rna9792, rna9792 (mRNA) Nannochloropsis gaditana

Overview
Namerna9792
Unique Namerna9792
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length246
Alignment locationKK037256.1:118984..119739 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100061g1.8547.mrna
Orig protein idgnl|cribi|Naga_100061g1.8547
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:118984..119739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100061g1gene9507Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9792rna9792-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20914.1cds9761Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9792 ID=rna9792|Name=rna9792|organism=Nannochloropsis gaditana|type=mRNA|length=246bp
ATGGTCAATGGGGATTATCGGACGTGCCGAGTGCGGCCGCATCCTCTTCC
CACTCTTTCTGAAGAGACCTTGCTTATTCTTACCCTACCTTTTTACCGAA
TCTTTTACAATCGCGTGATACTATTTACTTCCCTGTGCGGCTCACCTCTC
TACGACCTATTAAAAAAATCGAAAATTGACGATTGCAAAATGCTGTACCA
GAGGGTACGATCAAAATCGCCCGGCGTAGCGAACGGAAGATCGTAA
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protein sequence of rna9792

>rna9792-protein ID=rna9792-protein|Name=rna9792|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MLVWRAISHREVVDAINAFDNRGRQVRVWERYMLILGCRGTLGLQNNIVI
QETFRTCNTRQALKSRILNSSECYALHGENGEQTRLHPERNCCIFIYFKA
KPSMVFIVMRFETRYAVITSACCELVASCHFFLDQEG
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mRNA from alignment at KK037256.1:118984..119739+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9792 ID=rna9792|Name=rna9792|organism=Nannochloropsis gaditana|type=mRNA|length=756bp|location=Sequence derived from alignment at KK037256.1:118984..119739+ (Nannochloropsis gaditana)
ATGTTGGTGTGGAGGGCAATCAGTCATCGTGAAGTGGTGGATGCAATAAA
TGCCTTTGACAACAGAGGTCGACAGGTACGGGTTTGGGAGCGATACATGC
TAATATGTTGATCCGCTGGAAGCTGAGGTCCATAGTGTGTAGCATTAATA
TGTAGAAAGTACTGGCTACATTTCTTTGACCTTATAAATTGTTTAAGTGG
GCTGTCGTGGGACTTTGGGCCTCCAGAATAATATAGTAATACAAGAAAGT
ATCATATGACCTAAGCTGAGCATTTTACCTCTTGGGAGCCCACATACGCT
CGTTAGCACCCCGAAAAGACAAATTTGACAGAATTTTAATTTAGCATCCC
ATTTCTCCACACTTCAATGACCGATACTAAGCCTTTAGGACATGTAACAC
CCGCCAAGCGCTGAAATCGCGGATACTTAATTCTTCAGAATGTTACGCCT
TACATGGCGAGAATGGAGAACAGACACGACTTCATCCAGAGCGAAATTGT
TGTATTTTTATCTatgttctcctcctcaggcAGTACAGTACGCATGAAGG
TTGAGAGGGAAACCTTCTTTGTTCCTCTTTGTCAAGCTCATGGGAAGCCA
GGAGGTTGATTGGTGAAAGGCGCAATATCTTAGTTCAAAGCCAAGCCTTC
AATGGTATTTATTGTTATGCGATTTGAAACGAGATATGCTGTGATCACTT
CTGCATGTTGCGAATTGGTAGCAAGTTGCCATTTCTTCCTGGACCAAGAG
GGATGA
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Coding sequence (CDS) from alignment at KK037256.1:118984..119739+

>rna9792 ID=rna9792|Name=rna9792|organism=Nannochloropsis gaditana|type=CDS|length=1656bp|location=Sequence derived from alignment at KK037256.1:118984..119739+ (Nannochloropsis gaditana)
ATGTTGGTGTGGAGGGCAATCAGTCATCGTGAAGTGGTGGATGCAATAAA
TGCCTTTGACAACAGAGGTCGACAGGTACGGGTTTGGGAGCGATACATGC
TAATATTGGGCTGTCGTGGGACTTTGGGCCTCCAGAATAATATAGTAATA
CAAGAAACCTTTAGGACATGTAACACCCGCCAAGCGCTGAAATCGCGGAT
ACTTAATTCTTCAGAATGTTACGCCTTACATGGCGAGAATGGAGAACAGA
CACGACTTCATCCAGAGCGAAATTGTTGTATTTTTATCTatTTCAAAGCC
AAGCCTTCAATGGTATTTATTGTTATGCGATTTGAAACGAGATATGCTGT
GATCACTTCTGCATGTTGCGAATTGGTAGCAAGTTGCCATTTCTTCCTGG
ACCAAGAGGGATGAATGTTGGTGTGGAGGGCAATCAGTCATCGTGAAGTG
GTGGATGCAATAAATGCCTTTGACAACAGAGGTCGACAGGTACGGGTTTG
GGAGCGATACATGCTAATATTGGGCTGTCGTGGGACTTTGGGCCTCCAGA
ATAATATAGTAATACAAGAAACCTTTAGGACATGTAACACCCGCCAAGCG
CTGAAATCGCGGATACTTAATTCTTCAGAATGTTACGCCTTACATGGCGA
GAATGGAGAACAGACACGACTTCATCCAGAGCGAAATTGTTGTATTTTTA
TCTatTTCAAAGCCAAGCCTTCAATGGTATTTATTGTTATGCGATTTGAA
ACGAGATATGCTGTGATCACTTCTGCATGTTGCGAATTGGTAGCAAGTTG
CCATTTCTTCCTGGACCAAGAGGGATGAATGTTGGTGTGGAGGGCAATCA
GTCATCGTGAAGTGGTGGATGCAATAAATGCCTTTGACAACAGAGGTCGA
CAGGTACGGGTTTGGGAGCGATACATGCTAATATTGGGCTGTCGTGGGAC
TTTGGGCCTCCAGAATAATATAGTAATACAAGAAACCTTTAGGACATGTA
ACACCCGCCAAGCGCTGAAATCGCGGATACTTAATTCTTCAGAATGTTAC
GCCTTACATGGCGAGAATGGAGAACAGACACGACTTCATCCAGAGCGAAA
TTGTTGTATTTTTATCTatTTCAAAGCCAAGCCTTCAATGGTATTTATTG
TTATGCGATTTGAAACGAGATATGCTGTGATCACTTCTGCATGTTGCGAA
TTGGTAGCAAGTTGCCATTTCTTCCTGGACCAAGAGGGATGAATGTTGGT
GTGGAGGGCAATCAGTCATCGTGAAGTGGTGGATGCAATAAATGCCTTTG
ACAACAGAGGTCGACAGGTACGGGTTTGGGAGCGATACATGCTAATATTG
GGCTGTCGTGGGACTTTGGGCCTCCAGAATAATATAGTAATACAAGAAAC
CTTTAGGACATGTAACACCCGCCAAGCGCTGAAATCGCGGATACTTAATT
CTTCAGAATGTTACGCCTTACATGGCGAGAATGGAGAACAGACACGACTT
CATCCAGAGCGAAATTGTTGTATTTTTATCTatTTCAAAGCCAAGCCTTC
AATGGTATTTATTGTTATGCGATTTGAAACGAGATATGCTGTGATCACTT
CTGCATGTTGCGAATTGGTAGCAAGTTGCCATTTCTTCCTGGACCAAGAG
GGATGA
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Synonyms
Publications