rna9810, rna9810 (mRNA) Nannochloropsis gaditana

Overview
Namerna9810
Unique Namerna9810
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2127
Alignment locationKK037256.1:163529..165026 -

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100201g3.6917.mrna
Orig protein idgnl|cribi|Naga_100201g3.6917
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:163529..165026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100201g3gene9525Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9810rna9810-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20892.1cds9779Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9810 ID=rna9810|Name=rna9810|organism=Nannochloropsis gaditana|type=mRNA|length=2127bp
ATGGCTGGGGCCCGCGTGCAAATCTTGCACAAACCGGCGGGTAACGGCCA
CCCACGGTCGGGTAATGGCCACCAACGGTCGGACCTCAACCCTGCCAGGC
GCGGCCCCGCCGATGACGGCACAGGCCGCAGCCCCCCCTCCGCCGAGCAC
GAAAGGGGTGGGCAGGAGGAAAGGACTCTTCCTCTCTCTGTGCCCTTTCC
GGCGGGCGGGGAAGACTCGGAGGGAGGAGGGGGCAGGGAAGTAGGAAGAG
GCGTCCGAGGAGGGGCGCGAGGGCGGGGCCGAGGGCGAGGAGGGGGGGGA
GGAAGCGGTCGGGAGGGCAGCGGCCCTGCCTTGTTGCAGCGACTGGGCCC
TTCACCTCCTCGATCCAGGCCCGTGGAGGCAGGGCTGGGGCGAGGGAGGG
AGGGAGGACGTGGTGGAGGACGAGGTCGTGGCTTTCAGCTAGGACAGGCA
CGCCTACGTCCCTCCCTCCCTCCTTCGACCCCTGAGGACGAGGACGCGCT
CCCAGCTATCCACCCCGCTGAGTCCCCCTCCTCTCCCTCCCTCCCTCGCT
CGCGCTCACCCGCGGGGGAAAGGGAGGTGGTGGAGGTGACGCTGAGAGGG
AGGGCAGGCAGGAAACAGGCGGGGGGGCGGGACGGGAGAGGGAAGCGGAA
TGGGAAAGACGCGAGGGAGGAGGGGGAGAGGCAGCCACCTCGACCTCGGG
AAGGGCCCGCTGAAGAAGAGGAGGCCAAGGGGAGGGAGGGCGAGGAAGGG
GCGGGGGGGCGACGCCTGCAGAGAGGTCGACGGCCTCAGGGGGCGAGGGA
GGAGTTGGGGCCGGGGATGGCACGGGGCCGAGGGGGAGGAGGACGGGGCC
TCCGTCGGGAGTCTTCGCCGGCGCAGGAGAAGGCGGAAGCAGGATTATCG
GCACAAGCTCCGTCCCGCCGGGTAGAGGACGCGAGGCGAGGGGCGGCACT
ATCCCCCCCGCGGCTTTTGCACCGGGACCGGGAGGGGAAGCTTGCCACCA
AGCGCCCTCCCAAGAACAACCAGCGGGTGGTGACCATCCACTACACTCAA
GAGGCTACCGCCCCACCCACGGCGCTACCGGATCCTGCGCCGGCCCCTCC
TTCGCCCCTGGTCATCCGGGTATCTTTGGCCGATGTCTTGGCGACTGCGG
CCAAGGCCAAGGCGCGCAGGGCGGCTGTCGAGGCCCCTCATGCAGCGCGT
TCAGCTCCTGCAGCTGCCGAGGCGACTGCTGGTGTGGGTGTAGATGCCAC
GAAGACGGCAACGCCGGATGTGGATATGGGCCACGGGCAGGGTTCGAATC
CCCCCGCAGTGACAGTGAGCGTCAGTGAGCTTTTAGCGGCCTCCGGGAAA
CTCACGCCGTCCTCCCTGTGAGGACTGGTAGGTATCCATGCCTCGCGCGG
ATTCCGGCAGTCCTGTATACGTCTTTTCATGCACCGTCATGAAGGTCCAG
GGGGCCAAGGGCGGGCGGGGGAGGGACGGGGGCTTCTGAGGGGTGGGCTA
AATAGGGACGACATCGATCTGTTTGGATCGCCCGGGTACCGGCATCTTTT
GGAAACAGCGCGCGGACTCGATGAGCTGCGGTAGGCACCGACCCTCCTCT
TCATGCCGGTCAGGCGTCTCGCAGGTGCGATTGTCGTCGCCATGGCCGGG
GCGGGTGGAGAAGGGTGTGTGTGTGGCCTGGAAGAAGCGCAGGAGGATAC
CCTGACCTTGGAGTGGCGGGAGATTGCCTGGCTGGCAGGGATTGAGGGCT
GTGGTGAGCCTGCGAGGGGAAATAGAAAGAGGTGGGGGATGCTTAGGAGG
AAGGCTGAGCCTTGACGCGGTTCGATTTGAGAATGATGGGGAGAAAAGGG
AGGGAGGAGGGCCTTTGCGGTTCGGAAGATGGGTGTTCTTGGAGGGTGGA
AGGGGGGGGGTATCAAACAAGGGGGCGAGGAGGGAAGGAAAGTGTCTGTT
GGAGGGACATAGCGAGAAAGAGAAGGTTGAAAGGAGGAAGAGCACTGAGC
ACCCGAAACGGGCGGCGGGGTAATGGGGTGGCAAGGAAGAGGGAAGGGAT
CGCTTAAAGGGAAGGAGGGTGAGATCGTGGGGCGGGAGGCTGTGCACTGA
ACATCGAAACTAATGTAACCGACAAAG
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protein sequence of rna9810

>rna9810-protein ID=rna9810-protein|Name=rna9810|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MADPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQF
CTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFA
DENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLD
PASMLTVRKVENTDVKRLKVEVTECGEL
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mRNA from alignment at KK037256.1:163529..165026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9810 ID=rna9810|Name=rna9810|organism=Nannochloropsis gaditana|type=mRNA|length=1498bp|location=Sequence derived from alignment at KK037256.1:163529..165026- (Nannochloropsis gaditana)
GAAGCCTCAAGCCGATTTGGCGACAGAGTCACTTAAAAAACACCAGCACG
CCTGCCTGATACAAGCCGAACAGAGACAGAGACTGTCCACGCATCCCTGA
TGGTCGCATCGACGACATCACAACGCAAACGGCATGACGCAGATGGTGTC
TTGAATGCCTGTGTCTGGGCAACATTACAAGGAGGGCTTATCTCGCCCCC
ATAGAGATATGTCAGCCGTCGCACAAGAGGGCTACTCTACTCGTTCAATG
AATCGAGAACCTCGGGGACACGCTTACGAGACCTCGCGTGCACTTACAAC
ATGCTCTATCTGGTAGTACTATTTGGAGTGCATGACAAAGAGGGACAGGC
TATAGATCTTGGCATGCTGCATTTTTTGGGCCGCCCGCCCTTTGCCTCCC
TATCGTATACAGCCAACGCCGTGTTTATTGCCATCGGTTCGGAAATCGAG
ATGATTTTGTGCGTGATAACTTTCACCATTTGGTCTGGCATTGCATATCG
GATGCTTTCTTCTCCTGCACTTAATTTGCTTTGTGGGTCTGAAGCTCCTC
GCCTCTAACTAACCTCCCTGTTGCTAGCTCTCGAACGGGCACATTTCCCG
CGAATTCTCCAGGGATAGCGACCAAACCACGACCATGGCCGACCCTGCCG
TTCTCGAGGCAGTCAACCGGGGCAATCCTGTTGTTTTCTTGGACGTCTCC
ATCGCCAACCGCCCGGCCGGACGTATCAAAATGGAACTTTTCAAAGACGT
AGTTCCCAAGACGGTAGAAAACTTCAGACAGTTCTGCACGGGGGAGTATC
GTGAGACCGGATTGCCATTAGGCTACAAAGGATCGCCTTTCCACCGCGTG
ATCAAAGACTTTATGATTCAGGTACGCACAGTTTGGAGCAAGGATCGACG
AACCGAGAGACCTATCGCGGGCGCCACTGTCGAGTCACTGGCACGCATGC
AAACATTTCGGAGTCCCGTGCTTGGAAAAACGATTGAAAATGTGTCAGAC
GCATCAGTCCGAAGGTGATACCTTGATCCCGTCCTATCCACCTGTCTGTT
CGGCGGCCTCCCAGGCCCTCCCTCACCCGTTTCTCCCTCTTCCTCCCCTT
CACGGCCCCTCCCAGGGCGGAGATTTCATGAAAGGCGATGGCTCGGGTCT
CAAATCCATCTACGGAGATAAATTCGCGGACGAAAACTTCGATCTGCGGC
ACACGGGGCCCGGCCTGCTCTCCATGGCGAACAGCGGGCCCAACACGAAC
GGCTGCCAGTTTTTCATCACCTGCGACAAGTGCGAGTGGCTGGACGGAAA
GCACGTGGTCTTCGGCAAGGTCTTGGACCCGGCCTCCATGCTCACAGTCC
GCAAGGTGGAGAACACGGACGTGAAACGGCTCAAAGTGGAGGTGACTGAG
TGCGGCGAATTGTAGGGAAGGGGGTAGGCGTAGGGGCAAAGGATGTATAT
AAAGTGAACACGCACAAAGCAACGACAAAGCTCCGCCGACGGAGCCCT
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Coding sequence (CDS) from alignment at KK037256.1:163529..165026-

>rna9810 ID=rna9810|Name=rna9810|organism=Nannochloropsis gaditana|type=CDS|length=1074bp|location=Sequence derived from alignment at KK037256.1:163529..165026- (Nannochloropsis gaditana)
GGCGGAGATTTCATGAAAGGCGATGGCTCGGGTCTCAAATCCATCTACGG
AGATAAATTCGCGGACGAAAACTTCGATCTGCGGCACACGGGGCCCGGCC
TGCTCTCCATGGCGAACAGCGGGCCCAACACGAACGGCTGCCAGTTTTTC
ATCACCTGCGACAAGTGCGAGTGGCTGGACGGAAAGCACGTGGTCTTCGG
CAAGGTCTTGGACCCGGCCTCCATGCTCACAGTCCGCAAGGTGGAGAACA
CGGACGTGAAACGGCTCAAAGTGGAGGTGACTGAGTGCGGCGAATTGTAG
ATGGCCGACCCTGCCGTTCTCGAGGCAGTCAACCGGGGCAATCCTGTTGT
TTTCTTGGACGTCTCCATCGCCAACCGCCCGGCCGGACGTATCAAAATGG
AACTTTTCAAAGACGTAGTTCCCAAGACGGTAGAAAACTTCAGACAGTTC
TGCACGGGGGAGTATCGTGAGACCGGATTGCCATTAGGCTACAAAGGATC
GCCTTTCCACCGCGTGATCAAAGACTTTATGATTCAGGGCGGAGATTTCA
TGAAAGGCGATGGCTCGGGTCTCAAATCCATCTACGGAGATAAATTCGCG
GACGAAAACTTCGATCTGCGGCACACGGGGCCCGGCCTGCTCTCCATGGC
GAACAGCGGGCCCAACACGAACGGCTGCCAGTTTTTCATCACCTGCGACA
AGTGCGAGTGGCTGGACGGAAAGCACGTGGTCTTCGGCAAGGTCTTGGAC
CCGGCCTCCATGCTCACAGTCCGCAAGGTGGAGAACACGGACGTGAAACG
GCTCAAAGTGGAGGTGACTGAGTGCGGCGAATTGTAGATGGCCGACCCTG
CCGTTCTCGAGGCAGTCAACCGGGGCAATCCTGTTGTTTTCTTGGACGTC
TCCATCGCCAACCGCCCGGCCGGACGTATCAAAATGGAACTTTTCAAAGA
CGTAGTTCCCAAGACGGTAGAAAACTTCAGACAGTTCTGCACGGGGGAGT
ATCGTGAGACCGGATTGCCATTAGGCTACAAAGGATCGCCTTTCCACCGC
GTGATCAAAGACTTTATGATTCAG
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Synonyms
Publications