rna9798, rna9798 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9798
Unique Name	rna9798
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1678
Alignment location	KK037256.1:139692..141560 +

Link to JBrowse

Properties


Property Name	Value
Product	Ribosomal protein L7A/L8
Orig transcript id	gnl\|cribi\|Naga_100156g9.1713.mrna
Orig protein id	gnl\|cribi\|Naga_100156g9.1713
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:139692..141560 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100156g9	gene9513	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9798	rna9798-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20906.1	cds9767	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:139692..141560+
coding sequence from alignment at KK037256.1:139692..141560+

mRNA sequence

>rna9798 ID=rna9798|Name=rna9798|organism=Nannochloropsis gaditana|type=mRNA|length=1678bp
TTAGTTCTCTGTGTGGTCTTCACTGCGTTATTTCCTCCTCTTCCCTTCTA
CATAGGTGGCGCGCGCGCGGTTTTAGGGAGGGAGACAGGCACTCCCAGCG
TCTCGGCCTCACCAAGGTCATTGCCAGGGCCAGTATGGGCAAGATGATTC
CGGCGTCCGATCTTGTCACGACCCTCTTTGAGGTTGCCCGCAAGTTCTTG
CTGATGCAGTACCCGTACGAGTTCGAGGTCTGTCTCTTTGCTTTCTGTTT
GGGTGCCTCCATGCGGGTGCGGCCTTCCGCGCAATATTCCTGGCTCCACC
ATTTGGTCCTGGTCTTCCTGACGGGCTTTGCGGGAGGCACGATCATCCCC
ATGTTCTTCGGGCGCACCCCGGTTCTCTTCGTGAACGACCTCCTCGTGCC
CCTGGTCTGCCTCTCCTGGTACCTGGTGCACTACACGCGCGTCGGCGGCC
TCCTTCAGACCTCCCCCTGCAAGTTCCTCCTGGTGGCCCTCTTCGAAATC
TACCGGGCGGCCTCCATCCTCAAGACGGTGGGCCAGGCGACCACGGACAT
TGCGCCCGGGCCCTACTACCCCATCGCCGTGGTCGGTCCCGTTCTCGTTG
GGACCCTCTCTGGGAGCATGGGTGCCTTCATGCCCCCCGACCGAGGCATT
TCATTCCTGGCCACTGGCGTGCCCCTGAATTTGCAGACCACGCTCCTCGC
CTGCCTCTTCTACCACCTGGCCGCCCACGACCCGGCCCTCCCCGGGGCCT
ACCTGCGCGGCCTCCCCGCCCTGCGCCTGAGCGACCCAGAGAACCTCAAG
GCGCTCACCGTCTTCTTCTTCGTGGCCATGGCATTCCTCTCCCTTGTCAA
GGGCCCCGACTACAACCCCTTCACCCCGGTCCACACGCTCCTCTACCAAG
TGCTGGGCATCCCCCACTCCCCCGCCACCCTGGAACGCCTCAAGTCCACG
CGCCGCGCCCCCAACGCCGGCGACCACGGCCCCAAGCCCGCGGTAAAGGC
CTCGGGACGCCTACTGGGAGCGAGCAAGGTGCTCGTCCCCCTCTTGGCCA
TGCTCGCCTACCAGCTCCAGGGCAAGCTCGCGCCTCGCACCACCCTCCCC
GTCGGGGGGCGCCTACACCCGGGTGAGTACATCGCGGCGTGTGGCCCCCT
CCAGTCGTTCACTGGGCACTGCAAGCAGCACTTTTTGACTCTGGATGCTG
AAGGGCGGCTCAGCCTCTATCGTGGGGCCTCGCCCAAGGACGCTGGCAGC
CACCGCCTCTGGCAATCCAAAGCTACCCGGAGGAGTGGGAAACCCACGGA
GGCCGGCCTCTTTGCGGAGCTGAATGAAGGGGGTGTGCTGGTCCTAAAGC
ATACGGCGGGGGGCGACGCCACGTATTGGACGTCGTCCTCGCGCAAGACT
GAGGGGGAAAAGAAGGGACAGGACGCAGGGAGGCTGCATCTGCGGGTCCT
GGAGAGGGGCGCATTTGGCATCTTTGAGGGATCTACGCCTTTGTGGACCT
CAGACGGAATTCTGCGCAAGGACACGGCATAGATACGGGAGCCGGTAACA
AGTGTACAGGGGGCTGTGGGAGAAAAACGGTTTGGCGCGGGTGCCTGCCA
CGGAGGGGGGGGAAGAGAGGCAAAGCGAAATCCGAGCGCCTATTGAATAA
AAAAGTATCGACAAAGCTGGAGAAAATA

protein sequence of rna9798

>rna9798-protein ID=rna9798-protein|Name=rna9798|organism=Nannochloropsis gaditana|type=polypeptide|length=255bp
MAPKKVAKKPAKKAAPKANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPR
YVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVE
KRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAH
DVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARK
EDKATFEKMCAEFKLEFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELA
KKAAF

mRNA from alignment at KK037256.1:139692..141560+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9798 ID=rna9798|Name=rna9798|organism=Nannochloropsis gaditana|type=mRNA|length=1869bp|location=Sequence derived from alignment at KK037256.1:139692..141560+ (Nannochloropsis gaditana)
ACGTTGGAATCCTTTTTCTGTCAATGAGACGAAAATGATTAAGTATGTTT
GAAGTCTTAGGCTGCCGAATGGCTCGGGCGTTCCCCGCCGCTCCTTCTCG
AGTCTCGCAACCCAACACTTTTCTTTCTTACGCAATGCGTTCACcgcccc
tcgttccctctttATACCCGTTCTTTCCCGTTCGATCGACAAACAGGGGA
GTCACATAGGCTTTGTGGGTGCGTTTAACCAGAGGTCCCGATATTAATGG
TAAGTGACTTGCTCCATACCGATCGAGCGGATGGGTGGGAGGCCATGGCG
ATGCGGAGAGGAGCGAAGAAAACTTTGTGAAGTCAAAGTCTGCAGTTTAA
TTGTGCATGATCACTCTGCCTTTCATATCGTCGATGTCAATCATGAAATG
AGGCATTCGAATGGGAAATGAGGGTTGGAAGCAGTGACTGTGGCAGGAAA
ACAAGCGTGGGGGCACAAGAAGGCAGAGGTCATGCGATTTGGTGCCATAG
GCGCACATAGCACCTCGCACAGTCTTGTTCTCACACATATTGTCCCCGTA
CATGCCTTTTGTATGCCTCAGGCTCCCAAGAAAGTCGCCAAGAAGCCCGC
TAAGAAGGCGGCCCCCAAGGCAAACCCTCTCTTCGCCGCAGAGCCCCGAA
GCTTCCGCATCGGGGGGGCCATCCGGGTAAGTCAATGCCTCCGGGGGTGT
ATGCCCGTGGAATGGATCACGAAAGCAGGGCGAAATGAAGTGTATGTCTG
TACGGCGTACTGGGTGGTCTTAGGGCTGAGGCAGGGGTGGTTGGTAACAT
TATCTTCTTGCATGTGCGACTGTGCTCGTTCGCAGTCTTCAGACATTTCT
GCTTGGAGTTCCCCTTTGACCACGCTCGTCGAATTGGTTGTGGCTTGCTC
ATTCACTTTGGACTCACACGTGTCCCCCCGTATCTCTCGTCACTCGTCTC
TCGGACAGCCCAAGGGTCGTGACCTCTCCCGCTTTGTCAAGTGGCCTCGG
TATGTCCGCATCCAGCGACAACGCAAGATTCTGTACCAGCGCCTCAAGGT
GCCCCCTGCGATCAACCAGTTCTCCAAGGCACTGGACAAGAACCAGGCCA
CCGAGCTCTTCAAGCTCCTGGCCAAGTACCGCCCAGAGAGCAAGGTAGAG
AAGCGCGAGCGTCTCAAGCAACTGGCGGCAGCCAAGGCGAGTGGGGGAGA
GACCCCAGCGCCTGCCAAGCAGACGGTCATCAAGTATGGTCTGAAGCATG
TGACCGAGCTGATTGAGGCCAAGAAGGTCAAGTTCGTGGCCATCGCCCAC
GACGTGAACCCTATCGAGCTTGTGGTCTGGATCCCTGCCCTCTGCCGCAA
GCAAGGCATCCCCTACGCCAttgtgaaagggaaggcgcGTCTGGGAGCTC
TGGTCCACAAGAAGAACGCGGCGGTAgtggcgttggaggaggcacgCAAG
GAGGATAAGGCCACCTTCGAGAAGATGTGTGCAGAATTCAAGTTGGAGTT
CAATGATAAGAAGGAGCGTACTTGGGGTGGGGGTATCATGGGTTTGAAGA
CGCAGAAGCGATTAGAGATCCGTCAgcgggccgtggaggccgagctcgCA
AAGAAAGCTGCCTTCTAATCGGGTCGCGGGCGATATGTGGTCGGGTGGTA
GGCGGGAAGTGCTCCTGACTTCTTACCAGACGCGCGTTGAGACGAGCAGA
CGATATCAGAGGGTCCACAAAGTGTTGGGAGGTTCACGTATCAATCCAGA
GTGGCAGTCCTTTTCGCCTACGTGTGAAGATCACGGTAACTGGGAAAGGG
CTCTTTGAAAGGAAATGGAGTACGGAAAGTCTGCCTTGGTTGCGTTCAAT
TTTGTTCTTTTTAAAGTGA

Coding sequence (CDS) from alignment at KK037256.1:139692..141560+

>rna9798 ID=rna9798|Name=rna9798|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at KK037256.1:139692..141560+ (Nannochloropsis gaditana)
ATGGCTCCCAAGAAAGTCGCCAAGAAGCCCGCTAAGAAGGCGGCCCCCAA
GGCAAACCCTCTCTTCGCCGCAGAGCCCCGAAGCTTCCGCATCGGGGGGG
CCATCCGGCCCAAGGGTCGTGACCTCTCCCGCTTTGTCAAGTGGCCTCGG
TATGTCCGCATCCAGCGACAACGCAAGATTCTGTACCAGCGCCTCAAGGT
GCCCCCTGCGATCAACCAGTTCTCCAAGGCACTGGACAAGAACCAGGCCA
CCGAGCTCTTCAAGCTCCTGGCCAAGTACCGCCCAGAGAGCAAGGTAGAG
AAGCGCGAGCGTCTCAAGCAACTGGCGGCAGCCAAGGCGAGTGGGGGAGA
GACCCCAGCGCCTGCCAAGCAGACGGTCATCAAGTATGGTCTGAAGCATG
TGACCGAGCTGATTGAGGCCAAGAAGGTCAAGTTCGTGGCCATCGCCCAC
GACGTGAACCCTATCGAGCTTGTGGTCTGGATCCCTGCCCTCTGCCGCAA
GCAAGGCATCCCCTACGCCAttgtgaaagggaaggcgcGTCTGGGAGCTC
TGGTCCACAAGAAGAACGCGGCGGTAgtggcgttggaggaggcacgCAAG
GAGGATAAGGCCACCTTCGAGAAGATGTGTGCAGAATTCAAGTTGGAGTT
CAATGATAAGAAGGAGCGTACTTGGGGTGGGGGTATCATGGGTTTGAAGA
CGCAGAAGCGATTAGAGATCCGTCAgcgggccgtggaggccgagctcgCA
AAGAAAGCTGCCTTCTAAATGGCTCCCAAGAAAGTCGCCAAGAAGCCCGC
TAAGAAGGCGGCCCCCAAGGCAAACCCTCTCTTCGCCGCAGAGCCCCGAA
GCTTCCGCATCGGGGGGGCCATCCGGCCCAAGGGTCGTGACCTCTCCCGC
TTTGTCAAGTGGCCTCGGTATGTCCGCATCCAGCGACAACGCAAGATTCT
GTACCAGCGCCTCAAGGTGCCCCCTGCGATCAACCAGTTCTCCAAGGCAC
TGGACAAGAACCAGGCCACCGAGCTCTTCAAGCTCCTGGCCAAGTACCGC
CCAGAGAGCAAGGTAGAGAAGCGCGAGCGTCTCAAGCAACTGGCGGCAGC
CAAGGCGAGTGGGGGAGAGACCCCAGCGCCTGCCAAGCAGACGGTCATCA
AGTATGGTCTGAAGCATGTGACCGAGCTGATTGAGGCCAAGAAGGTCAAG
TTCGTGGCCATCGCCCACGACGTGAACCCTATCGAGCTTGTGGTCTGGAT
CCCTGCCCTCTGCCGCAAGCAAGGCATCCCCTACGCCAttgtgaaaggga
aggcgcGTCTGGGAGCTCTGGTCCACAAGAAGAACGCGGCGGTAgtggcg
ttggaggaggcacgCAAGGAGGATAAGGCCACCTTCGAGAAGATGTGTGC
AGAATTCAAGTTGGAGTTCAATGATAAGAAGGAGCGTACTTGGGGTGGGG
GTATCATGGGTTTGAAGACGCAGAAGCGATTAGAGATCCGTCAgcgggcc
gtggaggccgagctcgCAAAGAAAGCTGCCTTCTAAATGGCTCCCAAGAA
AGTCGCCAAGAAGCCCGCTAAGAAGGCGGCCCCCAAGGCAAACCCTCTCT
TCGCCGCAGAGCCCCGAAGCTTCCGCATCGGGGGGGCCATCCGGCCCAAG
GGTCGTGACCTCTCCCGCTTTGTCAAGTGGCCTCGGTATGTCCGCATCCA
GCGACAACGCAAGATTCTGTACCAGCGCCTCAAGGTGCCCCCTGCGATCA
ACCAGTTCTCCAAGGCACTGGACAAGAACCAGGCCACCGAGCTCTTCAAG
CTCCTGGCCAAGTACCGCCCAGAGAGCAAGGTAGAGAAGCGCGAGCGTCT
CAAGCAACTGGCGGCAGCCAAGGCGAGTGGGGGAGAGACCCCAGCGCCTG
CCAAGCAGACGGTCATCAAGTATGGTCTGAAGCATGTGACCGAGCTGATT
GAGGCCAAGAAGGTCAAGTTCGTGGCCATCGCCCACGACGTGAACCCTAT
CGAGCTTGTGGTCTGGATCCCTGCCCTCTGCCGCAAGCAAGGCATCCCCT
ACGCCAttgtgaaagggaaggcgcGTCTGGGAGCTCTGGTCCACAAGAAG
AACGCGGCGGTAgtggcgttggaggaggcacgCAAGGAGGATAAGGCCAC
CTTCGAGAAGATGTGTGCAGAATTCAAGTTGGAGTTCAATGATAAGAAGG
AGCGTACTTGGGGTGGGGGTATCATGGGTTTGAAGACGCAGAAGCGATTA
GAGATCCGTCAgcgggccgtggaggccgagctcgCAAAGAAAGCTGCCTT
CTAA

Synonyms

Publications