rna9793, rna9793 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9793
Unique Name	rna9793
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	414
Alignment location	KK037256.1:124697..127015 +

Link to JBrowse

Properties


Property Name	Value
Product	chromosome transmission fidelity
Orig transcript id	gnl\|cribi\|Naga_100156g15.1706.mrna
Orig protein id	gnl\|cribi\|Naga_100156g15.1706
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:124697..127015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100156g15	gene9508	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9793	rna9793-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20899.1	cds9762	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:124697..127015+
coding sequence from alignment at KK037256.1:124697..127015+

mRNA sequence

>rna9793 ID=rna9793|Name=rna9793|organism=Nannochloropsis gaditana|type=mRNA|length=414bp
ATGTTGGTGTGGAGGGCAATCAGTCATCGTGAAGTGGTGGATGCAATAAA
TGCCTTTGACAACAGAGGTCGACAGGTACGGGTTTGGGAGCGATACATGC
TAATATTGGGCTGTCGTGGGACTTTGGGCCTCCAGAATAATATAGTAATA
CAAGAAACCTTTAGGACATGTAACACCCGCCAAGCGCTGAAATCGCGGAT
ACTTAATTCTTCAGAATGTTACGCCTTACATGGCGAGAATGGAGAACAGA
CACGACTTCATCCAGAGCGAAATTGTTGTATTTTTATCTATTTCAAAGCC
AAGCCTTCAATGGTATTTATTGTTATGCGATTTGAAACGAGATATGCTGT
GATCACTTCTGCATGTTGCGAATTGGTAGCAAGTTGCCATTTCTTCCTGG
ACCAAGAGGGATGA

protein sequence of rna9793

>rna9793-protein ID=rna9793-protein|Name=rna9793|organism=Nannochloropsis gaditana|type=polypeptide|length=718bp
MWGGQGGGSSQAGHDGTGQELPGRRTGKSDPDFGDTDLSFQRRDRRPEPS
ARAILLAGPPGIGKTTLAHVIAEHCGYRPLEINASDDRSAGALREKMTRA
MQNQAVLGDKRPNCIILDEADGIEGKAAMKMIVNIIKAPLKSKQKGSAGS
KDEAGGHSGADGSVSCPPLTRPLICICNDLYVPALRALREVATVFRFRRR
TNPRLLQRLKTICQAENLPVEGVALSVLCEASGHDVRSCLNTLQFFQARL
PAAVLSQGQGQEEQDKPPAAFASHLSRQLLEYVGEGLKDQEKDMLQVCQS
LFRKPASKATATPALLPGEEGAGTEERAQSRVRDTDRVMTSVASYSDHAH
VLLAAQENYCQLRFTDPSLTKVLHAAEWLAFSDLVHGRQMEGLHVMEDLH
LATAAALHLLCRVETRPRLALPRKDHEYRSARLSRQHILQSFGEGCSLQA
LWARRPTPVVLDVVSPLMHILNPSLRPVNPDLYSFAEKAGLRHLVDVLLA
CGISYVQSPGSGLSHPHQHSGAPERLEMLPALVHLAEFGLANDGTGAPKS
ETLPVQRPRPPRLLPAFVKLLATQEAKLEALRRTELRKTDALKAKKGMSS
STGQGPRSNGLPSKAAASCEATPGPNIAPLVAKEEEEPGPKAWYVKLGTK
RSTTKTKSRTQTDGSPVGDTGTRGLDLGEGLFPPEHKQSAAKKSTVRFKY
VAGYTNAVRRPVYMKDMI

mRNA from alignment at KK037256.1:124697..127015+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9793 ID=rna9793|Name=rna9793|organism=Nannochloropsis gaditana|type=mRNA|length=2319bp|location=Sequence derived from alignment at KK037256.1:124697..127015+ (Nannochloropsis gaditana)
ATgtggggggggcagggcgggggcagcAGCCAGGCAGGACACGATGGGAC
CGGCCAGGAGTTACCAGGGCGCCGGACGGGgaaaagcgacccggatTTTG
GGGACACGGACCTTTCTTTCCAGCGCAGGGACCGACGGCCCGAGCCTTCC
GCACGCGCCATCCTGCTGGCGGGGCCGCCGGGAATCGGAAAGACCACACT
TGCCCACGTGATAGCCGAGCACTGCGGGTACAGGCCCTTGGAGATCAACG
CCTCGGACGACAGGTCAGCAGGCGCCCTCCGGGAGAAGATGACGCGTGCC
ATGCAGAACCAGGCGGTGCTGGGTGATAAGCGGCCCAATTGCATcatcct
ggacgaggcggatgGGATCGAGGGGAAAGCTGCCATGAAAATGATCGTGA
ACATCATCAAAGCCCCTTTGAAGAGCAAGCAGAAAGGCAGCGCCGGCAGC
AAGGACGAGGCTGGGGGCCATTCCGGGGCCGACGGGAGCGTttcgtgccc
ccccttgacGCGGCCACTGATTTGCATCTGCAACGACCTGTacgttcccg
ccctccgggCCCTTCGCGAGGTGGCTACCGTCTTTCGGTTCCGGCGGCGC
ACCAATCCCCGCCTCTTGCAGCGCCTGAAAACCATCTGCCAAGCCGAGAA
CCTGCCCGTAGAGGGCGTGGCTTTGAGCGTCCTGTGCGAAGCCTCCGGCC
ACGACGTGCGCTCCTGCCTGAACACGCTCCAATTCTTCCAGGCCCGTCTA
CCCGCCGCGGTCCTGTCCCAGGGCCAAGGGCAGGAAGAACAGGATAAGCC
ACCGgccgccttcgcctcccatCTCTCGCGCCAGCTCCTGGAGTacgtgg
gagagggcctcAAGGACCAAGAGAAGGACATGCTTCAAGTCTGCCAGTCC
CTCTTCCGCAAGCCGGCCTCCAAGGCGacggccacgcccgccctcttgcc
cggggaggagggagcagggacggaggagcgGGCACAGAGCCGGGTCCGCG
ACACCGACCGGGTCATGACCAGCGTCGCTTCCTACAGCGACcacgcccac
gtcctcctggccGCCCAGGAGAACTACTGCCAGCTCCGCTTCACGGACCC
GAGCCTGACGAAAGTTCTGCATGCGGCGGAATGGCTGGCTTTCTCCGACC
TGGTGCACGGGCGGCAGATGGAGGGGCTCCACGTGATGGAGGACCTGCAC
CtggccaccgccgccgccctccacctgctTTGCCGCGTGGAGACTCGTCC
GCGCCTGGCCCTGCCCCGCAAAGACCACGAATACCGGAGCGCCCGCCTGA
GCCGACAGCACATTCTCCAGTCTTTCGGCGAGGGCTGCTCCCTCCAAGCG
CTGTGGGCACGGCGTCCCACCCCCGTCGTCCTGGATGTGGTGTCGCCGCT
CATGCACATCTTGAACCCGAGCCTGCGGCCCGTGAATCCCGACCTGTATT
CTTTCGCAGAAAAGGCGGGTCTTCGGCACCTGGTGGACGTGTTGCTGGCC
TGTGGGATCTCCTACGTCCAGAGCCCTGGCAGTGGCCTCTCCCATCCGCA
CCAGCATTCAGGGGCGCCTGAGCGTTTGGAAATGCTCCCGGCACTGGTCC
ACCTGGCCGAATTCGGTCTGGCGAACGACGGAACGGGCGCGCCAAAATCC
GAGACCTTGCCAGTGCAACGCCCGCGTCCGCcgcgcctcctgcccgcctt
TGTCAAGCTCCTGGCCACGCAGGAGGCGAAGCTTGAGGCCTTGCGAAGGA
CAGAGCTCCGCAAGACCGATGCGTTGAAAGCTAAAAAGGGCATGTCTTCG
TCGACAGGGCAAGGACCTCGCTCGAACGGTCTGCCCTCCAAGGCGGCTGC
GTCTTGCGAGGCCACCCCCGGCCCGAATATTGCGCCCCTGGtggcgaaag
aggaggaggagcctgGGCCAAAAGCATGGTACGTGAAGCTTGGAACCAAG
CGCAGCACGACCAAGACAAAATCTAGGACGCAAACCGACGGGAGCCCTGT
AGGGGATACGGGCACCCGGGGGCTTGACCTCGGGGAgggcctttttcctc
ccgagCACAAACAGTCCGCAGCGAAGAAGTCCACTGTACGCTTCAAGTAT
GTCGCAGGATACACGAACGCGGTGCGCCGCCCTGTCTATATGAAAGACAT
GATCTAGGTGAAGGGCGGGCATAAGCTTGAAACGTGAGGAGCTAGtagtg
ggaaggaagaagttCAGGGCAAGAGAGACGTGGGAACGTAAAGTAGGATA
ATCGAGGACCACCCGAGTCATCAAAAGCACTAACTGGAGACGCAGTCAAC
ATCGCATTTTCATGCTTTA

Coding sequence (CDS) from alignment at KK037256.1:124697..127015+

>rna9793 ID=rna9793|Name=rna9793|organism=Nannochloropsis gaditana|type=CDS|length=2157bp|location=Sequence derived from alignment at KK037256.1:124697..127015+ (Nannochloropsis gaditana)
ATgtggggggggcagggcgggggcagcAGCCAGGCAGGACACGATGGGAC
CGGCCAGGAGTTACCAGGGCGCCGGACGGGgaaaagcgacccggatTTTG
GGGACACGGACCTTTCTTTCCAGCGCAGGGACCGACGGCCCGAGCCTTCC
GCACGCGCCATCCTGCTGGCGGGGCCGCCGGGAATCGGAAAGACCACACT
TGCCCACGTGATAGCCGAGCACTGCGGGTACAGGCCCTTGGAGATCAACG
CCTCGGACGACAGGTCAGCAGGCGCCCTCCGGGAGAAGATGACGCGTGCC
ATGCAGAACCAGGCGGTGCTGGGTGATAAGCGGCCCAATTGCATcatcct
ggacgaggcggatgGGATCGAGGGGAAAGCTGCCATGAAAATGATCGTGA
ACATCATCAAAGCCCCTTTGAAGAGCAAGCAGAAAGGCAGCGCCGGCAGC
AAGGACGAGGCTGGGGGCCATTCCGGGGCCGACGGGAGCGTttcgtgccc
ccccttgacGCGGCCACTGATTTGCATCTGCAACGACCTGTacgttcccg
ccctccgggCCCTTCGCGAGGTGGCTACCGTCTTTCGGTTCCGGCGGCGC
ACCAATCCCCGCCTCTTGCAGCGCCTGAAAACCATCTGCCAAGCCGAGAA
CCTGCCCGTAGAGGGCGTGGCTTTGAGCGTCCTGTGCGAAGCCTCCGGCC
ACGACGTGCGCTCCTGCCTGAACACGCTCCAATTCTTCCAGGCCCGTCTA
CCCGCCGCGGTCCTGTCCCAGGGCCAAGGGCAGGAAGAACAGGATAAGCC
ACCGgccgccttcgcctcccatCTCTCGCGCCAGCTCCTGGAGTacgtgg
gagagggcctcAAGGACCAAGAGAAGGACATGCTTCAAGTCTGCCAGTCC
CTCTTCCGCAAGCCGGCCTCCAAGGCGacggccacgcccgccctcttgcc
cggggaggagggagcagggacggaggagcgGGCACAGAGCCGGGTCCGCG
ACACCGACCGGGTCATGACCAGCGTCGCTTCCTACAGCGACcacgcccac
gtcctcctggccGCCCAGGAGAACTACTGCCAGCTCCGCTTCACGGACCC
GAGCCTGACGAAAGTTCTGCATGCGGCGGAATGGCTGGCTTTCTCCGACC
TGGTGCACGGGCGGCAGATGGAGGGGCTCCACGTGATGGAGGACCTGCAC
CtggccaccgccgccgccctccacctgctTTGCCGCGTGGAGACTCGTCC
GCGCCTGGCCCTGCCCCGCAAAGACCACGAATACCGGAGCGCCCGCCTGA
GCCGACAGCACATTCTCCAGTCTTTCGGCGAGGGCTGCTCCCTCCAAGCG
CTGTGGGCACGGCGTCCCACCCCCGTCGTCCTGGATGTGGTGTCGCCGCT
CATGCACATCTTGAACCCGAGCCTGCGGCCCGTGAATCCCGACCTGTATT
CTTTCGCAGAAAAGGCGGGTCTTCGGCACCTGGTGGACGTGTTGCTGGCC
TGTGGGATCTCCTACGTCCAGAGCCCTGGCAGTGGCCTCTCCCATCCGCA
CCAGCATTCAGGGGCGCCTGAGCGTTTGGAAATGCTCCCGGCACTGGTCC
ACCTGGCCGAATTCGGTCTGGCGAACGACGGAACGGGCGCGCCAAAATCC
GAGACCTTGCCAGTGCAACGCCCGCGTCCGCcgcgcctcctgcccgcctt
TGTCAAGCTCCTGGCCACGCAGGAGGCGAAGCTTGAGGCCTTGCGAAGGA
CAGAGCTCCGCAAGACCGATGCGTTGAAAGCTAAAAAGGGCATGTCTTCG
TCGACAGGGCAAGGACCTCGCTCGAACGGTCTGCCCTCCAAGGCGGCTGC
GTCTTGCGAGGCCACCCCCGGCCCGAATATTGCGCCCCTGGtggcgaaag
aggaggaggagcctgGGCCAAAAGCATGGTACGTGAAGCTTGGAACCAAG
CGCAGCACGACCAAGACAAAATCTAGGACGCAAACCGACGGGAGCCCTGT
AGGGGATACGGGCACCCGGGGGCTTGACCTCGGGGAgggcctttttcctc
ccgagCACAAACAGTCCGCAGCGAAGAAGTCCACTGTACGCTTCAAGTAT
GTCGCAGGATACACGAACGCGGTGCGCCGCCCTGTCTATATGAAAGACAT
GATCTAG

Synonyms

Publications