGAGGCAGT
TGATTGGGAACCTGGTGGTGTCCTACTACAGCCAGGGCAGGCCCACGGAG
ACCCTGGAAATCATCGCACGGACCTTGGGGCTTGCAGACGAAGAGCGGAT
AAAAGTCGGTTTGAGGGCTTTGCGGCCAGGAGGGGGTAGGCGGGCGGGGG
TGGGGGAAGGGGGGGGGGCGGGCAGCCCGGGGAAAAGGGGGTTGGTAGGA
GGGTTGTTCTCAAGGGTGGGAGGGGTCATGAGTTCTCCGCGCAAGGAATT
CGTACCCGAGAACGGCACAGAAGGGAAGACGTTGGGGGACCTATGGCTGG
ATTACCTGATGAAGGAGACGGAGGAGGAAGTGGAAGAGGGGGAGGAGGAG
GAGGAGGAGGAGGATGGAGGGGAGGACCAGGAGGAGAAAGAGATCGCACC
ACCAGATCTGGTGTCCCTCGAGGCTCCTGTTTTGACGTCGGTGGGGAACA
AAGAGAGGGAAGGGAAGCCGCCAGGCATGGGAGAGTCGAAGGCCCTCCAA
GAAGAGGAGGGAGACGGGACTGGAGGGGTGATTGAGAGCAAGGTGCACCC
TCCCTCCTAGCACGCCTAAAGCTCGCCCTTCTTAAGACAATGTGTGTGTA
ATAAAGTCATTCTGAACAAAGAGGAAGGAAGGACAATGCCGCGATCGGCC
AAGCGGTCGAGGTGGTGT

Coding sequence (CDS) from alignment at KK037256.1:172294..175011-

>rna9815 ID=rna9815|Name=rna9815|organism=Nannochloropsis gaditana|type=CDS|length=2364bp|location=Sequence derived from alignment at KK037256.1:172294..175011- (Nannochloropsis gaditana)
ATGGATGTTCGCCCCCCTCCTCGGGATTTCAGGGTGATCCTCCAACGCCT
CCAGGCAGTCCTGGAATCGTCGGCCTCCCACGCCCAGGCCGATGTGGAAA
TGGCGCGAAGACGAAGAGAAGAAGCGTGGGGGGAGGAAAAAGCAAGGTAC
CTGGCACGCATAGCGGCCGTGGAAGGCGAATGCCGTGCGCTGGAGGAGGC
CAGCGCGGCAAGCGTCTCAGCCGCCCACCGGGAGAAGCAGAGAGAGTCGG
GGGAAGACCGCGGCCAATCCCATGCCTTGGAAAACACCCTGGCCCTGGCG
GAAGGGATGAAGGGAGAAGAGGCAGCACAGGGGGAAAAGAAGAGCCCGTC
CACCGGCCCAGGCCGGGAGGGGGAGGCGGAGGAGCTGCGACGGCGTTGTT
TTCAGCTCGAGGCGGAGCTGGAGGGCTGGAAGGGGGGGGAGCCGAAGGAA
GTGACGGACCTCCGGAACGAGACCGAGGAATTGCGGCGCCGGTGCCAGAT
GTTGGAAGCGGAGTCGGCCAGTCTCCGTGCAAGGGATTCTGGGAGCGAGA
GGAACCGCACCAGCAGTGGGCACACCCCCGGTTCGATCCCTGCGACAACC
CCCCCCTCCAGGGTGTCGGACGGCGAGGCACTGGCCCAGGAACTAGAGGA
GGCCAGGAGGGAGGCCATGGAGTGGGAGGCGGCGGCGGAAGCTCGGGCTT
TGGAGTTGAAACATGTGCGGGAGAGGGTGATGGTCTTGGAGAAGGAGCAG
AAAACGGCGGAGGCGCAGCAGCAGGAGGCGTTGCGGGTGACCCGGGCGAC
AACCGAGGCGGAACTGGGGCATCTGCGCGCGGAACTCGACCGGCTGCGGG
GAAGGCAAGGCGAAGGGGAGGAGGAGGAGGCCCGGTCAGAGGAGCGGAAC
CGGTGGACAAGGGAGATTCAACGCCTGGAGCACGCCTTGGCAGAGGAGAA
GCAAAAGAAAACCCTTACCCATGCCGGTTCCCTGTCCGAGTCGGAGCTTT
CCAAGCGGCTGGCGGAGGCGGCTGGGAAATTGCGTGGGAAAGAGCACGAA
ATGGGCCAGCTCCGGGTCGTCATCGAGCAGCAACGGGAACTGGTCAAGGC
GAAGGCGCATGAATTGGAGCGGGCCCGCAGGGAAGGGGAGGCGCACCTCC
GGCGGTTGGAGGCGGCGGAGGAAATGGTGAAAGGCCTCGTGGAGGAGAAA
GACCGGCATCTGCACGCCCTCCGGGCGGCCGACGCCCGGGCCCAGGAGGC
CGACTTGGAGGCGCTGCGGGAGGAGGTGGCGGTCTGGAAGGCCCGCGTGG
CCACCATGGAGGCCAATGCCGTGCGACAAGAGGAGGAGTCCGAGAACAAA
GTGAGGGGGTTGTTGGAGCGCCTGCAGGCTGCGGAGCATGCCGTCCATGA
ACAAGGGGCGGAGCTGGCGGGCACCCGGGCGGACTTGGGTGTCCTGACTC
GGGACTTCGAACAGAGCGAGACAGCCAAGGCGAATTTGCAGAAGGTGTTG
GAACAATTTCAGCGTGAAAAAGCCGCGGAAATGAAGCACTGGGAGAGGAC
GCACGCGAAACAACTGGCGGCGGAGGCAGCGGCGGCGGAGACGCGTGAGG
CCCATTTGCGTACCTCCTTCCAAGCTCAGATCGCTGACGCCCAGGCACAA
GCCACTCTCAGCGTGGAGGAATCGGAGCGGGAGACACGCAAAGCCCTAGC
GGAGTGTCAGCAAGCACGGCGGGAAGCGGCCTCGATGCGGAAGGCCCTGG
ACGAGGCCATTGCCCGGCTGCATTCCAACGAGTCCGACGTGGTCCCGAGG
CAGTTGATTGGGAACCTGGTGGTGTCCTACTACAGCCAGGGCAGGCCCAC
GGAGACCCTGGAAATCATCGCACGGACCTTGGGGCTTGCAGACGAAGAGC
GGATAAAAGTCGGTTTGAGGGCTTTGCGGCCAGGAGGGGGTAGGCGGGCG
GGGGTGGGGGAAGGGGGGGGGGCGGGCAGCCCGGGGAAAAGGGGGTTGGT
AGGAGGGTTGTTCTCAAGGGTGGGAGGGGTCATGAGTTCTCCGCGCAAGG
AATTCGTACCCGAGAACGGCACAGAAGGGAAGACGTTGGGGGACCTATGG
CTGGATTACCTGATGAAGGAGACGGAGGAGGAAGTGGAAGAGGGGGAGGA
GGAGGAGGAGGAGGAGGATGGAGGGGAGGACCAGGAGGAGAAAGAGATCG
CACCACCAGATCTGGTGTCCCTCGAGGCTCCTGTTTTGACGTCGGTGGGG
AACAAAGAGAGGGAAGGGAAGCCGCCAGGCATGGGAGAGTCGAAGGCCCT
CCAAGAAGAGGAGGGAGACGGGACTGGAGGGGTGATTGAGAGCAAGGTGC
ACCCTCCCTCCTAG

Synonyms

Publications