EWM20891.1, cds9784 (CDS) Nannochloropsis gaditana

Overview
NameEWM20891.1
Unique Namecds9784
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:172402..174765 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20891.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100201g8.6916.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:172402..174765 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20891.1 vs. NCBI_GenBank
Match: gi|585100842|gb|EWM20891.1| (hypothetical protein Naga_100201g8 [Nannochloropsis gaditana])

HSP 1 Score: 1530 bits (3960), Expect = 0.000e+0
Identity = 787/787 (100.00%), Postives = 787/787 (100.00%), Query Frame = 0
Query:    1 MDVRPPPRDFRVILQRLQAVLESSASHAQADVEMARRRREEAWGEEKARYLARIAAVEGECRALEEASAASVSAAHREKQRESGEDRGQSHALENTLALAEGMKGEEAAQGEKKSPSTGPGREGEAEELRRRCFQLEAELEGWKGGEPKEVTDLRNETEELRRRCQMLEAESASLRARDSGSERNRTSSGHTPGSIPATTPPSRVSDGEALAQELEEARREAMEWEAAAEARALELKHVRERVMVLEKEQKTAEAQQQEALRVTRATTEAELGHLRAELDRLRGRQGEGEEEEARSEERNRWTREIQRLEHALAEEKQKKTLTHAGSLSESELSKRLAEAAGKLRGKEHEMGQLRVVIEQQRELVKAKAHELERARREGEAHLRRLEAAEEMVKGLVEEKDRHLHALRAADARAQEADLEALREEVAVWKARVATMEANAVRQEEESENKVRGLLERLQAAEHAVHEQGAELAGTRADLGVLTRDFEQSETAKANLQKVLEQFQREKAAEMKHWERTHAKQLAAEAAAAETREAHLRTSFQAQIADAQAQATLSVEESERETRKALAECQQARREAASMRKALDEAIARLHSNESDVVPRQLIGNLVVSYYSQGRPTETLEIIARTLGLADEERIKVGLRALRPGGGRRAGVGEGGGAGSPGKRGLVGGLFSRVGGVMSSPRKEFVPENGTEGKTLGDLWLDYLMKETEEEVEEGEEEEEEEDGGEDQEEKEIAPPDLVSLEAPVLTSVGNKEREGKPPGMGESKALQEEEGDGTGGVIESKVHPPS 787
            MDVRPPPRDFRVILQRLQAVLESSASHAQADVEMARRRREEAWGEEKARYLARIAAVEGECRALEEASAASVSAAHREKQRESGEDRGQSHALENTLALAEGMKGEEAAQGEKKSPSTGPGREGEAEELRRRCFQLEAELEGWKGGEPKEVTDLRNETEELRRRCQMLEAESASLRARDSGSERNRTSSGHTPGSIPATTPPSRVSDGEALAQELEEARREAMEWEAAAEARALELKHVRERVMVLEKEQKTAEAQQQEALRVTRATTEAELGHLRAELDRLRGRQGEGEEEEARSEERNRWTREIQRLEHALAEEKQKKTLTHAGSLSESELSKRLAEAAGKLRGKEHEMGQLRVVIEQQRELVKAKAHELERARREGEAHLRRLEAAEEMVKGLVEEKDRHLHALRAADARAQEADLEALREEVAVWKARVATMEANAVRQEEESENKVRGLLERLQAAEHAVHEQGAELAGTRADLGVLTRDFEQSETAKANLQKVLEQFQREKAAEMKHWERTHAKQLAAEAAAAETREAHLRTSFQAQIADAQAQATLSVEESERETRKALAECQQARREAASMRKALDEAIARLHSNESDVVPRQLIGNLVVSYYSQGRPTETLEIIARTLGLADEERIKVGLRALRPGGGRRAGVGEGGGAGSPGKRGLVGGLFSRVGGVMSSPRKEFVPENGTEGKTLGDLWLDYLMKETEEEVEEGEEEEEEEDGGEDQEEKEIAPPDLVSLEAPVLTSVGNKEREGKPPGMGESKALQEEEGDGTGGVIESKVHPPS
Sbjct:    1 MDVRPPPRDFRVILQRLQAVLESSASHAQADVEMARRRREEAWGEEKARYLARIAAVEGECRALEEASAASVSAAHREKQRESGEDRGQSHALENTLALAEGMKGEEAAQGEKKSPSTGPGREGEAEELRRRCFQLEAELEGWKGGEPKEVTDLRNETEELRRRCQMLEAESASLRARDSGSERNRTSSGHTPGSIPATTPPSRVSDGEALAQELEEARREAMEWEAAAEARALELKHVRERVMVLEKEQKTAEAQQQEALRVTRATTEAELGHLRAELDRLRGRQGEGEEEEARSEERNRWTREIQRLEHALAEEKQKKTLTHAGSLSESELSKRLAEAAGKLRGKEHEMGQLRVVIEQQRELVKAKAHELERARREGEAHLRRLEAAEEMVKGLVEEKDRHLHALRAADARAQEADLEALREEVAVWKARVATMEANAVRQEEESENKVRGLLERLQAAEHAVHEQGAELAGTRADLGVLTRDFEQSETAKANLQKVLEQFQREKAAEMKHWERTHAKQLAAEAAAAETREAHLRTSFQAQIADAQAQATLSVEESERETRKALAECQQARREAASMRKALDEAIARLHSNESDVVPRQLIGNLVVSYYSQGRPTETLEIIARTLGLADEERIKVGLRALRPGGGRRAGVGEGGGAGSPGKRGLVGGLFSRVGGVMSSPRKEFVPENGTEGKTLGDLWLDYLMKETEEEVEEGEEEEEEEDGGEDQEEKEIAPPDLVSLEAPVLTSVGNKEREGKPPGMGESKALQEEEGDGTGGVIESKVHPPS 787          
BLAST of EWM20891.1 vs. NCBI_GenBank
Match: gi|397569655|gb|EJK46883.1| (hypothetical protein THAOC_34430 [Thalassiosira oceanica])

HSP 1 Score: 94.7449 bits (234), Expect = 2.523e-16
Identity = 93/321 (28.97%), Postives = 158/321 (49.22%), Query Frame = 0
Query:  416 EADLEALREEVAVWKARVATMEANAVR-------------------------QEEESENKVRGLLERLQAAEHAVHEQGAELAGTRADLGVLTRDFEQSETAKANLQKVLEQFQREKAAEMKHW-ERTHAKQLAAEAAAAETREAHLRTSFQAQIADAQAQATLSVEESERETRKALAECQQARREAASMRKALDEAIARLHSNESDVVPRQLIGNLVVSYY-SQGRPT-ETLEIIARTLGLADEERIKVGLRALRPGGGRRAGVGEGGGAGSPGKRGLVGGLFSRVGGVMSSPRKEFVPENGTEGKTLGDLWLDYLMKET 708
            ++ LE+LR+E A  K R+A+M  ++ +                         Q++ SE+  + L ER  AA   V     +L   RADL +   D +++ TA  NL   LE FQ E+ +E+    E+  A + A +AA   + EA ++ +  AQ+ D Q  A  SV+    E  +   +  + RRE++++RKALDEAIARL +++ DV+ R LI N+++ ++  +G+   + + ++   L   ++E+ K             A +GEG GA        +  ++  V   +  P K  V  +  EG+T+ D W+ +LM ET
Sbjct:  528 QSQLESLRKENASMKDRLASMSEDSEKLGGLKMELQMLEEERLRERSALESAQDKTSEDYAQVLNER-DAANATVRNLEQQLVAARADLELAHTDRDRAVTANDNLTMALEAFQSERESEISLLTEQRIADEEAVKAAHQASLEA-MKEANAAQMRDVQYAADKSVQNQLAEMDRMETDLLECRRESSNLRKALDEAIARLQTSQEDVIDRNLIKNVILDWHGKRGKEKRDVMILLGSILNFNEDEKDK-------------ALIGEGPGA--------LHKVYDAVAAPL-PPAKLNV--DKIEGETVRDKWVSFLMAET 822          
BLAST of EWM20891.1 vs. NCBI_GenBank
Match: gi|224008875|ref|XP_002293396.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970796|gb|EED89132.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 88.1965 bits (217), Expect = 3.296e-14
Identity = 74/248 (29.84%), Postives = 126/248 (50.81%), Query Frame = 0
Query:  471 ELAGTRADLGVLTRDFEQSETAKANLQKVLEQFQREKAAEMKH-WERTHAKQLAAEAAAAETREAHLRTSFQAQIADAQAQATLSVEESERETRKALAECQQARREAASMRKALDEAIARLHSNESDVVPRQLIGNLVVSYYS-QGRPTETLEI-IARTLGLADEERIKVGLRALRPGGGRRAGVGEGGGAGSPGKRGLVGGLFSRVGGVMSSPRKEFVPE----NGTEGKTLGDLWLDYLMKETEEE 711
            +LA   AD+ +   D  ++  A  NLQ+ LE FQ E+ AE+    E+  A + A EAA   + EA +R +  A+I D Q  A  SV+ S  E  K  A  Q+ R+   ++R+ALDEAI+RL +++ DV+ R LI N+++ +++ +G+  + + I +   L   ++E+ K             A + EG G               R+ G +++P     P     +  EG ++ + W+++L+ ET EE
Sbjct:  720 QLAAAHADVELANTDRNRALMANENLQRALEDFQSERDAEIALLMEQRTADEEAIEAAHNASLEA-MREANAAEIRDIQYAANKSVQNSLVEIDKMEATIQECRKNNLNLRRALDEAISRLQTSQEDVIDRSLIKNIILDWHAKKGKAKQDVMILLGSILHFTEDEKDK-------------AFISEGPGT------------VDRIVGAVAAP---LPPSKLNVDKLEGDSVREKWVNFLLAETGEE 938          
BLAST of EWM20891.1 vs. NCBI_GenBank
Match: gi|971514248|dbj|GAQ83959.1| (ER-Golgi vesicle-tethering protein [Klebsormidium nitens])

HSP 1 Score: 87.4261 bits (215), Expect = 6.162e-14
Identity = 52/141 (36.88%), Postives = 86/141 (60.99%), Query Frame = 0
Query:  579 MRKALDEAIARLH--SNESD-VVPRQLIGNLVVSYYSQGRPTETLEIIARTLGLADEERIKVGLRALRPGGGRRAGVGEGGGAGSPGKRGLVGGLFSRVGGVM--SSPRKEFVPENGTEGKTLGDLWLDYLMKETEEEVEE 714
            +RKAL++++ R+H  S++SD  V R+++  L+V+Y+ +    E L+++AR LG  +E++ +VGL  L    GRR  V   G  G+PG+  +VG +F   GG    SSPR   V +      T  DLW+D+L+KE +++ E+
Sbjct:  662 LRKALEQSMTRIHRMSSDSDQYVDRRIVIKLLVTYFEKRHSAEALDLMARILGFTEEDKKRVGLAQL----GRRGVV--SGVLGAPGR--IVGAVF---GGASAPSSPRAS-VSDRDPSSATFTDLWIDFLLKEAQQQEEQ 790          
The following BLAST results are available for this feature:
BLAST of EWM20891.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585100842|gb|EWM20891.1|0.000e+0100.00hypothetical protein Naga_100201g8 [Nannochloropsi... [more]
gi|397569655|gb|EJK46883.1|2.523e-1628.97hypothetical protein THAOC_34430 [Thalassiosira oc... [more]
gi|224008875|ref|XP_002293396.1|3.296e-1429.84predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|971514248|dbj|GAQ83959.1|6.162e-1436.88ER-Golgi vesicle-tethering protein [Klebsormidium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9815rna9815Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications