rna9790, rna9790 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9790
Unique Name	rna9790
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1615
Alignment location	KK037256.1:115468..118294 -

Link to JBrowse

Properties


Property Name	Value
Product	SANT/Myb domain protein
Orig transcript id	gnl\|cribi\|Naga_100061g3.8573.mrna
Orig protein id	gnl\|cribi\|Naga_100061g3.8573
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:115468..118294 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100061g3	gene9505	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20940.1	cds9759	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9790	rna9790-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:115468..118294-
coding sequence from alignment at KK037256.1:115468..118294-

mRNA sequence

>rna9790 ID=rna9790|Name=rna9790|organism=Nannochloropsis gaditana|type=mRNA|length=1615bp
CCTTGCCAGCTTAAAAGCCTCGGAGACCCGAGTATGGTCCCGGCTTACCC
CAATGGGAACACAAGTAGTCATCAACGCCGCCTTCGCTTACCATTTCCAC
ATTCTTATGCTTTCTTTGAAACCTGACAGAAAGCGCAGTCATGCATACGT
CCTTTTCTCAGTCCACGGCGACCGCCGAGGGTTGCAGGCGCGTGCAAGCA
GCCAGCATGGGGGGCGGGTCCGGCGGAGACAGTAAGACAGCCGCCGCACG
CATTCTCGGCTCAGGCTCTGCCGGTGTTTTTGAATTGGCCTTATTCCACC
CATTCGACACCGCGGCGAAGCGTTTGATGAGCTGGGAGGGTCGGATCATA
GTGGCCGGGCACACCATGACCAACCTGAACAACGCGGTCTTCCGCAATCA
AGCGGCCGCGGCCCCCATAAGCAAGTGGCTCTCTCTCTTCCCCGGCGTCA
CCTTTGGCGCCGCTTACAAGGTCCTCCAGCGCGCCTATAAATTCGGAGGT
CAGCCCTTCGTGCGGGATTTCCTGACGCAGCACTATCAGGAAAACTTCGA
GAACGCGGTGGGGAAGAAGAACGGGAAGACTATGATCTACGCCACTGCCG
GCTCCATCATGGGGGTGGGGGAGATCGTTCTGCTGCCTTTGGACGTGCTC
AAGATCAAGGCGCAGACGAATCCGGAGGCTTTCAAGGGGCGTGGCCTTTT
CAAGATCTTCGCGGAGGAGGGCTGGGGCCTGTACCGAGGGGCGACCTGGA
CAGCGGCTCGGAACGCTCCGGGTAGCTTTGCGCTTTTTGGAGGCTCGGCC
GCGATGAAAGACTACGTCTTCAAGCTCGAAAAGTACAGCGACGCCACGTT
CTTTCAGGACTCTATGGCTTCGATAGCGGGGGCTGTTGCGTCCATTAGCG
TGGCGCAGCCGCTGGACGTGATCAAGACGCGCATTCAGAAGCGCGATTTC
AAGGACAAGACATCGGGGATGAGCATCCTGAGCGACCTGGTGAAAAATGA
GGGTTTTGGCGCCTTCTTTAAGGGACTGACGCCCAAACTGATCGTGATCG
GGCCCAAGCTGGTCTTCTCTTTCACCATCGCGCAGCAGCTCATGTCCTTC
TTCGAACGGCGCTTCTAAAGCCAGGGCGGGAAGGAGGACGCTAGCTACGG
AAAGGGGCGAGCGGTCCATTTTGAGCGAGGACTGCCGCTGAGGAGGGAAA
AGGCATGAGGCAAGCGTCGCAGGAGGAGCATCCCATGAAATCCAGGACAC
ACGGGGAATTCCAGGAGCGAGGAGAGGGCGTGTTTCAAGCCTTGCGTGTC
CGGTGGGCGAAGAAAGAGGGGGACTGGATTGTTTTTGTAGGCGCCGGAGC
GGAAAGGGCAAGGGAGGGATGTATGTGGGGGGGACTGTCCGGATCCACCC
CGCAGACATACCACACCAACAATTTTTGCATGTGTTAATCTTATGGCATA
AACGACAAAGAACACGCTATAGCGAGAGGATAGGCAGGCCACTGGCTGAG
CTGGATGTTTTTTTTTGTGGCCGAGGTGGACGGAGCACTTCAGAGAAGCA
AGTGAAAGGAGAAAAGACCGCCCTGAATGCCTCCTCCAGGCCTCAGAAGA
CATCTGCTTTAACGG

protein sequence of rna9790

>rna9790-protein ID=rna9790-protein|Name=rna9790|organism=Nannochloropsis gaditana|type=polypeptide|length=619bp
MSAPKLSNTTHGLHSQNARAPRPVSSFRADRGAPGPGLPPPPPPSPSGSS
QKLLPTRQSVDKGGNGVTEGGEGKDSLCGDTHEAHAAPAAGPTSRSNQHS
FQYTPAASTSDATSCELSPSVPGHYSQPSTLAVSAGSAGSHQRPPSQSPQ
GANETAHPPNYPLSTHLPEHESNTSRPLSSDAASEYGDGPGGARTESGMW
PMPPSGTVGVKRRRESVRGRWTAEEHEAFLRGLRVYGREWKRVAADIKTR
SSAQIRSHAQKYFAKLAKARGMAGMTHAGGMALDSEGSGMLLGSEEPSGD
GAGSVRRLHGVPSLPTGAHHRHPRGQEVPSPGTYTAFSRGGGPHDVSLAY
AHYGLAQHGQMRSGLGLPDPYPAYAPYPLQAPTPAPPQQVLPRAEEAALR
REVGKVLVKLKARREAMLVAGGDREQRPRFERSGGDKWGEADEGETTPGA
RGALAGPRPGVASGREGAGREEPGQQERVWRYDDGQRGGFGATGQEGPYG
GRGQDPRPPGASHSAFGRGEGLKTTEPASFAHGGAPPLSLGQLSSNDPRQ
PPQGASARPRSASSSCTLLPASIPSSFSSAPPLCTGESVATEREEEKEGQ
TDEDMGPEEATGVGPRRVE

mRNA from alignment at KK037256.1:115468..118294-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9790 ID=rna9790|Name=rna9790|organism=Nannochloropsis gaditana|type=mRNA|length=2827bp|location=Sequence derived from alignment at KK037256.1:115468..118294- (Nannochloropsis gaditana)
ATGGGCACTTACCCCGTGCCTGCAACCATCACAACAACGGTGCTCTCATA
CGTGGGCTCTCCGGTTGCAGGGCACCTTTCTGTGGTCTCTGGTGTTCGTG
ACGCCTGTGGCGCGGGCGTCGGGCATTCGCAAGGAGCAGGAAACGTTCTT
CTCCGCAACTTGCCTTGCACTCGTCGAGGAGAACATATCCATAAAGATTT
GCAGGCGGGAGCGTAATTTCGGGAAACACCAACCCATTCGTTGAACACAA
TCGCAACAGGATGTCAGCGCCTAAACTGAGCAACACCACGCATGGATTGC
ACTCACAAAATGCACGCGCGCCTAGGCCCGTGTCATCGTTTCGGGCTGAC
CGAGGGGCCCCGGGCCCGGGCCTCCCTCCCCCTCCGCCCCCCTCTCCGAG
TGGCTCGAGCCAGAAACTCTTACCCACACGTCAGTCCGTTGACAAGGGAG
GAAATGGCGTCACTGAGGGTGGTGAGGGAAAGGACTCCCTGTGTGGTGAC
ACACACGAGGCGCACGCCGCCCCCGCAGCTGGCCCGACTTCTCGCTCAAA
CCAGCATTCATTTCAATATACACCCGCAGCATCTACTTCGGATGCCACGT
CTTGTGAACTTTCTCCCTCGGTGCCTGGGCACTATTCGCAGCCGTCCACC
TTGGCGGTGTCCGCTGGCTCTGCCGGGTCGCACCAGAGGCCTCCCTCTCA
GTCCCCGCAGGGTGCGAACGAGACCGCGCATCCTCCGAACTACCCTTTAT
CAACGCACCTCCCAGAGCATGAAAGCAATACCTCCAGGCCCTTGTCGTCG
GACGCGGCGAGCGAGTACGGCGATGGTCCAGGTGGGGCACGCACCGAGTC
GGGGATGTGGCCCATGCCCCCTTCAGGGACGGTGGGTGTGAAGAGAAGGA
GGGAGAGCGTGCGGGGTAGATGGACGGCCGAGGAGCACGAGGCATTCCTG
CGAGGACTTCGGGTGTACGGGCGGGAGTGGAAGCGGGTGGCGGCAGACAT
CAAGACACGGAGCAGCGCTCAGATCCGGTCGCACGCCCAGAAGTACTTCG
CCAAACTTGCCAAGGCGCGCGGGATGGCGGGGATGACGCACGCGGGGGGC
ATGGCTCTGGATTCAGAGGGGTCGGGCATGCTTCTCGGGTCGGAGGAGCC
TTCAGGGGACGGCGCGGGATCGGTTAGACGGCTCCATGGCGTCCCCTCCT
TACCCACCGGGGCCCACCATCGGCACCCCCGCGGGCAGGAAGTGCCATCC
CCGGGCACCTACACCGCCTTCTCAAGGGGCGGGGGGCCGCACGACGTCAG
CCTGGCCTACGCGCACTATGGTCTCGCCCAGCACGGACAGATGAGGTCAG
GGCTAGGGCTACCGGATCCGTACCCAGCGTATGCACCCTACCCTCTCCAG
GCGCCGACGCCGGCTCCGCCCCAACAGGTGCTTCCCCGGGCCGAGGAGGC
CGCCCTTCGAAGGGAGGTCGGGAAAGTGCTGGTCAAGCTTAAGGCGAGGC
GCGAGGCGATGCTGGTGGCGGGCGGGGACAGGGAGCAGAGGCCGAGATTT
GAGCGCTCGGGGGGCGACAAGTGGGGGGAGGCGGACGAGGGGGAGACGAC
GCCAGGGGCGCGCGGGGCACTAGCGGGCCCGAGGCCGGGCGTGGCATCAG
GCCGCGAGGGTGCGGGGCGGGAGGAGCCAGGACAGCAGGAGCGGGTTTGG
CGGTATGACGACGGGCAGCGAGGAGGGTTCGGGGCGACGGGACAGGAGGG
CCCATACGGAGGGCGCGGGCAGGATCCGAGGCCGCCAGGCGCGTCTCATA
GTGCTTTCGGAAGGGGGGAAGGCCTGAAGACTACCGAGCCGGCGTCTTTC
GCTCATGGGGGCGCGCCTCCTCTCTCTCTTGGACAGCTGTCTTCGAATGA
CCCCAGACAGCCTCCGCAGGGAGCCTCCGCCCGCCCGCGTTCGGCCTCCT
CCTCCTGCACCCTCCTCCCTGCCTCCATCCCTTCTTCCTTTTCGTCCGCT
CCTCCCCTCTGTACCGGTGAGTCCGTGGCGACGGAGCGCGAGGAGGAAAA
AGAAGGACAGACAGACGAGGACATGGGCCCGGAGGAGGCAACCGGGGTGG
GGCCGCGGCGGGTCGAGTGAGCCGGACCCCGGTGGGTGCACAGCGGAGGG
CATCAGAAATGTGAGAGGTTGTGGAATGGCACGTTAGGAAGATGGAAGGC
AAGGTAGCGTCAGCCTGTGACGCGGTACCGGAGGATCGAGAACGGAAGAC
GAGCAACGGCTGAGGCCGGGAGTGGCGCACGGGGGCCCTTCCAAGGCGAC
AGCGCTTATGCGCCAGAGCCGTAAGGCCACGGCGTTGCGCACGGATTCAT
CGAGTCGTGTAACGGTATTTGGGTTCACTTCCTTAGCTTAGCAGGGTGCG
AAATGGAAGGGGGGAGGAAGGGGGAGGGATACATTTGGATTGTAGATTTT
CGAACTTTGACTGCGCAAGTTTCTGTAGATTCTTCTTTCCCTCCCAATGT
TTTTATTCGTCTCTGTACAGCGGATGAGGTTGTACGATTCACGCAATAGT
ATCCTGAGAATGCTGAGAGTGAAGAGGGAAGGGGAACGAGTGATCGGCCG
CTCAGTGCTTGGTTTAAAATTTTGAAATCCGAATTCGCCTGTTGTAGTCT
CGTACAAAATTATTGCAGCAGGGGTCAATAAAGAATGAACATTACTTTCC
GTTAAAGCAGATGTCTTCTGAGGCCTGGAGGAGGCATTCAGGGCGGTCTT
TTCTCCTTTCACTTGCTTCTCTGAAGTGCTCCGTCCACCTCGGCCACAAA
AAAAAACATCCAGCTCAGCCAGTGGCC

Coding sequence (CDS) from alignment at KK037256.1:115468..118294-

>rna9790 ID=rna9790|Name=rna9790|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at KK037256.1:115468..118294- (Nannochloropsis gaditana)
ATGTCAGCGCCTAAACTGAGCAACACCACGCATGGATTGCACTCACAAAA
TGCACGCGCGCCTAGGCCCGTGTCATCGTTTCGGGCTGACCGAGGGGCCC
CGGGCCCGGGCCTCCCTCCCCCTCCGCCCCCCTCTCCGAGTGGCTCGAGC
CAGAAACTCTTACCCACACGTCAGTCCGTTGACAAGGGAGGAAATGGCGT
CACTGAGGGTGGTGAGGGAAAGGACTCCCTGTGTGGTGACACACACGAGG
CGCACGCCGCCCCCGCAGCTGGCCCGACTTCTCGCTCAAACCAGCATTCA
TTTCAATATACACCCGCAGCATCTACTTCGGATGCCACGTCTTGTGAACT
TTCTCCCTCGGTGCCTGGGCACTATTCGCAGCCGTCCACCTTGGCGGTGT
CCGCTGGCTCTGCCGGGTCGCACCAGAGGCCTCCCTCTCAGTCCCCGCAG
GGTGCGAACGAGACCGCGCATCCTCCGAACTACCCTTTATCAACGCACCT
CCCAGAGCATGAAAGCAATACCTCCAGGCCCTTGTCGTCGGACGCGGCGA
GCGAGTACGGCGATGGTCCAGGTGGGGCACGCACCGAGTCGGGGATGTGG
CCCATGCCCCCTTCAGGGACGGTGGGTGTGAAGAGAAGGAGGGAGAGCGT
GCGGGGTAGATGGACGGCCGAGGAGCACGAGGCATTCCTGCGAGGACTTC
GGGTGTACGGGCGGGAGTGGAAGCGGGTGGCGGCAGACATCAAGACACGG
AGCAGCGCTCAGATCCGGTCGCACGCCCAGAAGTACTTCGCCAAACTTGC
CAAGGCGCGCGGGATGGCGGGGATGACGCACGCGGGGGGCATGGCTCTGG
ATTCAGAGGGGTCGGGCATGCTTCTCGGGTCGGAGGAGCCTTCAGGGGAC
GGCGCGGGATCGGTTAGACGGCTCCATGGCGTCCCCTCCTTACCCACCGG
GGCCCACCATCGGCACCCCCGCGGGCAGGAAGTGCCATCCCCGGGCACCT
ACACCGCCTTCTCAAGGGGCGGGGGGCCGCACGACGTCAGCCTGGCCTAC
GCGCACTATGGTCTCGCCCAGCACGGACAGATGAGGTCAGGGCTAGGGCT
ACCGGATCCGTACCCAGCGTATGCACCCTACCCTCTCCAGGCGCCGACGC
CGGCTCCGCCCCAACAGGTGCTTCCCCGGGCCGAGGAGGCCGCCCTTCGA
AGGGAGGTCGGGAAAGTGCTGGTCAAGCTTAAGGCGAGGCGCGAGGCGAT
GCTGGTGGCGGGCGGGGACAGGGAGCAGAGGCCGAGATTTGAGCGCTCGG
GGGGCGACAAGTGGGGGGAGGCGGACGAGGGGGAGACGACGCCAGGGGCG
CGCGGGGCACTAGCGGGCCCGAGGCCGGGCGTGGCATCAGGCCGCGAGGG
TGCGGGGCGGGAGGAGCCAGGACAGCAGGAGCGGGTTTGGCGGTATGACG
ACGGGCAGCGAGGAGGGTTCGGGGCGACGGGACAGGAGGGCCCATACGGA
GGGCGCGGGCAGGATCCGAGGCCGCCAGGCGCGTCTCATAGTGCTTTCGG
AAGGGGGGAAGGCCTGAAGACTACCGAGCCGGCGTCTTTCGCTCATGGGG
GCGCGCCTCCTCTCTCTCTTGGACAGCTGTCTTCGAATGACCCCAGACAG
CCTCCGCAGGGAGCCTCCGCCCGCCCGCGTTCGGCCTCCTCCTCCTGCAC
CCTCCTCCCTGCCTCCATCCCTTCTTCCTTTTCGTCCGCTCCTCCCCTCT
GTACCGGTGAGTCCGTGGCGACGGAGCGCGAGGAGGAAAAAGAAGGACAG
ACAGACGAGGACATGGGCCCGGAGGAGGCAACCGGGGTGGGGCCGCGGCG
GGTCGAGTGA

Synonyms

Publications