EWM20892.1, cds9779 (CDS) Nannochloropsis gaditana

Overview
NameEWM20892.1
Unique Namecds9779
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:164156..164392 -
Alignment locationKK037256.1:163612..163911 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20892.1
Productpeptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100201g3.6917.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:164156..164392 -
KK037256.1supercontigKK037256.1:163612..163911 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR020892Cyclophilin-type_PPIase_CS
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|585100843|gb|EWM20892.1| (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 368.237 bits (944), Expect = 4.883e-129
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:    1 MADPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDVKRLKVEVTECGEL 178
            MADPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDVKRLKVEVTECGEL
Sbjct:    1 MADPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDVKRLKVEVTECGEL 178          
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|553190073|ref|XP_005855120.1| (peptidyl-prolyl isomerase H (cyclophilin H) [Nannochloropsis gaditana CCMP526] >gi|422293939|gb|EKU21239.1| peptidyl-prolyl isomerase H (cyclophilin H) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 364.77 bits (935), Expect = 1.164e-127
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0
Query:    1 MADPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDVKRLKVEVTECGEL 178
            MAD AVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRE+GLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDVKRLKVEVTECGEL
Sbjct:    1 MADSAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRESGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDVKRLKVEVTECGEL 178          
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|299116363|emb|CBN74628.1| (peptidyl-prolyl cis-trans isomerase 11 [Ectocarpus siliculosus])

HSP 1 Score: 289.656 bits (740), Expect = 8.195e-98
Identity = 137/181 (75.69%), Postives = 150/181 (82.87%), Query Frame = 0
Query:    3 DPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDV-----KRLKVEVTECGEL 178
            DPA+ EAV RGNPVVF DV+I   PAGRIKMELFKD  PKT ENFR+FCTGE+R  G+P GYKG+PFHRVIKDFM+QGGDF+KGDG+G  SIYG+KFADENFDLRHTGPGLLSMANSGPNTNGCQFF+T  K  WLDG HVVFGKVLDPASMLTVRK+EN         RL V + ECGEL
Sbjct:    5 DPAIAEAVARGNPVVFFDVTIGGAPAGRIKMELFKDTCPKTAENFRRFCTGEHRHQGIPTGYKGAPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKAAWLDGLHVVFGKVLDPASMLTVRKIENVSTGVNNKPRLTVVIQECGEL 185          
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|813111264|ref|XP_012195150.1| (peptidyl-prolyl cis-trans isomerase H [Saprolegnia parasitica CBS 223.65] >gi|641540637|gb|KDO34419.1| peptidyl-prolyl cis-trans isomerase H [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 266.929 bits (681), Expect = 5.958e-89
Identity = 128/181 (70.72%), Postives = 145/181 (80.11%), Query Frame = 0
Query:    3 DPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDV-----KRLKVEVTECGEL 178
            DPA+ EAV RGNPVVF DV++ N P GRIKMELFK   PKTVENFRQFCTGEYR   +P GYKGS FHRVI DFMIQGGDF+KGDG+G  SIYGDKFADE+F  +HT PGLLSMANSG +TNGCQFFITC  C+WLDGKHVVFGK+LDPAS+L +RK+E+         +  V +TECGEL
Sbjct:    2 DPALSEAVRRGNPVVFFDVALGNAPLGRIKMELFKRECPKTVENFRQFCTGEYRRGDMPTGYKGSHFHRVIPDFMIQGGDFLKGDGTGRMSIYGDKFADESFAYKHTEPGLLSMANSGVDTNGCQFFITCAPCDWLDGKHVVFGKLLDPASLLVMRKIESVQTGAANKPKTPVTITECGEL 182          
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|301103378|ref|XP_002900775.1| (flagellar peptidyl-prolyl cis-trans isomerase [Phytophthora infestans T30-4] >gi|262101530|gb|EEY59582.1| flagellar peptidyl-prolyl cis-trans isomerase [Phytophthora infestans T30-4])

HSP 1 Score: 265.388 bits (677), Expect = 2.531e-88
Identity = 124/181 (68.51%), Postives = 148/181 (81.77%), Query Frame = 0
Query:    3 DPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDV-----KRLKVEVTECGEL 178
            D A+ EA+ RGNPVVF D+SI   P GR+++ELFK   P+TVENFRQFCTGEYR++ LP+GYKG PFHRVIKDFM+QGGDF+KGDG+G  SIYGDKF DE+F  +HT PGLLSMANSGP TNGCQFF+TC  C+WLDGKHVVFGKVLDPAS+L +RK+E+  V      +L + +TECGEL
Sbjct:    2 DAALSEALRRGNPVVFFDISIGGAPVGRLRLELFKRDCPRTVENFRQFCTGEYRKSELPVGYKGCPFHRVIKDFMVQGGDFLKGDGTGRISIYGDKFEDESFAHKHTEPGLLSMANSGPGTNGCQFFLTCAPCDWLDGKHVVFGKVLDPASLLLLRKMESVPVGPNSKPKLTITITECGEL 182          
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|669163152|ref|XP_008617138.1| (peptidyl-prolyl cis-trans isomerase H [Saprolegnia diclina VS20] >gi|530731129|gb|EQC29371.1| peptidyl-prolyl cis-trans isomerase H [Saprolegnia diclina VS20])

HSP 1 Score: 263.848 bits (673), Expect = 1.253e-87
Identity = 125/181 (69.06%), Postives = 144/181 (79.56%), Query Frame = 0
Query:    3 DPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDV-----KRLKVEVTECGEL 178
            DP + EA+ RGNPVVF DV++ N P GRIKMELFK   PKTVENFRQFCTGEYR   +P GYKGS FHR+I DFMIQGGDF+KGDG+G  SIYGDKFADE+F  +HT PGLLSMANSG +TNGCQFFITC  C+WLDGKHVVFGK+LDPAS+L +RK+E+         +  V +TECGEL
Sbjct:    2 DPVLSEALRRGNPVVFFDVALGNAPLGRIKMELFKRECPKTVENFRQFCTGEYRRGDMPTGYKGSHFHRIIPDFMIQGGDFLKGDGTGRMSIYGDKFADESFAYKHTEPGLLSMANSGVDTNGCQFFITCAPCDWLDGKHVVFGKLLDPASLLVMRKIESVQTGAANKPKTPVTITECGEL 182          
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|675174165|ref|XP_008895967.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|566013474|gb|ETI36385.1| hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|567950889|gb|ETK76596.1| hypothetical protein L915_17028 [Phytophthora parasitica] >gi|567979554|gb|ETL30032.1| hypothetical protein L916_16924 [Phytophthora parasitica] >gi|568009052|gb|ETL83264.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568038967|gb|ETM36481.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568103614|gb|ETN18271.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|570317139|gb|ETO65087.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570940955|gb|ETP06212.1| hypothetical protein F441_17363 [Phytophthora parasitica CJ01A1] >gi|570971206|gb|ETP34325.1| hypothetical protein F442_17345 [Phytophthora parasitica P10297])

HSP 1 Score: 262.307 bits (669), Expect = 4.323e-87
Identity = 123/181 (67.96%), Postives = 147/181 (81.22%), Query Frame = 0
Query:    3 DPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDV-----KRLKVEVTECGEL 178
            D A+ EA+ RGNPVVF D+SI   P GR+++ELFK   P+TVENFRQFCTGEYR++ LP+GYKG  FHRVIKDFM+QGGDF+KGDG+G  SIYGDKF DE+F  +HT PGLLSMANSGP TNGCQFF+TC  C+WLDGKHVVFGKVLDPAS+L +RK+E+  V      +L + +TECGEL
Sbjct:    2 DAALNEALRRGNPVVFFDISIGGAPVGRLRLELFKKDCPRTVENFRQFCTGEYRKSELPVGYKGCTFHRVIKDFMVQGGDFLKGDGTGRISIYGDKFEDESFAHKHTEPGLLSMANSGPGTNGCQFFLTCAPCDWLDGKHVVFGKVLDPASLLLLRKMESVPVGPNSKPKLSITITECGEL 182          
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|294886353|ref|XP_002771683.1| (cyclophilin, putative [Perkinsus marinus ATCC 50983] >gi|239875389|gb|EER03499.1| cyclophilin, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 260.381 bits (664), Expect = 3.579e-86
Identity = 124/182 (68.13%), Postives = 143/182 (78.57%), Query Frame = 0
Query:    2 ADPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDV-----KRLKVEVTECGEL 178
            A P      N  NPVVF+DVS+     GRI+MEL+KDV PKTVENFRQ CTGE++  G+P+GYKGS FHRVI+DFMIQGGDF+KGDG+G  SIYG+KF DENF L H  PGLLSMANSGPNTNGCQFFITC+KC+WLD KHVVFGKVLD  SM+TVRK+EN  V      +L + V+ECGEL
Sbjct:   11 AIPMHRPVRNPENPVVFMDVSVGGSAIGRIRMELYKDVAPKTVENFRQLCTGEFKLNGVPIGYKGSTFHRVIRDFMIQGGDFVKGDGTGSLSIYGEKFPDENFKLAHDSPGLLSMANSGPNTNGCQFFITCNKCDWLDSKHVVFGKVLDQQSMMTVRKIENAQVGENSRPKLPITVSECGEL 192          
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|294880891|ref|XP_002769177.1| (cyclophilin, putative [Perkinsus marinus ATCC 50983] >gi|239872380|gb|EER01895.1| cyclophilin, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 258.84 bits (660), Expect = 1.507e-85
Identity = 123/182 (67.58%), Postives = 142/182 (78.02%), Query Frame = 0
Query:    2 ADPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDV-----KRLKVEVTECGEL 178
            A P      N  NPVVF+DVS+     GRI+MEL+KDV PKTVENFRQ C GE++  G+P+GYKGS FHRVI+DFMIQGGDF+KGDG+G  SIYG+KF DENF L H  PGLLSMANSGPNTNGCQFFITC+KC+WLD KHVVFGKVLD  SM+TVRK+EN  V      +L + V+ECGEL
Sbjct:   14 AIPMHRPVRNPENPVVFMDVSVGGSAIGRIRMELYKDVAPKTVENFRQLCNGEFKLNGVPIGYKGSTFHRVIRDFMIQGGDFVKGDGTGSLSIYGEKFPDENFKLAHDSPGLLSMANSGPNTNGCQFFITCNKCDWLDSKHVVFGKVLDQQSMMTVRKIENAQVGENSRPKLPITVSECGEL 195          
BLAST of EWM20892.1 vs. NCBI_GenBank
Match: gi|673023730|ref|XP_008865826.1| (hypothetical protein H310_03647 [Aphanomyces invadans] >gi|574479054|gb|ETW06049.1| hypothetical protein H310_03647 [Aphanomyces invadans])

HSP 1 Score: 258.07 bits (658), Expect = 2.137e-85
Identity = 122/181 (67.40%), Postives = 145/181 (80.11%), Query Frame = 0
Query:    3 DPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENT-----DVKRLKVEVTECGEL 178
            DP + EA+ +GN VVF D+++   P GRI+MELFK+  PKTVENFRQFCTGEYR+  LP+GYKGS FHRVI+DFM+QGGDF+KGDG+G  SIYGDKFADENF  +HT  GL+SMANSGP TNGCQFFITC  CEWLDGKHVVFGK+LD AS+L +RK+E+      +  R  V +TECGEL
Sbjct:    2 DPLLAEALRKGNVVVFFDIALGGAPLGRIRMELFKNDCPKTVENFRQFCTGEYRKNELPVGYKGSTFHRVIQDFMVQGGDFLKGDGTGRMSIYGDKFADENFRHKHTEAGLVSMANSGPGTNGCQFFITCGACEWLDGKHVVFGKLLDSASLLVMRKIESVPTGQNNKPRTPVIITECGEL 182          
The following BLAST results are available for this feature:
BLAST of EWM20892.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100843|gb|EWM20892.1|4.883e-129100.00peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
gi|553190073|ref|XP_005855120.1|1.164e-12798.88peptidyl-prolyl isomerase H (cyclophilin H) [Nanno... [more]
gi|299116363|emb|CBN74628.1|8.195e-9875.69peptidyl-prolyl cis-trans isomerase 11 [Ectocarpus... [more]
gi|813111264|ref|XP_012195150.1|5.958e-8970.72peptidyl-prolyl cis-trans isomerase H [Saprolegnia... [more]
gi|301103378|ref|XP_002900775.1|2.531e-8868.51flagellar peptidyl-prolyl cis-trans isomerase [Phy... [more]
gi|669163152|ref|XP_008617138.1|1.253e-8769.06peptidyl-prolyl cis-trans isomerase H [Saprolegnia... [more]
gi|675174165|ref|XP_008895967.1|4.323e-8767.96hypothetical protein, variant 1 [Phytophthora para... [more]
gi|294886353|ref|XP_002771683.1|3.579e-8668.13cyclophilin, putative [Perkinsus marinus ATCC 5098... [more]
gi|294880891|ref|XP_002769177.1|1.507e-8567.58cyclophilin, putative [Perkinsus marinus ATCC 5098... [more]
gi|673023730|ref|XP_008865826.1|2.137e-8567.40hypothetical protein H310_03647 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9810rna9810Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications