rna9813, rna9813 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9813
Unique Name	rna9813
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	930
Alignment location	KK037256.1:167620..169062 -

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Properties


Property Name	Value
Product	brix domain containing 1
Orig transcript id	gnl\|cribi\|Naga_100201g6.6908.mrna
Orig protein id	gnl\|cribi\|Naga_100201g6.6908
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:167620..169062 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100201g6	gene9528	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9813	rna9813-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20883.1	cds9782	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:167620..169062-
coding sequence from alignment at KK037256.1:167620..169062-

mRNA sequence

>rna9813 ID=rna9813|Name=rna9813|organism=Nannochloropsis gaditana|type=mRNA|length=930bp
ATGCCGCGTCCAAAAAATACGCCTAAACGTGACGCACAAGCCCTTGTTCA
AGTGAGTGAGAGACCGAAAAGTGAAGAGGCTGTGAGCGACGACGAGTGGG
TGCCGCCTCCCTTGCCCGCAAAGGCAACAGGAGCAAGCCAGAAGCCGCAC
AAGCAAGTCAAGATGGGCACAACCGCATCGCCTTCATCACTGGTGTACAC
AGAGCCACCACCAGGAATGGAGTCGGAATGCAGCTTTGAGAACGTCAAAG
TTACCGCGACAAAGCCGTCTAGCGCGACAGCACCGTCTGGGTGGAGGACA
GCGTTAAAAAAGGAAAAAGAGGGCCTTATCGACAAGAAAAAGGCCAAGAC
AACCATTGAGTGGGGTAGCTCTGGAGACTCCTTTAATGCGGACGATTTGG
CCGTGGAGTACGTGATGGGAGCCGGAGATGGCGGGACAGGCATGAGAGGT
TTGGGTGTCAGCATGCACGAACAGCTGATGACTTGCGCGCGCCTGGGAGC
CGCGGAAACAGCAGGGAGGGCTGTCGACATAGCCTGGTCCAATCCAGGAG
GGGCGGAGGCAGGGGTAGAGGTAGGGAAGGAGGGAAGGAGACGACCGACG
CTAATTGTGACGATGGAATTCAACGGGAAATCTTTCCGAGACCAGGGGCC
TCTGTACAGCATGCACGAAATGGCCCGGGTCTTCGCGGGCGTGCTGCAAA
AGCAATCGACGAAAAGACGCAAAGCCACCATCGAGCACTCATCAGTCAAG
CTAGAGGAGGTTGCCAGACGCAGTCCACCTTTTTTCTGGTCCCTTTTCCA
TCACAACCACGCCGACGTCCGCAAAGGACTTGCGAAGGCCAAGATCACGT
GTATCCTTGTGAATACATTCGAAAGTGACATCAAGACGGATACGGATGGA
GCAGGCGGACAGGTGCCCCGCGCACTGTAA

protein sequence of rna9813

>rna9813-protein ID=rna9813-protein|Name=rna9813|organism=Nannochloropsis gaditana|type=polypeptide|length=347bp
MALKSSPKGQGKRDTGPKAKRKAPTPSAKAAKVASMGTKRVTPKKPKARV
LRLLKAKEPKLVEDGKQALFLKGTKCPQLLQTVLRDLTKLLKPNAKFLSR
KNEIRPFEDVTSLEFLADKNDCALFCFGSHSKKRPQNLIMGRTYDKHLLD
MVEFGVSSVEGLDAVKATEKKRCGSKPCLVFAGDGWHQDATLERIQNLFM
DFFRVDEVNKVALAGIDAVTSFTAMGTDSILVRNYHVKFKKSQGRVPNVL
LEAMGPNFTLTVRRHQLAAPDLWRTACKQPKGLRPKKVKNESTNVLGETV
GRVHVGRQDLTSMRVKRVKAGNTARTRRSDVIKPVTTESRKPAYLST

mRNA from alignment at KK037256.1:167620..169062-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9813 ID=rna9813|Name=rna9813|organism=Nannochloropsis gaditana|type=mRNA|length=1443bp|location=Sequence derived from alignment at KK037256.1:167620..169062- (Nannochloropsis gaditana)
ATGGCACTCAAGTCATCCCCCAAAGGACAAGGGAAACGCGACACCGGGCC
AAAAGCTAAGAGAAAGGCACCTACACCGTCGGCGAAAGCTGCAAAAGTTG
CATCCATGGGGACGAAACGCGTCACGCCCAAAAAACCCAAAGCGCGCGTG
CTACGGCTGCTGAAAGCCAAGGAACCGAAGCTGGTGGAGGATGGGAAGCA
AGCTTTATTTTTGAAGGGAACGAAATGTCCTCAGCTTTTGCAGACGGTGC
TCCGGGACTTGGTGCGTATGCCATGCTAACGTTGATGTTTATTGCACGGT
TGGAAATCTAGACACTCTCGACTTGGCACGCAAGTTTCCCTCCCGCAACT
CCATCCCTTCATTCCTTCCCCTCCCTCCTTCCTCTGCAGACCAAACTCTT
GAAGCCCAACGCAAAGTTTTTGAGCCGAAAGAATGAAATTCGTCCCTTTG
AGGACGTAACCTCCCTGGAGTTCCTGGCCGACAAGAACGATTGCGCCCTT
TTCTGCTTTGGATCTCACAGTAAGAAGCGGCCGCAGAACCTGATCATGGG
ACGCACATACGACAAGCACCTCTTGGACATGGTTGAGTTCGGGGTCTCGA
GCGTGGAGGGGCTGGACGCTGTCAAGGCGACGGAGAAGAAGCGGTGCGGG
TCGAAACCCTGCCTGGTCTTTGCGGGGGACGGGTGGCACCAGGACGCGAC
CTTGGAGCGCATTCAGAACCTGTTCATGGGTAGGTGGGACGGATTTTTGG
TTTGTTTCTCCAGTCTGTGCCCTGCATGGTGAAAAAGGACGGATCGTAAA
GCCCGGTTGTGGGTTTCCAAACTGCTCCTTTTGTCCCTCAGTCATCAGAA
AGCTTTCACTTGACCTCCTTGCCTCCCCCCTCGCCCGCCCTCGTTCTTTC
TCCGTCCAGATTTTTTCCGGGTGGACGAGGTGAACAAGGTGGCTTTAGCA
GGCATAGACGCGGTCACGTCTTTCACGGCCATGGGGACCGACTCCATTCT
TGTCCGAAACTACCATGTCAAGTTCAAGAAATCGCAAGGACGCGTGCCCA
ATGTTTTACTGGAGGCTATGGGCCCTAATTTTACCCTTACTGTGCGACGG
CATCAATTGGCTGCACCGGATTTGTGGAGGACGGCTTGTAAGCAGCCAAA
GGGCTTGCGGCCGAAGAAGGTAAAGAACGAGTCCACCAACGTGCTGGGAG
AAACAGTGGGGAGGGTACACGTTGGCCGGCAGGATCTGACATCAATGCGT
GTAAAGCGGGTGAAGGCGTTGAGGAAAGGGAGGGGCGAGAGAGAAGAAGG
GGAGGCGGAGACGGGCGACGGCGTGGCGGAGGAGGTGGCTATGGATGAGA
GTGATGAGGGGGAATACAGCGAGGACTCGGAGGAGTGATGTGATAAAGCC
TGTGACTACAGAAAGTCGTAAACCTGCATATCTGTCAACGTAG

Coding sequence (CDS) from alignment at KK037256.1:167620..169062-

>rna9813 ID=rna9813|Name=rna9813|organism=Nannochloropsis gaditana|type=CDS|length=4176bp|location=Sequence derived from alignment at KK037256.1:167620..169062- (Nannochloropsis gaditana)
GGGGAATACAGCGAGGACTCGGAGGAGTGATGTGATAAAGCCTGTGACTA
CAGAAAGTCGTAAACCTGCATATCTGTCAACGTAGATTTTTTCCGGGTGG
ACGAGGTGAACAAGGTGGCTTTAGCAGGCATAGACGCGGTCACGTCTTTC
ACGGCCATGGGGACCGACTCCATTCTTGTCCGAAACTACCATGTCAAGTT
CAAGAAATCGCAAGGACGCGTGCCCAATGTTTTACTGGAGGCTATGGGCC
CTAATTTTACCCTTACTGTGCGACGGCATCAATTGGCTGCACCGGATTTG
TGGAGGACGGCTTGTAAGCAGCCAAAGGGCTTGCGGCCGAAGAAGGTAAA
GAACGAGTCCACCAACGTGCTGGGAGAAACAGTGGGGAGGGTACACGTTG
GCCGGCAGGATCTGACATCAATGCGTGTAAAGCGGGTGAAGGCACCAAAC
TCTTGAAGCCCAACGCAAAGTTTTTGAGCCGAAAGAATGAAATTCGTCCC
TTTGAGGACGTAACCTCCCTGGAGTTCCTGGCCGACAAGAACGATTGCGC
CCTTTTCTGCTTTGGATCTCACAGTAAGAAGCGGCCGCAGAACCTGATCA
TGGGACGCACATACGACAAGCACCTCTTGGACATGGTTGAGTTCGGGGTC
TCGAGCGTGGAGGGGCTGGACGCTGTCAAGGCGACGGAGAAGAAGCGGTG
CGGGTCGAAACCCTGCCTGGTCTTTGCGGGGGACGGGTGGCACCAGGACG
CGACCTTGGAGCGCATTCAGAACCTGTTCATGGATGGCACTCAAGTCATC
CCCCAAAGGACAAGGGAAACGCGACACCGGGCCAAAAGCTAAGAGAAAGG
CACCTACACCGTCGGCGAAAGCTGCAAAAGTTGCATCCATGGGGACGAAA
CGCGTCACGCCCAAAAAACCCAAAGCGCGCGTGCTACGGCTGCTGAAAGC
CAAGGAACCGAAGCTGGTGGAGGATGGGAAGCAAGCTTTATTTTTGAAGG
GAACGAAATGTCCTCAGCTTTTGCAGACGGTGCTCCGGGACTTGGGGGAA
TACAGCGAGGACTCGGAGGAGTGATGTGATAAAGCCTGTGACTACAGAAA
GTCGTAAACCTGCATATCTGTCAACGTAGATTTTTTCCGGGTGGACGAGG
TGAACAAGGTGGCTTTAGCAGGCATAGACGCGGTCACGTCTTTCACGGCC
ATGGGGACCGACTCCATTCTTGTCCGAAACTACCATGTCAAGTTCAAGAA
ATCGCAAGGACGCGTGCCCAATGTTTTACTGGAGGCTATGGGCCCTAATT
TTACCCTTACTGTGCGACGGCATCAATTGGCTGCACCGGATTTGTGGAGG
ACGGCTTGTAAGCAGCCAAAGGGCTTGCGGCCGAAGAAGGTAAAGAACGA
GTCCACCAACGTGCTGGGAGAAACAGTGGGGAGGGTACACGTTGGCCGGC
AGGATCTGACATCAATGCGTGTAAAGCGGGTGAAGGCACCAAACTCTTGA
AGCCCAACGCAAAGTTTTTGAGCCGAAAGAATGAAATTCGTCCCTTTGAG
GACGTAACCTCCCTGGAGTTCCTGGCCGACAAGAACGATTGCGCCCTTTT
CTGCTTTGGATCTCACAGTAAGAAGCGGCCGCAGAACCTGATCATGGGAC
GCACATACGACAAGCACCTCTTGGACATGGTTGAGTTCGGGGTCTCGAGC
GTGGAGGGGCTGGACGCTGTCAAGGCGACGGAGAAGAAGCGGTGCGGGTC
GAAACCCTGCCTGGTCTTTGCGGGGGACGGGTGGCACCAGGACGCGACCT
TGGAGCGCATTCAGAACCTGTTCATGGATGGCACTCAAGTCATCCCCCAA
AGGACAAGGGAAACGCGACACCGGGCCAAAAGCTAAGAGAAAGGCACCTA
CACCGTCGGCGAAAGCTGCAAAAGTTGCATCCATGGGGACGAAACGCGTC
ACGCCCAAAAAACCCAAAGCGCGCGTGCTACGGCTGCTGAAAGCCAAGGA
ACCGAAGCTGGTGGAGGATGGGAAGCAAGCTTTATTTTTGAAGGGAACGA
AATGTCCTCAGCTTTTGCAGACGGTGCTCCGGGACTTGGGGGAATACAGC
GAGGACTCGGAGGAGTGATGTGATAAAGCCTGTGACTACAGAAAGTCGTA
AACCTGCATATCTGTCAACGTAGATTTTTTCCGGGTGGACGAGGTGAACA
AGGTGGCTTTAGCAGGCATAGACGCGGTCACGTCTTTCACGGCCATGGGG
ACCGACTCCATTCTTGTCCGAAACTACCATGTCAAGTTCAAGAAATCGCA
AGGACGCGTGCCCAATGTTTTACTGGAGGCTATGGGCCCTAATTTTACCC
TTACTGTGCGACGGCATCAATTGGCTGCACCGGATTTGTGGAGGACGGCT
TGTAAGCAGCCAAAGGGCTTGCGGCCGAAGAAGGTAAAGAACGAGTCCAC
CAACGTGCTGGGAGAAACAGTGGGGAGGGTACACGTTGGCCGGCAGGATC
TGACATCAATGCGTGTAAAGCGGGTGAAGGCACCAAACTCTTGAAGCCCA
ACGCAAAGTTTTTGAGCCGAAAGAATGAAATTCGTCCCTTTGAGGACGTA
ACCTCCCTGGAGTTCCTGGCCGACAAGAACGATTGCGCCCTTTTCTGCTT
TGGATCTCACAGTAAGAAGCGGCCGCAGAACCTGATCATGGGACGCACAT
ACGACAAGCACCTCTTGGACATGGTTGAGTTCGGGGTCTCGAGCGTGGAG
GGGCTGGACGCTGTCAAGGCGACGGAGAAGAAGCGGTGCGGGTCGAAACC
CTGCCTGGTCTTTGCGGGGGACGGGTGGCACCAGGACGCGACCTTGGAGC
GCATTCAGAACCTGTTCATGGATGGCACTCAAGTCATCCCCCAAAGGACA
AGGGAAACGCGACACCGGGCCAAAAGCTAAGAGAAAGGCACCTACACCGT
CGGCGAAAGCTGCAAAAGTTGCATCCATGGGGACGAAACGCGTCACGCCC
AAAAAACCCAAAGCGCGCGTGCTACGGCTGCTGAAAGCCAAGGAACCGAA
GCTGGTGGAGGATGGGAAGCAAGCTTTATTTTTGAAGGGAACGAAATGTC
CTCAGCTTTTGCAGACGGTGCTCCGGGACTTGGGGGAATACAGCGAGGAC
TCGGAGGAGTGATGTGATAAAGCCTGTGACTACAGAAAGTCGTAAACCTG
CATATCTGTCAACGTAGATTTTTTCCGGGTGGACGAGGTGAACAAGGTGG
CTTTAGCAGGCATAGACGCGGTCACGTCTTTCACGGCCATGGGGACCGAC
TCCATTCTTGTCCGAAACTACCATGTCAAGTTCAAGAAATCGCAAGGACG
CGTGCCCAATGTTTTACTGGAGGCTATGGGCCCTAATTTTACCCTTACTG
TGCGACGGCATCAATTGGCTGCACCGGATTTGTGGAGGACGGCTTGTAAG
CAGCCAAAGGGCTTGCGGCCGAAGAAGGTAAAGAACGAGTCCACCAACGT
GCTGGGAGAAACAGTGGGGAGGGTACACGTTGGCCGGCAGGATCTGACAT
CAATGCGTGTAAAGCGGGTGAAGGCACCAAACTCTTGAAGCCCAACGCAA
AGTTTTTGAGCCGAAAGAATGAAATTCGTCCCTTTGAGGACGTAACCTCC
CTGGAGTTCCTGGCCGACAAGAACGATTGCGCCCTTTTCTGCTTTGGATC
TCACAGTAAGAAGCGGCCGCAGAACCTGATCATGGGACGCACATACGACA
AGCACCTCTTGGACATGGTTGAGTTCGGGGTCTCGAGCGTGGAGGGGCTG
GACGCTGTCAAGGCGACGGAGAAGAAGCGGTGCGGGTCGAAACCCTGCCT
GGTCTTTGCGGGGGACGGGTGGCACCAGGACGCGACCTTGGAGCGCATTC
AGAACCTGTTCATGGATGGCACTCAAGTCATCCCCCAAAGGACAAGGGAA
ACGCGACACCGGGCCAAAAGCTAAGAGAAAGGCACCTACACCGTCGGCGA
AAGCTGCAAAAGTTGCATCCATGGGGACGAAACGCGTCACGCCCAAAAAA
CCCAAAGCGCGCGTGCTACGGCTGCTGAAAGCCAAGGAACCGAAGCTGGT
GGAGGATGGGAAGCAAGCTTTATTTTTGAAGGGAACGAAATGTCCTCAGC
TTTTGCAGACGGTGCTCCGGGACTTG

Synonyms

Publications