EWM20940.1, cds9759 (CDS) Nannochloropsis gaditana

Overview
NameEWM20940.1
Unique Namecds9759
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:116175..118034 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20940.1
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100061g3.8573.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:116175..118034 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR006447Myb_dom_plants
IPR001005SANT/Myb
Homology
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|585100896|gb|EWM20940.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1223.38 bits (3164), Expect = 0.000e+0
Identity = 619/619 (100.00%), Postives = 619/619 (100.00%), Query Frame = 0
Query:    1 MSAPKLSNTTHGLHSQNARAPRPVSSFRADRGAPGPGLPPPPPPSPSGSSQKLLPTRQSVDKGGNGVTEGGEGKDSLCGDTHEAHAAPAAGPTSRSNQHSFQYTPAASTSDATSCELSPSVPGHYSQPSTLAVSAGSAGSHQRPPSQSPQGANETAHPPNYPLSTHLPEHESNTSRPLSSDAASEYGDGPGGARTESGMWPMPPSGTVGVKRRRESVRGRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKARGMAGMTHAGGMALDSEGSGMLLGSEEPSGDGAGSVRRLHGVPSLPTGAHHRHPRGQEVPSPGTYTAFSRGGGPHDVSLAYAHYGLAQHGQMRSGLGLPDPYPAYAPYPLQAPTPAPPQQVLPRAEEAALRREVGKVLVKLKARREAMLVAGGDREQRPRFERSGGDKWGEADEGETTPGARGALAGPRPGVASGREGAGREEPGQQERVWRYDDGQRGGFGATGQEGPYGGRGQDPRPPGASHSAFGRGEGLKTTEPASFAHGGAPPLSLGQLSSNDPRQPPQGASARPRSASSSCTLLPASIPSSFSSAPPLCTGESVATEREEEKEGQTDEDMGPEEATGVGPRRVE 619
            MSAPKLSNTTHGLHSQNARAPRPVSSFRADRGAPGPGLPPPPPPSPSGSSQKLLPTRQSVDKGGNGVTEGGEGKDSLCGDTHEAHAAPAAGPTSRSNQHSFQYTPAASTSDATSCELSPSVPGHYSQPSTLAVSAGSAGSHQRPPSQSPQGANETAHPPNYPLSTHLPEHESNTSRPLSSDAASEYGDGPGGARTESGMWPMPPSGTVGVKRRRESVRGRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKARGMAGMTHAGGMALDSEGSGMLLGSEEPSGDGAGSVRRLHGVPSLPTGAHHRHPRGQEVPSPGTYTAFSRGGGPHDVSLAYAHYGLAQHGQMRSGLGLPDPYPAYAPYPLQAPTPAPPQQVLPRAEEAALRREVGKVLVKLKARREAMLVAGGDREQRPRFERSGGDKWGEADEGETTPGARGALAGPRPGVASGREGAGREEPGQQERVWRYDDGQRGGFGATGQEGPYGGRGQDPRPPGASHSAFGRGEGLKTTEPASFAHGGAPPLSLGQLSSNDPRQPPQGASARPRSASSSCTLLPASIPSSFSSAPPLCTGESVATEREEEKEGQTDEDMGPEEATGVGPRRVE
Sbjct:    1 MSAPKLSNTTHGLHSQNARAPRPVSSFRADRGAPGPGLPPPPPPSPSGSSQKLLPTRQSVDKGGNGVTEGGEGKDSLCGDTHEAHAAPAAGPTSRSNQHSFQYTPAASTSDATSCELSPSVPGHYSQPSTLAVSAGSAGSHQRPPSQSPQGANETAHPPNYPLSTHLPEHESNTSRPLSSDAASEYGDGPGGARTESGMWPMPPSGTVGVKRRRESVRGRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKARGMAGMTHAGGMALDSEGSGMLLGSEEPSGDGAGSVRRLHGVPSLPTGAHHRHPRGQEVPSPGTYTAFSRGGGPHDVSLAYAHYGLAQHGQMRSGLGLPDPYPAYAPYPLQAPTPAPPQQVLPRAEEAALRREVGKVLVKLKARREAMLVAGGDREQRPRFERSGGDKWGEADEGETTPGARGALAGPRPGVASGREGAGREEPGQQERVWRYDDGQRGGFGATGQEGPYGGRGQDPRPPGASHSAFGRGEGLKTTEPASFAHGGAPPLSLGQLSSNDPRQPPQGASARPRSASSSCTLLPASIPSSFSSAPPLCTGESVATEREEEKEGQTDEDMGPEEATGVGPRRVE 619          
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|813127013|ref|XP_012197209.1| (hypothetical protein SPRG_03236 [Saprolegnia parasitica CBS 223.65] >gi|641538185|gb|KDO32019.1| hypothetical protein SPRG_03236 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 97.8265 bits (242), Expect = 1.017e-19
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 0
Query:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKARGM 272
            GRWT EEHE+FL GL +YGREWKRVA+ IKTR+SAQIRSHAQKYFAKLAK   M
Sbjct:   39 GRWTDEEHESFLLGLNLYGREWKRVASKIKTRTSAQIRSHAQKYFAKLAKDAEM 92          
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|669142436|ref|XP_008606780.1| (hypothetical protein SDRG_02947 [Saprolegnia diclina VS20] >gi|530741266|gb|EQC39508.1| hypothetical protein SDRG_02947 [Saprolegnia diclina VS20])

HSP 1 Score: 98.5969 bits (244), Expect = 1.991e-19
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 0
Query:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKARGM 272
            GRWT EEHE+FL GL +YGREWKRVA+ IKTR+SAQIRSHAQKYFAKLAK   M
Sbjct:   38 GRWTDEEHESFLLGLNLYGREWKRVASKIKTRTSAQIRSHAQKYFAKLAKDAEM 91          
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|1173943129|gb|OQR92021.1| (hypothetical protein ACHHYP_04136 [Achlya hypogyna])

HSP 1 Score: 97.4413 bits (241), Expect = 2.369e-19
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 0
Query:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKARGM 272
            GRWT EEHE+FL+GL +YGREWKRVA+ IKTR+SAQIRSHAQKYFAKLAK   M
Sbjct:   21 GRWTDEEHESFLQGLHLYGREWKRVASKIKTRTSAQIRSHAQKYFAKLAKDAEM 74          
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|970638623|gb|KUF82046.1| (LHY protein [Phytophthora nicotianae] >gi|970639070|gb|KUF82319.1| LHY protein [Phytophthora nicotianae] >gi|970652386|gb|KUF91058.1| Myosin protein [Phytophthora nicotianae])

HSP 1 Score: 98.9821 bits (245), Expect = 9.751e-19
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 0
Query:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKARGM-----AGMTHAGGMALDSE-GSGMLLGSEEPSGDGAGSVRRL-HG 310
            GRWT +EH++FL GLR+YGREWK+VAA IKTR+SAQIRSHAQKYFAKLA+   M       M  +G +   S+ GS +   S +  G+GA + R++ HG
Sbjct:   99 GRWTEQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLARDDEMRKHSGLSMVMSGPVGYFSDGGSSVAQNSGDEDGEGADASRQMAHG 197          
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|673045547|ref|XP_008876734.1| (hypothetical protein H310_11744 [Aphanomyces invadans] >gi|574467767|gb|ETV94789.1| hypothetical protein H310_11744 [Aphanomyces invadans])

HSP 1 Score: 91.6633 bits (226), Expect = 5.174e-18
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAK 268
            GRWT EEHE+FL GL+ +GREWK+VAA IKTR+SAQIRSHAQKYFAKLAK
Sbjct:   21 GRWTDEEHESFLAGLQEHGREWKKVAAKIKTRTSAQIRSHAQKYFAKLAK 70          
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|695416917|ref|XP_009526968.1| (hypothetical protein PHYSODRAFT_373030, partial [Phytophthora sojae] >gi|348678093|gb|EGZ17910.1| hypothetical protein PHYSODRAFT_373030, partial [Phytophthora sojae])

HSP 1 Score: 87.4261 bits (215), Expect = 7.700e-18
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 0
Query:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAK 268
            GRWT +EH++FL GLR+YGREWK+VAA IKTR+SAQIRSHAQKYFAKLA+
Sbjct:    4 GRWTEQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLAR 53          
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|698810678|ref|XP_009838368.1| (hypothetical protein H257_12759 [Aphanomyces astaci] >gi|574106408|gb|ETV71925.1| hypothetical protein H257_12759 [Aphanomyces astaci])

HSP 1 Score: 90.8929 bits (224), Expect = 1.212e-17
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 0
Query:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKARG--MAGMTHAGGMA-LDSEGS 288
            GRWT EEHE FL GL  +GREWK+VA+ IKTR+SAQIRSHAQKYFAKLAK  G  M  ++  G ++ +DS  S
Sbjct:   24 GRWTDEEHERFLAGLTEHGREWKKVASKIKTRTSAQIRSHAQKYFAKLAKDSGGTMDSLSDDGNLSDMDSWCS 96          
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|953491162|emb|CEG46021.1| (myb-like dna-binding shaqkyf class family protein [Plasmopara halstedii])

HSP 1 Score: 94.3597 bits (233), Expect = 2.328e-17
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAK 268
            GRWT +EH++FL GLR+YGREWK+VAA IKTR+SAQIRSHAQKYFAKL +
Sbjct:   93 GRWTDQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLTR 142          
BLAST of EWM20940.1 vs. NCBI_GenBank
Match: gi|1173950271|gb|OQR98245.1| (valyl-tRNA synthetase [Thraustotheca clavata])

HSP 1 Score: 95.1301 bits (235), Expect = 1.313e-16
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAK 268
            GRWT EEHE FL+GL +YGREWKRVAA IKTR+SAQIRSHAQKYFAK+AK
Sbjct: 1113 GRWTDEEHENFLQGLNLYGREWKRVAAKIKTRTSAQIRSHAQKYFAKIAK 1162          
The following BLAST results are available for this feature:
BLAST of EWM20940.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100896|gb|EWM20940.1|0.000e+0100.00SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|813127013|ref|XP_012197209.1|1.017e-1979.63hypothetical protein SPRG_03236 [Saprolegnia paras... [more]
gi|669142436|ref|XP_008606780.1|1.991e-1979.63hypothetical protein SDRG_02947 [Saprolegnia dicli... [more]
gi|1173943129|gb|OQR92021.1|2.369e-1979.63hypothetical protein ACHHYP_04136 [Achlya hypogyna... [more]
gi|970638623|gb|KUF82046.1|9.751e-1953.54LHY protein [Phytophthora nicotianae] >gi|97063907... [more]
gi|673045547|ref|XP_008876734.1|5.174e-1882.00hypothetical protein H310_11744 [Aphanomyces invad... [more]
gi|695416917|ref|XP_009526968.1|7.700e-1880.00hypothetical protein PHYSODRAFT_373030, partial [P... [more]
gi|698810678|ref|XP_009838368.1|1.212e-1763.01hypothetical protein H257_12759 [Aphanomyces astac... [more]
gi|953491162|emb|CEG46021.1|2.328e-1778.00myb-like dna-binding shaqkyf class family protein ... [more]
gi|1173950271|gb|OQR98245.1|1.313e-1684.00valyl-tRNA synthetase [Thraustotheca clavata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9790rna9790Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications