EWM20909.1, cds9774 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|585100864|gb|EWM20909.1| (rhomboid protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0 Query: 1 MFTGLVPKRVGRGVSFCRSRVRLRSLELVIQPPRRLFKSRLSCHPQASCEKIRVARVRPIRKFAASLSVIHGNEGAKSSIPDSAPIHGGSMPSSPFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVGETSGRTAAPAVSILYPEGRTLGGGEGGGERNGGAVALV 380 MFTGLVPKRVGRGVSFCRSRVRLRSLELVIQPPRRLFKSRLSCHPQASCEKIRVARVRPIRKFAASLSVIHGNEGAKSSIPDSAPIHGGSMPSSPFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVGETSGRTAAPAVSILYPEGRTLGGGEGGGERNGGAVALV Sbjct: 1 MFTGLVPKRVGRGVSFCRSRVRLRSLELVIQPPRRLFKSRLSCHPQASCEKIRVARVRPIRKFAASLSVIHGNEGAKSSIPDSAPIHGGSMPSSPFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVGETSGRTAAPAVSILYPEGRTLGGGEGGGERNGGAVALV 380
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|857979504|emb|CEO95023.1| (hypothetical protein PBRA_003836 [Plasmodiophora brassicae]) HSP 1 Score: 140.584 bits (353), Expect = 1.391e-35 Identity = 88/230 (38.26%), Postives = 128/230 (55.65%), Query Frame = 0 Query: 98 QDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDC-RSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGP-PTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCL 325 DL+ P T+ T AV V+W + WN R RVA SY +V +K+ WRC+T+ +SH + H+ FN+ W + E +G FA + +V+S + L + + P + + SVGYSAV+FAW T S P T+ LG+V P ++ P+ +LL TQL++ AS VGH SGIVAGL+ L W + Y+ C L W+V ++ S+K TT LP+P L Sbjct: 6 HDLVRWPLTSATVAVCFVLWVWHWNSRSDLARVASSYRRIVIEKQVWRCITSTYSHGSVLHLAFNMSMAWSQGQQFESQIGTVEFARVTTLFIVVSSCLSLGATWLLVHRMNQPGA---ADKQSVGYSAVLFAWYTAGSMQDPWTTLYFLGIVPTPRIVVPILALLFTQLLIANASFVGHLSGIVAGLLFGLDLFSWFTT-YFFLCSLTWIVIGMSWSVKTTTNLPVPFL 231
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|545369803|ref|XP_005649634.1| (rhomboid-domain-containing protein, partial [Coccomyxa subellipsoidea C-169] >gi|384251613|gb|EIE25090.1| rhomboid-domain-containing protein, partial [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 133.65 bits (335), Expect = 4.237e-33 Identity = 87/229 (37.99%), Postives = 123/229 (53.71%), Query Frame = 0 Query: 104 PATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGH-----WRFAVQ-SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326 PAT++ +L ++ ++ +H + V +Y V+K E WR LTA SH++L H+ FN+ LW E G+ R+ +Q SL L++ S L+ L + L R + +VGYSAVIF WMTILS G + S+ GL IP L P ASL++T +I+ RAS +GH SGIV G + A G DWL + +W G L W A+L L L +P L Sbjct: 9 PATSLVSTLLTAVYLYITSHGIGYADVGLNYDQAVQKLELWRVLTAQVSHVELLHLLFNLSTLWSLGVIEESNGNGAKGGTRYYLQTSLVLLIFSGLVCLLFYHVLGVVL---RREQYHTVTTVGYSAVIFGWMTILSRTGVASFSVFGLANIPMWLTPFASLVLTSIIIPRASFLGHLSGIVVGFMVASGVFDWL-TLWWLGSLLAWSGALLVFHLVRIERLEVPWLR 233
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|299470170|emb|CBN78198.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 134.035 bits (336), Expect = 8.224e-33 Identity = 87/249 (34.94%), Postives = 136/249 (54.62%), Query Frame = 0 Query: 95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSP-YWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVG 342 P + L PAT V AVLV ++ +W RVSA + SY N++ ++EWWR +TAA +H L H+ F++ +LW CR E LG W + + S VVL+++ F L R + S GYS V+FAW+ +LS ++G + V +L++ ++++R++S VGH +G+ AGL+ + G LD+ YW W +A+L SLKATT +P+P ++Y + G + GVG Sbjct: 46 PLSEQLPTYPATCVLSAVLVTVFLAMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHGGLLHLAFSISSLWSCRRIETELGSWGYLLASAHFVVLAEVFE---KMFMHVLLRTGRV---VDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVD---LSGRDDLGVG 285
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|727694844|gb|AIY60751.1| (rhomboid protein Ginbi_RBL13 [Ginkgo biloba]) HSP 1 Score: 129.798 bits (325), Expect = 1.935e-31 Identity = 82/238 (34.45%), Postives = 126/238 (52.94%), Query Frame = 0 Query: 95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQ-----SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326 P +L PAT+ A+ +WF++ + V SY +E + W R +T+A SH+ + H+ FN+ ALW E LGH VQ +L LV+LS L++L + + + ++ +VGYS V+F WMTIL+ P + + L G++ +P AP SL+ T +IV +AS +GH SGI+ G A G + +N+ YW L W++ SLK T+ L LP +E Sbjct: 4 PLFYQILEKPATSCIIALCSTVWFYIQKKNIGYGDVGLSYEAAIEGQHW-RLITSAFSHISILHLVFNMSALWSLGVVES-LGHMGLGVQFYLHYTLVLVILSGLLVLGTYHI---LIQRFKLDYFRRVTAVGYSCVVFGWMTILAVKQPSSKLDLFGVLSLPISFAPFESLVFTSIIVPQASFLGHLSGIIVGYAIAWGLIQGMNN-YWAVSMLGWIIVAFVFSLKRTSALELPFIE 235
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|388521227|gb|AFK48675.1| (unknown [Lotus japonicus]) HSP 1 Score: 129.413 bits (324), Expect = 2.334e-31 Identity = 84/237 (35.44%), Postives = 127/237 (53.59%), Query Frame = 0 Query: 95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAE----LWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326 P ++L PAT+V + VIWF++ + V SY +E + W R +T+A SH+ + H+ FN+ ALW E L LG + +L LV+LS +++LA+ + + + ++ +VGYS V+F WMTILS P + + L G + +P AP SL+ T +IV +AS +GH SGIV G A G + + S YW L W+V + +SLK + L L LE Sbjct: 4 PLFYEILEKPATSVLIGICSVIWFYIQKKNIGYSHVGLSYETAIEGQHW-RIITSAFSHISVIHLVFNMSALWSLGVVEQLDHLGLGVEYYLQYTLVLVILSGVLVLAMYHL---LIQRFKIEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIVVGYTIAWGLIHGM-SNYWALSLLGWIVLVFVLSLKRSGVLELNFLE 235
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|1150701352|ref|XP_020261471.1| (RHOMBOID-like protein 13 isoform X2 [Asparagus officinalis] >gi|1141991189|gb|ONK72409.1| uncharacterized protein A4U43_C04F19120 [Asparagus officinalis]) HSP 1 Score: 127.872 bits (320), Expect = 8.949e-31 Identity = 83/238 (34.87%), Postives = 128/238 (53.78%), Query Frame = 0 Query: 95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQ-----SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326 P + ++L PAT+ + IWF++ + V SY +E W R +T+A SH+ + H+ FN+ ALW E LGH V+ +L L+VLS ++++AV + + + ++ + GYS V+F WMTIL+ P + +SL G++ +P AP SL+ T +IV +AS VGH SGIV G A G + +N+ YW L WVV + +SLK + L L +E Sbjct: 4 PLIYEILEKPATSCIIGLCTAIWFYIQKKNIGYSNVGLSYDAAIEGHHW-RLITSAFSHVSVLHLVFNMSALWSLGVVE-QLGHMGLGVECYLQYTLVLIVLSGVLVIAVYHV---LIQKFKVEYFRRVTAAGYSCVVFGWMTILAVKQPSSKLSLFGVLSLPISFAPFESLIFTSIIVPQASFVGHLSGIVVGYSIAWGLIHGMNN-YWAIMMLGWVVLVFVLSLKRSGALDLSFIE 235
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|1150701350|ref|XP_020261470.1| (RHOMBOID-like protein 13 isoform X1 [Asparagus officinalis]) HSP 1 Score: 127.872 bits (320), Expect = 1.075e-30 Identity = 83/239 (34.73%), Postives = 128/239 (53.56%), Query Frame = 0 Query: 94 SPFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQ-----SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326 P + ++L PAT+ + IWF++ + V SY +E W R +T+A SH+ + H+ FN+ ALW E LGH V+ +L L+VLS ++++AV + + + ++ + GYS V+F WMTIL+ P + +SL G++ +P AP SL+ T +IV +AS VGH SGIV G A G + +N+ YW L WVV + +SLK + L L +E Sbjct: 18 KPLIYEILEKPATSCIIGLCTAIWFYIQKKNIGYSNVGLSYDAAIEGHHW-RLITSAFSHVSVLHLVFNMSALWSLGVVE-QLGHMGLGVECYLQYTLVLIVLSGVLVIAVYHV---LIQKFKVEYFRRVTAAGYSCVVFGWMTILAVKQPSSKLSLFGVLSLPISFAPFESLIFTSIIVPQASFVGHLSGIVVGYSIAWGLIHGMNN-YWAIMMLGWVVLVFVLSLKRSGALDLSFIE 250
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|593153773|ref|XP_007131940.1| (hypothetical protein PHAVU_011G053600g [Phaseolus vulgaris] >gi|561004940|gb|ESW03934.1| hypothetical protein PHAVU_011G053600g [Phaseolus vulgaris]) HSP 1 Score: 126.331 bits (316), Expect = 3.359e-30 Identity = 82/238 (34.45%), Postives = 126/238 (52.94%), Query Frame = 0 Query: 95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQ-----SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326 P ++L PAT+ + +IWF++ + V SY VE +WR +T+A SH+ + H+ FN+ ALW E LGH V+ +L LV++S +++LA+ + + + ++ +VGYS V+F WMTILS P + + L G + +P AP SL+ T +IV +AS +GH SGIV G A G + + S YW L W++ + SLK + L L LE Sbjct: 4 PLFYEILEKPATSCMIGICSMIWFYIQKKNIGYSHVGLSYETAVEG-HYWRIITSAFSHISVIHLVFNMSALWSLGVIE-QLGHLGLGVEYYLQYTLVLVIVSGVLVLAMYHM---LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFIGHLSGIVVGYAIAWGLIHGM-SNYWALSLLGWILLVFVFSLKRSGALDLSFLE 235
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|1117566143|ref|XP_019454144.1| (PREDICTED: RHOMBOID-like protein 13 [Lupinus angustifolius] >gi|1102706781|gb|OIW05711.1| hypothetical protein TanjilG_23497 [Lupinus angustifolius]) HSP 1 Score: 126.331 bits (316), Expect = 3.528e-30 Identity = 82/237 (34.60%), Postives = 125/237 (52.74%), Query Frame = 0 Query: 95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAE----LWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326 P ++L PAT+ + IWF++ + V SY + +E +WR +T+A SH+ + H+ FN+ ALW E + LG + +L +VVLS +++LA+ + + ++ +VGYS V+F WMTILS P T + L G +P AP SL++T +IV +AS +GH SGIV G A G + +NS YW L W+ + A SLK + + L LE Sbjct: 4 PLFYEILEKPATSCIIGICSAIWFYIQKKNIGYSHVGLSYESAIEG-HYWRIITSAFSHISVIHLVFNISALWSLGVVEQLDHMGLGIGYYLQYTLVMVVLSGVLVLAIYHL---LIQRFNIEYFRRVTAVGYSCVVFGWMTILSVKQPSTKLELFGFFSLPISFAPFESLVLTSIIVPQASFIGHLSGIVVGYAIAWGLIHGMNS-YWLLSLLGWIAVVFAWSLKKSGAVDLNFLE 235 The following BLAST results are available for this feature:
BLAST of EWM20909.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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