EWM20906.1, cds9767 (CDS) Nannochloropsis gaditana

Overview
NameEWM20906.1
Unique Namecds9767
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:139938..139940 +
Alignment locationKK037256.1:140263..140367 +
Alignment locationKK037256.1:140650..141309 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20906.1
ProductRibosomal protein L7A/L8
Orig transcript idgnl|cribi|Naga_100156g9.1713.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:139938..139940 +
KK037256.1supercontigKK037256.1:140263..140367 +
KK037256.1supercontigKK037256.1:140650..141309 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0042254ribosome biogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR004037Ribosomal_L7Ae_CS
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
IPR001921Ribosomal_L7A/L8
IPR018492Ribosomal_L7Ae/L8/Nhp2
Homology
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|585100861|gb|EWM20906.1| (Ribosomal protein L7A/L8 [Nannochloropsis gaditana])

HSP 1 Score: 506.523 bits (1303), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:    1 MAPKKVAKKPAKKAAPKANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255
            MAPKKVAKKPAKKAAPKANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF
Sbjct:    1 MAPKKVAKKPAKKAAPKANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255          
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|299116658|emb|CBN74803.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 317.39 bits (812), Expect = 2.231e-106
Identity = 158/239 (66.11%), Postives = 191/239 (79.92%), Query Frame = 0
Query:   18 ANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQ-TVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255
            A+PLF A  +SFRIG  I+PK  DLSRFVKWPRY+R+QRQRKIL QRLKVPP+INQFSKA+DKNQATEL K+L KY+PE K  K++RLK++AAAK +G E PAP+K   VIK+GLKHVT LIE +K   V IAHDV PIELVVW+PALCRK GIPY I+KGKARLG LVH+KNAAV+ L    KED++    + + F  +FN+   R WGGG+MGLKTQ++LE RQ+A+EAELAKKA +
Sbjct:   20 ADPLFPARKKSFRIGRDIQPKV-DLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGKE-PAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVTPIELVVWLPALCRKMGIPYCIMKGKARLGTLVHQKNAAVICLTTVNKEDESKLSNLKSNFTAQFNEGFVRKWGGGVMGLKTQRKLEKRQKAIEAELAKKAQY 256          
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|301117634|ref|XP_002906545.1| (60S ribosomal protein L7a-2 [Phytophthora infestans T30-4] >gi|262107894|gb|EEY65946.1| 60S ribosomal protein L7a-2 [Phytophthora infestans T30-4])

HSP 1 Score: 311.227 bits (796), Expect = 7.169e-104
Identity = 154/244 (63.11%), Postives = 187/244 (76.64%), Query Frame = 0
Query:   14 AAPKANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKK--ERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255
            AA K +PLF A P++FR GG I+PK RDLSRFV+WPRYVR+QRQRK+LYQRLKVPP+INQFS  ++KN AT+LFKLL KY+PE+K  K +RL+ +AA K      PA     V+K+GL HVT LIE KK K V IAHDV+PIELVV++PALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   F+ +FND     R WGGGIMGLKTQK+LE+R++ + AE AKKA +
Sbjct:   26 AASKKDPLFVATPKNFRKGGDIQPK-RDLSRFVRWPRYVRLQRQRKVLYQRLKVPPSINQFSNTVEKNVATDLFKLLLKYQPETKAAKTQRLRNIAAGKEEASAPPA-----VVKFGLNHVTSLIENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLTQVFRTKFNDDSVARRKWGGGIMGLKTQKKLELREKVIAAEAAKKAQY 263          
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|669156040|ref|XP_008613582.1| (50S ribosomal protein L7Ae [Saprolegnia diclina VS20] >gi|530734654|gb|EQC32896.1| 50S ribosomal protein L7Ae [Saprolegnia diclina VS20])

HSP 1 Score: 311.227 bits (796), Expect = 7.274e-104
Identity = 155/240 (64.58%), Postives = 184/240 (76.67%), Query Frame = 0
Query:   18 ANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKE--RTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255
            A+PLF + P++FR+GG I+PK RDLSRFV+WP+ VR+QRQ KIL  RLKVPP+INQF+  LDKN AT+L+KLL KY+PESK  K +RL+ +AA K      PA     VIKYGL HVT LIE KK K V IAHDV PIELVV++PALCRK  IPY IVKGKARLG LVHKKNAAVVAL +  KEDKA F+ +   F+ +FND+    R WGGGIMGLKTQK+LE+R +AV AELAKKA +
Sbjct:   33 ADPLFPSAPKNFRLGGDIQPK-RDLSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFTNTLDKNAATDLYKLLLKYQPESKAAKTQRLRDIAAGKEQVSAPPA-----VIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDESTHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 266          
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|1173947992|gb|OQR96157.1| (60S ribosomal protein L7a-2 [Achlya hypogyna])

HSP 1 Score: 309.686 bits (792), Expect = 3.394e-103
Identity = 157/247 (63.56%), Postives = 187/247 (75.71%), Query Frame = 0
Query:   14 AAPK---ANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKE--RTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255
             APK   A+PLF + P++FR+GG I+PK RDLSRFV+WP+ VR+QRQ KIL  RLKVPP+INQFS  LDKN AT+L+KLL KY+PE+K  K +RL+ +AA K      PA     +IKYGL HVT LIE KK K V IAHDV PIELVV++PALCRK  IPY IVKGKARLG LVHKKNAAVVAL +  KEDKA F+ +   F+ +FND+    R WGGGIMGLKTQK+LE+R +AV AELAKKA +
Sbjct:   25 TAPKKKTADPLFPSAPKNFRLGGDIQPK-RDLSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFSNTLDKNTATDLYKLLLKYQPETKAAKTQRLRDIAAGKEQVSAPPA-----LIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDETSHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 265          
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|1173955032|gb|OQS02109.1| (60S ribosomal protein L7a-2 [Thraustotheca clavata])

HSP 1 Score: 309.301 bits (791), Expect = 4.554e-103
Identity = 155/240 (64.58%), Postives = 184/240 (76.67%), Query Frame = 0
Query:   18 ANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKE--RTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255
            A+PLF + P++FR+GG I+PK RD+SRFV+WP+ VR+QRQ KIL  RLKVPP+INQFS  LDKN AT+LFKLL KY+PE+K  K +RL+ +AA K      PA     VIKYGL HVT LIE KK K V IAHDV PIELVV++PALCRK  IPY IVKGKARLG LVHKKNAAVVAL +  KEDKA F+ +   F+ +FND+    R WGGGIMGLKTQK+LE+R +AV AELAKKA +
Sbjct:   31 ADPLFPSAPKNFRLGGDIQPK-RDVSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFSHTLDKNTATDLFKLLLKYQPETKAAKTQRLRDIAAGKEKVSAPPA-----VIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDETTHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 264          
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|635367800|emb|CCI44069.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 307.76 bits (787), Expect = 1.636e-102
Identity = 153/242 (63.22%), Postives = 185/242 (76.45%), Query Frame = 0
Query:   16 PKANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDK--KERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255
            PK NPLF + PR+FR+G  I+PK RDLSRFV+WP+YV IQRQRKILYQRLKVPP+INQF+  LD++ A +LFKLL KY+PE+K  K +RL+ +AA      + P P    V+KYGL HVT LIE KK K V IAHDVNPIELVV++PALCRK  IPYAIVKGK+RLG +VHKKNAAVVAL    KEDK  F+ + + F+ +FND     R WGGGIMGLKTQK+LEIR++ + AE AKKA +
Sbjct:   29 PKQNPLFPSTPRNFRLGCDIQPK-RDLSRFVRWPKYVTIQRQRKILYQRLKVPPSINQFTNTLDRHVAADLFKLLLKYQPETKAAKTQRLRNIAAG-TDTLKAPPP----VVKYGLNHVTSLIERKKAKMVVIAHDVNPIELVVFLPALCRKFDIPYAIVKGKSRLGQIVHKKNAAVVALTHINKEDKTKFDNLSSTFRTKFNDDTGSRRKWGGGIMGLKTQKKLEIREKVLAAEAAKKAQY 264          
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|695375633|ref|XP_009515589.1| (hypothetical protein PHYSODRAFT_370958, partial [Phytophthora sojae] >gi|348688500|gb|EGZ28314.1| hypothetical protein PHYSODRAFT_370958, partial [Phytophthora sojae])

HSP 1 Score: 304.679 bits (779), Expect = 7.652e-102
Identity = 152/237 (64.14%), Postives = 180/237 (75.95%), Query Frame = 0
Query:   11 AKKAAPKANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDK--KERTWGGGIMGLKTQKRLEIRQRAV 245
            A   A K NPLF + P++FR GG I+PK RDLSRFV+WPRYVR+QRQRKILYQRLKVPP+INQFS  L+KN AT+LFKLL KY+PE+K  K  RL+ +AA K      PA     V+K+GL HVT LIE KK K V IAHDV+PIELVV++PALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   FK +FND     R WGGGIMGLKTQK+LE+R++A+
Sbjct:    2 AASTASKKNPLFVSTPKNFRKGGDIQPK-RDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTLEKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAPPA-----VVKFGLNHVTSLIENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSEAFKAKFNDDAVSRRKWGGGIMGLKTQKKLELREKAI 232          
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|1214711140|gb|OWZ22172.1| (60S ribosomal protein L7a-2 [Phytophthora megakarya])

HSP 1 Score: 296.204 bits (757), Expect = 6.213e-98
Identity = 146/230 (63.48%), Postives = 175/230 (76.09%), Query Frame = 0
Query:   14 AAPKANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKK--ERTWGGGIMGLKTQKRLEIR 241
            +A K +PLF + P++FR GG I+PK RDLSRFV+WPRYVR+QRQRK+LYQRLKVPP+INQFS  +DKN AT+LFKLL KY+PE+K  K  RL+ +AA K      PA     V+K+GL HVT LIE KK K V IAHDV+PIELVV++PALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   F  +FN+     R WGGGIMGLKTQK+LE+R
Sbjct:   25 SASKKDPLFVSAPKNFRKGGDIQPK-RDLSRFVRWPRYVRLQRQRKVLYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAPPA-----VVKFGLNHVTSLIENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLTETFHAKFNEDNVARRKWGGGIMGLKTQKKLELR 248          
BLAST of EWM20906.1 vs. NCBI_GenBank
Match: gi|953486111|emb|CEG50289.1| (ribosomal protein rpl7a [Plasmopara halstedii])

HSP 1 Score: 296.204 bits (757), Expect = 6.293e-98
Identity = 147/225 (65.33%), Postives = 173/225 (76.89%), Query Frame = 0
Query:   19 NPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKK--ERTWGGGIMGLKTQKRLEIR 241
            NPLFA+ P++FR G  I+PK RDLSRFV+WPRYVR+QRQRKILYQRLKVPP+INQFS  +DKN AT+LFKLL KY+PE+K  K  RL+ +AA K      PA     V+K+GL HVT LIE KK K V IAHDVNPIELVV++PALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   F+ +FN+     R WGGGIMGLKTQK+LE+R
Sbjct:   32 NPLFASTPKNFRKGNDIQPK-RDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKQEATAPPA-----VVKFGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSQVFRAKFNEDSATRRKWGGGIMGLKTQKKLELR 250          
The following BLAST results are available for this feature:
BLAST of EWM20906.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100861|gb|EWM20906.1|0.000e+0100.00Ribosomal protein L7A/L8 [Nannochloropsis gaditana... [more]
gi|299116658|emb|CBN74803.1|2.231e-10666.11conserved unknown protein [Ectocarpus siliculosus][more]
gi|301117634|ref|XP_002906545.1|7.169e-10463.1160S ribosomal protein L7a-2 [Phytophthora infestan... [more]
gi|669156040|ref|XP_008613582.1|7.274e-10464.5850S ribosomal protein L7Ae [Saprolegnia diclina VS... [more]
gi|1173947992|gb|OQR96157.1|3.394e-10363.5660S ribosomal protein L7a-2 [Achlya hypogyna][more]
gi|1173955032|gb|OQS02109.1|4.554e-10364.5860S ribosomal protein L7a-2 [Thraustotheca clavata... [more]
gi|635367800|emb|CCI44069.1|1.636e-10263.22unnamed protein product [Albugo candida][more]
gi|695375633|ref|XP_009515589.1|7.652e-10264.14hypothetical protein PHYSODRAFT_370958, partial [P... [more]
gi|1214711140|gb|OWZ22172.1|6.213e-9863.4860S ribosomal protein L7a-2 [Phytophthora megakary... [more]
gi|953486111|emb|CEG50289.1|6.293e-9865.33ribosomal protein rpl7a [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9798rna9798Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications