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Properties
| Property Name | Value |
|---|
| Product | rhomboid protein 2 |
| Orig transcript id | gnl|cribi|Naga_100156g1.1716.mrna |
| Orig protein id | gnl|cribi|Naga_100156g1.1716 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037256.1 | supercontig | KK037256.1:155875..157017 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9805 ID=rna9805|Name=rna9805|organism=Nannochloropsis gaditana|type=mRNA|length=1694bp
GTTGTACAGGCGCCGACCCGGTGACCTGCACACTCTGTCGGGAGTCTCAC
CGTCAACATGCACAGTTTAGCGTTCATAGGTTATTAAGGAGGTCATGAGC
CCCCCGTTTGCCCCGGGAACGCCTGCGTCCTCGGTCCTGGCGCCCGAAGA
GAATGAGGAGGCCCTCGCCTTGTTTCAAGAGCTGCTGCGTTTCCCCACCA
TCTCTTATGCCGGCCCGACCAACGGAAGTTATCGCGCGTGCTGTGAGTGG
CTCGTGAAGACACTCACTGACCTAGGATTGAAAACACAGGTTTTGGAGGT
TGTGCCCAACAAACCAGTGGTGGTGGGGAGCTGGGAGGGCTCGGAGCCCG
CACTACCCTCGGTGTTGCTGAATTCCCACTATGACGTGGTACCTGCGTGC
TTGGACCAATGGGATACGGAGCCCTTTACGCCCGTGCGCAAAGGTGGCAA
AATATACGCCCGGGGGACCCAGGACATGAAATGCGTCTGTGCTCAGTATA
TCCTGGCGATCAAGCGTCTCAAGAAGCCCTCCATCGCCCCCGCGGCCTCC
TTCCAACCCCGGCGCAGCATCCATCTCTCCTTCGTGCCGGACGAGGAGAT
TGGAGGTGAGGACGGCATGGGCCGCTTTCTGGAGAGCGATCTGTTCAGAA
GCCTCCACGTGGGCCTGGCCTTAGACGAAGGTATTGCCAGTCCCGAGAAC
TCCTACAAATTTTTCTACAGCGAACGCTCGCCGCTGTGGATCCGAGTGCG
CGCCAAGGGCCTGACGGGGCACGGGTCTCGGTTCATCCCCGACACGGCCG
TCGAGAAGATCATGCACGTGGCCAATCAGGCACTGGCCTTCCGGGCTTCG
CAAGAGAAGCGGCTTGGGTACCCGCGTCCCGCGTCGAACGGGGAGGGCGA
AGGGGATGAAGGGAAAGCGGGTGGGCACGGGGGCTGCAAACATGCCTTGG
CCCTGAAGCTCGGGGACGTGGCCACTTTGAACTTGACGGTTCTGAAGGCG
GGCGTGAGCATGGACAACGGGCAGACCTTCGCCTACAACGTGATACCCCA
CGAGGCAGAGGCCGGTTTCGACATGCGCATTCCCCCCTCCATGCCCTTTG
CCGAGGTCCGGGCTTTGCTGGATGCCTGGACCGACCGGGCCGGCGTCACG
TGGGAGTTTGCACAGGAAGGAGGGGCGGACCCGTTGCTCACACACCACGC
AACATCCATCGATGGGGCGCAAAATCCCTGGTTCTCGGTGTTTCATGACG
CTCTGACCAGCCGCGGGGTGCCGGTGATCCCCGAGGTTTTCCCGGCCGCA
ACGGATGCCCGGTTCTTGCGGGCACGGGGAATTTCCGCGTTTGGATTTTC
GCCGATGCGGGAAACAGAGATGCTTTTGCACGAGCACAACGAGTATGTGA
GCGAGGAGGTATTTATGGAGGGCGTGGAGGTCTATGTGACCTTGGTGGAG
GCATTGAGCGGCGCGCCTAGGTTTGAGGGGGAAGGGGCGCAAGGGTGAGG
GGAGAAAGGAGAAGGGGAACGAGGACAGAGGGGCGACTCGATAAAGAGTT
TGATGACAAACTGCATGCGTATGAAAGATATGACGGCCTCAAGAAAAAAG
AGGAGCCAGCGTCGGCCTCGGACGTCGCGATATACCGTTCCACCTTTTTG
GGCTCACGTTAGCGTTGTCGTTTTCCTTTCCTCTCATTCCTCCC back to topprotein sequence of rna9805 >rna9805-protein ID=rna9805-protein|Name=rna9805|organism=Nannochloropsis gaditana|type=polypeptide|length=380bp
MFTGLVPKRVGRGVSFCRSRVRLRSLELVIQPPRRLFKSRLSCHPQASCE
KIRVARVRPIRKFAASLSVIHGNEGAKSSIPDSAPIHGGSMPSSPFLQDL
LLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAA
HSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVV
YFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEI
PSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGG
CFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVGETSGRTAA
PAVSILYPEGRTLGGGEGGGERNGGAVALV back to topmRNA from alignment at KK037256.1:155875..157017+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9805 ID=rna9805|Name=rna9805|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp|location=Sequence derived from alignment at KK037256.1:155875..157017+ (Nannochloropsis gaditana)
ATGTTCACAGGGCTTGTTCCCAAGCGTGTAGGTCGCGGTGTCAGCTTTTG
TCGATCGCGGGTACGACTTAGATCGCTAGAACTTGTCATCCAGCCTCCCC
GGCGTCTCTTCAAAAGTCGGCTCTCCTGTCACCCTCAAGCATCGTGTGAA
AAAATCCGCGTTGCACGGGTGCGTCCCATACGGAAGTTTGCAGCTTCGCT
ATCCGTAATACACGGGAACGAAGGAGCAAAGAGCTCCATCCCGGACAGTG
CTCCTATACACGGCGGGAGcatgccgtcctccccctttcttcaagacctc
cttctcaccccaGCCACGGCAGTCACCTGCGCCGTATTGGTCGTCATCTG
GTTTTTCCTTTGGAACCACCGCGTGTCCGCCGACAGGGTTGCATTTTCCT
ACACTAACGTggtggaaaaaaaggaatggtGGCGATGCTTGACCGCGGCC
CATTCACACCTGGACCTGGCGCACATCGGCTTCAACGTGATAGCCCTCTG
GGACTGCCGCTCCGCCGAGCTCTGGTTAGGCCACTGGCGCTTTGCAGTGC
agtccctcgccctcgtcgtgCTGTCTAAACTCATCATGCTCGCCGTCGTC
TACTTTGCCTCGTCCTGCCTGCCTGCACCCAGGAGCCGGGCGtggcaaga
aggagggtccGTAGGCTACAGCGCGGTGATATTCGCCTGGATGACCATAC
TGAGCTTCTATGGACCCCCCACGGTCAGTCTTTTGGGCCTGGTGGAGATT
CCGTCCTTGCTGGCCCCcgtggcctccctcctcatcactcaGCTGATTGT
CCGGAGGGCGAGCTTGGTGGGCCACGCCTCTGGGATCGTAGCGGGGCTGA
TCGCGGCCTTGGGGACCTTAGACTGGCTGAACAGTCCCTACTGGGGcggc
tgcttcctcttctggGTAGTGGCCATGCTGGCGATCAGCTTGAAGGCCAC
AACAGGGctccccctgccctgccTGGAGTACGCGGGCTGGGGGGcagtgg
gcggggaggagagggcgggggtgggggaaacGAGCGGGAGGACAGCGGCG
CCGGCCGTGTCGATCTTGTACCCGGAAGGACGTAcgctcgggggggggga
aggtggaggggaaaggaatggaggggcagTGGCCTTGGTATGA back to topCoding sequence (CDS) from alignment at KK037256.1:155875..157017+ >rna9805 ID=rna9805|Name=rna9805|organism=Nannochloropsis gaditana|type=CDS|length=1143bp|location=Sequence derived from alignment at KK037256.1:155875..157017+ (Nannochloropsis gaditana)
ATGTTCACAGGGCTTGTTCCCAAGCGTGTAGGTCGCGGTGTCAGCTTTTG
TCGATCGCGGGTACGACTTAGATCGCTAGAACTTGTCATCCAGCCTCCCC
GGCGTCTCTTCAAAAGTCGGCTCTCCTGTCACCCTCAAGCATCGTGTGAA
AAAATCCGCGTTGCACGGGTGCGTCCCATACGGAAGTTTGCAGCTTCGCT
ATCCGTAATACACGGGAACGAAGGAGCAAAGAGCTCCATCCCGGACAGTG
CTCCTATACACGGCGGGAGcatgccgtcctccccctttcttcaagacctc
cttctcaccccaGCCACGGCAGTCACCTGCGCCGTATTGGTCGTCATCTG
GTTTTTCCTTTGGAACCACCGCGTGTCCGCCGACAGGGTTGCATTTTCCT
ACACTAACGTggtggaaaaaaaggaatggtGGCGATGCTTGACCGCGGCC
CATTCACACCTGGACCTGGCGCACATCGGCTTCAACGTGATAGCCCTCTG
GGACTGCCGCTCCGCCGAGCTCTGGTTAGGCCACTGGCGCTTTGCAGTGC
agtccctcgccctcgtcgtgCTGTCTAAACTCATCATGCTCGCCGTCGTC
TACTTTGCCTCGTCCTGCCTGCCTGCACCCAGGAGCCGGGCGtggcaaga
aggagggtccGTAGGCTACAGCGCGGTGATATTCGCCTGGATGACCATAC
TGAGCTTCTATGGACCCCCCACGGTCAGTCTTTTGGGCCTGGTGGAGATT
CCGTCCTTGCTGGCCCCcgtggcctccctcctcatcactcaGCTGATTGT
CCGGAGGGCGAGCTTGGTGGGCCACGCCTCTGGGATCGTAGCGGGGCTGA
TCGCGGCCTTGGGGACCTTAGACTGGCTGAACAGTCCCTACTGGGGcggc
tgcttcctcttctggGTAGTGGCCATGCTGGCGATCAGCTTGAAGGCCAC
AACAGGGctccccctgccctgccTGGAGTACGCGGGCTGGGGGGcagtgg
gcggggaggagagggcgggggtgggggaaacGAGCGGGAGGACAGCGGCG
CCGGCCGTGTCGATCTTGTACCCGGAAGGACGTAcgctcgggggggggga
aggtggaggggaaaggaatggaggggcagTGGCCTTGGTATGA back to top
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