EWM20909.1, cds9774 (CDS) Nannochloropsis gaditana

Overview
NameEWM20909.1
Unique Namecds9774
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:155875..157017 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20909.1
Productrhomboid protein 2
Orig transcript idgnl|cribi|Naga_100156g1.1716.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:155875..157017 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR022764Peptidase_S54_rhomboid_dom
Homology
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|585100864|gb|EWM20909.1| (rhomboid protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0
Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query:    1 MFTGLVPKRVGRGVSFCRSRVRLRSLELVIQPPRRLFKSRLSCHPQASCEKIRVARVRPIRKFAASLSVIHGNEGAKSSIPDSAPIHGGSMPSSPFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVGETSGRTAAPAVSILYPEGRTLGGGEGGGERNGGAVALV 380
            MFTGLVPKRVGRGVSFCRSRVRLRSLELVIQPPRRLFKSRLSCHPQASCEKIRVARVRPIRKFAASLSVIHGNEGAKSSIPDSAPIHGGSMPSSPFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVGETSGRTAAPAVSILYPEGRTLGGGEGGGERNGGAVALV
Sbjct:    1 MFTGLVPKRVGRGVSFCRSRVRLRSLELVIQPPRRLFKSRLSCHPQASCEKIRVARVRPIRKFAASLSVIHGNEGAKSSIPDSAPIHGGSMPSSPFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVGETSGRTAAPAVSILYPEGRTLGGGEGGGERNGGAVALV 380          
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|857979504|emb|CEO95023.1| (hypothetical protein PBRA_003836 [Plasmodiophora brassicae])

HSP 1 Score: 140.584 bits (353), Expect = 1.391e-35
Identity = 88/230 (38.26%), Postives = 128/230 (55.65%), Query Frame = 0
Query:   98 QDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDC-RSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGP-PTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCL 325
             DL+  P T+ T AV  V+W + WN R    RVA SY  +V +K+ WRC+T+ +SH  + H+ FN+   W   +  E  +G   FA  +   +V+S  + L   +     +  P +    +  SVGYSAV+FAW T  S   P  T+  LG+V  P ++ P+ +LL TQL++  AS VGH SGIVAGL+  L    W  + Y+  C L W+V  ++ S+K TT LP+P L
Sbjct:    6 HDLVRWPLTSATVAVCFVLWVWHWNSRSDLARVASSYRRIVIEKQVWRCITSTYSHGSVLHLAFNMSMAWSQGQQFESQIGTVEFARVTTLFIVVSSCLSLGATWLLVHRMNQPGA---ADKQSVGYSAVLFAWYTAGSMQDPWTTLYFLGIVPTPRIVVPILALLFTQLLIANASFVGHLSGIVAGLLFGLDLFSWFTT-YFFLCSLTWIVIGMSWSVKTTTNLPVPFL 231          
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|545369803|ref|XP_005649634.1| (rhomboid-domain-containing protein, partial [Coccomyxa subellipsoidea C-169] >gi|384251613|gb|EIE25090.1| rhomboid-domain-containing protein, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 133.65 bits (335), Expect = 4.237e-33
Identity = 87/229 (37.99%), Postives = 123/229 (53.71%), Query Frame = 0
Query:  104 PATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGH-----WRFAVQ-SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326
            PAT++   +L  ++ ++ +H +    V  +Y   V+K E WR LTA  SH++L H+ FN+  LW     E   G+      R+ +Q SL L++ S L+ L   +     L   R   +    +VGYSAVIF WMTILS  G  + S+ GL  IP  L P ASL++T +I+ RAS +GH SGIV G + A G  DWL + +W G  L W  A+L   L     L +P L 
Sbjct:    9 PATSLVSTLLTAVYLYITSHGIGYADVGLNYDQAVQKLELWRVLTAQVSHVELLHLLFNLSTLWSLGVIEESNGNGAKGGTRYYLQTSLVLLIFSGLVCLLFYHVLGVVL---RREQYHTVTTVGYSAVIFGWMTILSRTGVASFSVFGLANIPMWLTPFASLVLTSIIIPRASFLGHLSGIVVGFMVASGVFDWL-TLWWLGSLLAWSGALLVFHLVRIERLEVPWLR 233          
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|299470170|emb|CBN78198.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 134.035 bits (336), Expect = 8.224e-33
Identity = 87/249 (34.94%), Postives = 136/249 (54.62%), Query Frame = 0
Query:   95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSP-YWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVG 342
            P  + L   PAT V  AVLV ++  +W  RVSA  +  SY N++ ++EWWR +TAA +H  L H+ F++ +LW CR  E  LG W + + S   VVL+++       F    L   R     +  S GYS V+FAW+ +LS        ++G        + V +L++ ++++R++S VGH +G+ AGL+ + G LD+     YW      W +A+L  SLKATT +P+P ++Y     + G +  GVG
Sbjct:   46 PLSEQLPTYPATCVLSAVLVTVFLAMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHGGLLHLAFSISSLWSCRRIETELGSWGYLLASAHFVVLAEVFE---KMFMHVLLRTGRV---VDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVD---LSGRDDLGVG 285          
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|727694844|gb|AIY60751.1| (rhomboid protein Ginbi_RBL13 [Ginkgo biloba])

HSP 1 Score: 129.798 bits (325), Expect = 1.935e-31
Identity = 82/238 (34.45%), Postives = 126/238 (52.94%), Query Frame = 0
Query:   95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQ-----SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326
            P    +L  PAT+   A+   +WF++    +    V  SY   +E + W R +T+A SH+ + H+ FN+ ALW     E  LGH    VQ     +L LV+LS L++L   +     +   +   ++   +VGYS V+F WMTIL+   P + + L G++ +P   AP  SL+ T +IV +AS +GH SGI+ G   A G +  +N+ YW    L W++     SLK T+ L LP +E
Sbjct:    4 PLFYQILEKPATSCIIALCSTVWFYIQKKNIGYGDVGLSYEAAIEGQHW-RLITSAFSHISILHLVFNMSALWSLGVVES-LGHMGLGVQFYLHYTLVLVILSGLLVLGTYHI---LIQRFKLDYFRRVTAVGYSCVVFGWMTILAVKQPSSKLDLFGVLSLPISFAPFESLVFTSIIVPQASFLGHLSGIIVGYAIAWGLIQGMNN-YWAVSMLGWIIVAFVFSLKRTSALELPFIE 235          
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|388521227|gb|AFK48675.1| (unknown [Lotus japonicus])

HSP 1 Score: 129.413 bits (324), Expect = 2.334e-31
Identity = 84/237 (35.44%), Postives = 127/237 (53.59%), Query Frame = 0
Query:   95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAE----LWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326
            P   ++L  PAT+V   +  VIWF++    +    V  SY   +E + W R +T+A SH+ + H+ FN+ ALW     E    L LG   +   +L LV+LS +++LA+ +     +   +   ++   +VGYS V+F WMTILS   P + + L G + +P   AP  SL+ T +IV +AS +GH SGIV G   A G +  + S YW    L W+V +  +SLK +  L L  LE
Sbjct:    4 PLFYEILEKPATSVLIGICSVIWFYIQKKNIGYSHVGLSYETAIEGQHW-RIITSAFSHISVIHLVFNMSALWSLGVVEQLDHLGLGVEYYLQYTLVLVILSGVLVLAMYHL---LIQRFKIEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIVVGYTIAWGLIHGM-SNYWALSLLGWIVLVFVLSLKRSGVLELNFLE 235          
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|1150701352|ref|XP_020261471.1| (RHOMBOID-like protein 13 isoform X2 [Asparagus officinalis] >gi|1141991189|gb|ONK72409.1| uncharacterized protein A4U43_C04F19120 [Asparagus officinalis])

HSP 1 Score: 127.872 bits (320), Expect = 8.949e-31
Identity = 83/238 (34.87%), Postives = 128/238 (53.78%), Query Frame = 0
Query:   95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQ-----SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326
            P + ++L  PAT+    +   IWF++    +    V  SY   +E   W R +T+A SH+ + H+ FN+ ALW     E  LGH    V+     +L L+VLS ++++AV +     +   +   ++   + GYS V+F WMTIL+   P + +SL G++ +P   AP  SL+ T +IV +AS VGH SGIV G   A G +  +N+ YW    L WVV +  +SLK +  L L  +E
Sbjct:    4 PLIYEILEKPATSCIIGLCTAIWFYIQKKNIGYSNVGLSYDAAIEGHHW-RLITSAFSHVSVLHLVFNMSALWSLGVVE-QLGHMGLGVECYLQYTLVLIVLSGVLVIAVYHV---LIQKFKVEYFRRVTAAGYSCVVFGWMTILAVKQPSSKLSLFGVLSLPISFAPFESLIFTSIIVPQASFVGHLSGIVVGYSIAWGLIHGMNN-YWAIMMLGWVVLVFVLSLKRSGALDLSFIE 235          
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|1150701350|ref|XP_020261470.1| (RHOMBOID-like protein 13 isoform X1 [Asparagus officinalis])

HSP 1 Score: 127.872 bits (320), Expect = 1.075e-30
Identity = 83/239 (34.73%), Postives = 128/239 (53.56%), Query Frame = 0
Query:   94 SPFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQ-----SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326
             P + ++L  PAT+    +   IWF++    +    V  SY   +E   W R +T+A SH+ + H+ FN+ ALW     E  LGH    V+     +L L+VLS ++++AV +     +   +   ++   + GYS V+F WMTIL+   P + +SL G++ +P   AP  SL+ T +IV +AS VGH SGIV G   A G +  +N+ YW    L WVV +  +SLK +  L L  +E
Sbjct:   18 KPLIYEILEKPATSCIIGLCTAIWFYIQKKNIGYSNVGLSYDAAIEGHHW-RLITSAFSHVSVLHLVFNMSALWSLGVVE-QLGHMGLGVECYLQYTLVLIVLSGVLVIAVYHV---LIQKFKVEYFRRVTAAGYSCVVFGWMTILAVKQPSSKLSLFGVLSLPISFAPFESLIFTSIIVPQASFVGHLSGIVVGYSIAWGLIHGMNN-YWAIMMLGWVVLVFVLSLKRSGALDLSFIE 250          
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|593153773|ref|XP_007131940.1| (hypothetical protein PHAVU_011G053600g [Phaseolus vulgaris] >gi|561004940|gb|ESW03934.1| hypothetical protein PHAVU_011G053600g [Phaseolus vulgaris])

HSP 1 Score: 126.331 bits (316), Expect = 3.359e-30
Identity = 82/238 (34.45%), Postives = 126/238 (52.94%), Query Frame = 0
Query:   95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQ-----SLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326
            P   ++L  PAT+    +  +IWF++    +    V  SY   VE   +WR +T+A SH+ + H+ FN+ ALW     E  LGH    V+     +L LV++S +++LA+ +     +   +   ++   +VGYS V+F WMTILS   P + + L G + +P   AP  SL+ T +IV +AS +GH SGIV G   A G +  + S YW    L W++ +   SLK +  L L  LE
Sbjct:    4 PLFYEILEKPATSCMIGICSMIWFYIQKKNIGYSHVGLSYETAVEG-HYWRIITSAFSHISVIHLVFNMSALWSLGVIE-QLGHLGLGVEYYLQYTLVLVIVSGVLVLAMYHM---LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFIGHLSGIVVGYAIAWGLIHGM-SNYWALSLLGWILLVFVFSLKRSGALDLSFLE 235          
BLAST of EWM20909.1 vs. NCBI_GenBank
Match: gi|1117566143|ref|XP_019454144.1| (PREDICTED: RHOMBOID-like protein 13 [Lupinus angustifolius] >gi|1102706781|gb|OIW05711.1| hypothetical protein TanjilG_23497 [Lupinus angustifolius])

HSP 1 Score: 126.331 bits (316), Expect = 3.528e-30
Identity = 82/237 (34.60%), Postives = 125/237 (52.74%), Query Frame = 0
Query:   95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAE----LWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPT-VSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLE 326
            P   ++L  PAT+    +   IWF++    +    V  SY + +E   +WR +T+A SH+ + H+ FN+ ALW     E    + LG   +   +L +VVLS +++LA+ +     +       ++   +VGYS V+F WMTILS   P T + L G   +P   AP  SL++T +IV +AS +GH SGIV G   A G +  +NS YW    L W+  + A SLK +  + L  LE
Sbjct:    4 PLFYEILEKPATSCIIGICSAIWFYIQKKNIGYSHVGLSYESAIEG-HYWRIITSAFSHISVIHLVFNISALWSLGVVEQLDHMGLGIGYYLQYTLVMVVLSGVLVLAIYHL---LIQRFNIEYFRRVTAVGYSCVVFGWMTILSVKQPSTKLELFGFFSLPISFAPFESLVLTSIIVPQASFIGHLSGIVVGYAIAWGLIHGMNS-YWLLSLLGWIAVVFAWSLKKSGAVDLNFLE 235          
The following BLAST results are available for this feature:
BLAST of EWM20909.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100864|gb|EWM20909.1|0.000e+0100.00rhomboid protein 2 [Nannochloropsis gaditana][more]
gi|857979504|emb|CEO95023.1|1.391e-3538.26hypothetical protein PBRA_003836 [Plasmodiophora b... [more]
gi|545369803|ref|XP_005649634.1|4.237e-3337.99rhomboid-domain-containing protein, partial [Cocco... [more]
gi|299470170|emb|CBN78198.1|8.224e-3334.94conserved unknown protein [Ectocarpus siliculosus][more]
gi|727694844|gb|AIY60751.1|1.935e-3134.45rhomboid protein Ginbi_RBL13 [Ginkgo biloba][more]
gi|388521227|gb|AFK48675.1|2.334e-3135.44unknown [Lotus japonicus][more]
gi|1150701352|ref|XP_020261471.1|8.949e-3134.87RHOMBOID-like protein 13 isoform X2 [Asparagus off... [more]
gi|1150701350|ref|XP_020261470.1|1.075e-3034.73RHOMBOID-like protein 13 isoform X1 [Asparagus off... [more]
gi|593153773|ref|XP_007131940.1|3.359e-3034.45hypothetical protein PHAVU_011G053600g [Phaseolus ... [more]
gi|1117566143|ref|XP_019454144.1|3.528e-3034.60PREDICTED: RHOMBOID-like protein 13 [Lupinus angus... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9805rna9805Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications