rna9788, rna9788 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9788
Unique Name	rna9788
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3174
Alignment location	KK037256.1:113470..115596 +

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial carrier protein
Orig transcript id	gnl\|cribi\|Naga_100061g6.8577.mrna
Orig protein id	gnl\|cribi\|Naga_100061g6.8577
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:113470..115596 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100061g6	gene9504	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9788	rna9788-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20944.1	cds9757	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:113470..115596+
coding sequence from alignment at KK037256.1:113470..115596+

mRNA sequence

>rna9788 ID=rna9788|Name=rna9788|organism=Nannochloropsis gaditana|type=mRNA|length=3174bp
GACGGAAGTGTCTTTGCTGTTTGCGGCAACCCTCTAACCCATGTCTTGGC
CGGGCTCTAGGAGTATCCACATGCGCATGAGGTTGGCTGGGCCACATTAC
TTCACCCGACGTATTTCTAACCGCACGACCACCGAAACAAATTTTTAGGA
AGCGTCGACGATTGAATGAATCTTTTCAGTGCTAGCAATGGCATATGTCG
GCAGTGCAGGTTCCGGAGACGGAGAAGAAGAGGGAAGGAGGACACTACAA
CCATTCCAAGCACGACATTACCGCCCCGCTCCATGCTGCTGCTCGGCCTT
GCCTGCGCATTGGGATTCACACATCCTTTACACGCTTTCGCCCCGCGGTC
AAACTTGCCTCCCGGTTTCTTTTCCTGTTCTCACGTCGCGTCCAGAGCAG
GACGGCCGCCAGCACATGCCGCCACTTCCTCGCGCTCTCCGTCCTCCTCC
GCAACGAGAATTTTCTCCGCCCTGGTCCGAGAGGGTGAAGGCGAAGACGA
GGACAAAGAAGAGGATTGGGCAATGCTAGAGTTCAAGGACATGCTCTTGG
GCGGCAAAAAGAAAGCGAAGCCGCGGGCGCCGAAGCTCCCTCCTCGAGGC
CCCAGCCCCGTTCAGCTTCAGCCGGAAAGCCCCGTGGAGATATGGCACCA
GGGACACTTGGCCTTCGGGAACTACGAGGGACGCCTTAAAAAGGCATCGA
TCAACGTGCGGCTGGAGCACGGGGAAAGGGTGGCCGTGGACGCAGGGCAG
CTCACGGGGATATGGGCCGCCCCCGTCACGAGCGAGCAGGAGCAGACGCC
TGCGTCCTGGGCGTTGGAGGAGCAGGAGGGCGGTCCAGCGACGCCCGAGG
CGTGGGCGGTAGTGCGGCTGCGGGCAGGGAGGGCGATGAAGAGCCTGAGC
CCACGGGCCCTCTCATTGGAGCGCTTCTGGTCGTTGGCCATGCACCGGTG
GCGGCGGGACAAGGCCCCGGTCGACTCCCACCACCTGGCGGCCTTCCTCT
TCCACCGGCCCGAGTACGAGGCCGTGCTCAAGGAGGAGCAGCAGGAGCGC
ACGCGGGAGTCGGAGACCCTAGACGGGTCGGGGAAAGATGCCTTCACACT
GCGGCTGCCGAACGTCAGCCCCGCTCAGCGGTATGCAGCCGCTGTGCTCC
TGGCGGCGGAGACCTTTCGATTCAAACGCAGCGTGCCTCGGGTTTTGAGC
CTGGGATCTCAGGCGGCAGGGTCGAAGGTGGGAGAAGAGAGCGTGCCGGG
GTTGTTGGTGGAGGGGGAGGGGTTCCGGCCCATGGAGCAGTCAGTAGTGC
ACTCGAGGGAGGTGCTGGCCTTCGTGCAGGCGGTGCGTCACCATGAGGAG
AGGCGTGCCTTGCTCCGGTTGGACAAGCTGCTGGAGGATACTACGGAGGG
AGGGGAGGAGGAGGAGGGGGGGGGGGAGGACGGAGCAGGGGGAGGAGGCT
GGGAGGAGCAGCCGGGTGGCCGGGCGGGCTCGGCCCAGTGGGACGCCTCG
CAGTGGCGACTACTGCACCATCTGGAGGTGTTCAGCCTGGGGGCGGGGGT
GGAAGGGCTGTCGAGCACCTCCCAGCAGGTCCTGAAGGCACTTGGAGAGC
CGACCACGCCCGAAGGGGCCAAGCGGGTGCTCCTGCGGGCGGGGTATTGG
ACCGAGAGGCGGGGCGCGGAGCCGGGGCGGGAGGACAATGTGGCAGCGAT
GACGGCGGCGGTCCAGCGGATGGCCACGCCCTGGCCGGAGGATATCTTGG
AGCTGGCGAAGGAGGCGTTGGCCAAGACGCAGAGGCGACGGGCGGCCCTG
GCCAAGGTCCAGCGCCCGAACCGGCCGGGGCGGAGGGGTCCGCACGGCCG
CCACGACTACCGGGCCTCGGGCCTGGGGGCCTACGCCTTGGACCCGCCGG
GGTCGGAATTCGCAGACGACGCCCTGGGTTTCGATCCCGAGACGGGGGAG
GTGCTCATCCACATCGCGGACGTGCAGGCGTTGGTGGAGGGCACCCCGGA
GCTGGAGGCCCTGGCGCGGCAACGCGGGGAGGCGATCTACCTGCCTGACG
GGCCGTTGCACTTGCTACCCCCGCCCGCCCTCCAGGCGGCCTCCCTCAGC
GACCGGGAGGTGAACGAGTGTGTGACGGCGGCCGTGACGCTGGGCCCGGA
CGGCAGCGTCCTGAACGCCCGCTTGCTCCTGAGCCTAGTGCCCCCCATCA
CCCGCATCCGATACGACGAGGCCAACGAGCTGCTCTCCGCGTCCAGCCTC
GAGGACCTGCCTGCCTACCGGCGTCAGGCCGCGCAGGACCTGCACGTGTT
GCTGCAAGCCTCCCAGGCCCGACGTGCGTTGACGAAACGGAGCTTCTCGG
AGGGGAAACGCGTCTCGCGAGTGCGGCGGAACACCGAGGGGGAACTGGAG
GCCATCGGCTTCCAGCGCACGCCTGCGCACCTGATGGTGGACGAGTTCCT
GGCCCTATACTCGGAGGCGGGCCGCCGATTCCTCAAGGCCCACGCGGTCA
CCCTCCCCCTGGCCCCGGGCTCGGTCTCGGGCGGCCTGGACGCGGCGCGC
TTCGGCACTGGGCCCCTCCGGCGTTACACGGACGTGCTGGCGCAGCAGCA
GATGGTCTCCGTCTTGAAAGGCCGTCCCCCCTTGTCCAAGTCGGAAGTGA
TCCGGCGCATGACTCAGGTGAACTGGCAGAGTAAGGCCTCCCAGAAGCTC
CGCTCCGCCTCCAGGGGCAAGGTCCTCCTCGAGTCCTTCGCCACCTACTG
CGCCGCCAAAGCCAAGGCGGCCGGCCAGGCCTACGCAGTGGTCCGAGCCA
CGGCCACGGGGACGGGCACGGAGGTGATGCTGCCCGACGCGGGCTTGCGT
TCCTACGTGCGCCTGCCCGGGGGGTGGAAGAAGAAGGGGAAGGATGGGGC
CGGTTCCCGGCGGCTGTTTGATTTGGAGGCGGGAAAGGAGTTCGAGGTGC
ATGTTTTGCGGGTGGACCCGGCTAGAGGGAGCATCGAGCTGGAGTTTGCT
CGTGAGGAGGACGCGGTCGGGATACCGATGCAGGAGGAGGAATGAGGCGA
GGAGCGCAAGGAGGAAGAGGGCGTGAGAAAGAGTTTTTGGCGCGAAAGTA
CACGTACGGCCCGAACGACATGATATAAACCTGCGTTGTTTTAAAAAAAC
ACGAGTCTTATAAGCTCTGCACGA

protein sequence of rna9788

>rna9788-protein ID=rna9788-protein|Name=rna9788|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVR
DFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQ
TNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDY
VFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTS
GMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF

mRNA from alignment at KK037256.1:113470..115596+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9788 ID=rna9788|Name=rna9788|organism=Nannochloropsis gaditana|type=mRNA|length=2127bp|location=Sequence derived from alignment at KK037256.1:113470..115596+ (Nannochloropsis gaditana)
CCTTGCCAGCTTAAAAGCCTCGGAGACCCGAGTATGGTCCCGGCTTACCC
CAATGGGAACACAAGTAGTCATCAACGCCGCCTTCGCTTACCATTTCCAC
ATTCTTATGCTTTCTTTGAAACCTGACAGAAAGCGCAGTCATGCATACGT
CCTTTTCTCAGTCCACGGCGACCGCCGAGGGTTGCAGGCGCGTGCAAGCA
GCCAGCATGGGGGGCGGGTCCGGCGGAGACAGTAAGACAGCCGCCGCACG
CATTCTCGGCTCAGGCTCTGCCGGTGTTTTTGAATTGGTGAGATTTTATT
TAGTCGCTAGCATGCCATGTGGCTGTGATTTGAAATCTTATTTCCGCTTT
TAAATTTTCCGCACGTAGGCCTTATTCCACCCATTCGACACCGCGGCGAA
GCGTTTGATGAGCTGGGAGGTAAGGACTGTGTCCCGAATCtcggaggaaa
gaaaaatgtggTGGCATCCCTTGTATGATAGTTTACGTGGAGCGAACACC
CTTTCGAGGAACGAGGAGGGTGCCAGTGGCGCGGGTGCCGCGAGGCCTCT
GCCGGCTGCCCAGCCAGCCTTCTTTGGGAAatgagagagaagaagggttC
TGCGACTCACAagtgctcctcctccctcccaatcaCCCCCGTGACAGGGT
CGGATCATAGTGGCCGGGCACACCATGACCAACCTGAACAACGCGGTCTT
CCGCAATCAAGCGGCCGCGGCCCCCATAAGCAAGtggctctctctcttcc
ccggCGTCACCTTTGGCGCCGCTTACAAGGTCCTCCAGCGCGCCTATAAA
TTCGGAGGTCAGCCCTTCGTGCGGGATTTCCTGACGCAGCACTATCAGGA
AAACTTCGAGAAcgcggtggggaagaagaacggGAAGACTATGATCTACG
CCACTGCCGGCTCCATcatgggggtgggggagatcGTTCTGCTGCCTTTG
GACGTGCTCAAGATCAAGGCGCAGACGAATCCGGAGGCTTTCAAGGGGCG
TGGCCTTTTCAAGATcttcgcggaggagggctggggcCTGTACCGAGGGG
CGACCTGGACAGCGGCTCGGAAcgctccgggtagctttgcGCTTTTTGGA
GGCTCGGCCGCGATGAAAGACTACGTCTTCAAGCTCGAAAAGTACAGCGA
CGCCACGTTCTTTCAGGACTCTATGGCTTCGATAGCGGGGGCTGTTGCGT
CCATTAGCGTGGCGCAGCCGCTggtaagaaaggagggggagagaaagcag
ggaggaaggcgggggagaaaggggagaaggagtgtCCTTtgcgtggggga
gaaggagtgtCCTTCGGGTGGGTGGTACGGAAGCGAGCGGTTTCAGGATT
TGGTGGCGCCTGTGTGGGCGTTCTCAGCTCCTCGCAACGTATGCTGACCC
gtgctttcccttcttttctcgcaCAGGACGTGATCAAGACGCGCATTCAG
AAGCGCGATTTCAAGGACAAGACATCGGGGATGAGCATCCTGAGCGACCT
GGTGAAAAATGAGGGTTTTGGCGCCTTCTTTAAGGGACTGACGCCCAAAC
TGATCGTGATCGGGCCCAAGCTGGTCTTCTCTTTCACCATCGCGCAGCAG
CTCATGTCCTTCTTCGAACGGCGCTTCTAAagccagggcgggaaggagga
cgctaGCTACGGAAAGGGGCGAGCGGTCCATTTTGAGCGAGGACTGCcgc
tgaggagggaaaaggcatgAGGCAAGCGTCGCAGGAGGAGCATCCCATGA
AATCCAGGACACACGGGGAATTCcaggagcgaggagagggcgtgTTTCAA
GCCTTGCGTGTCCGGtgggcgaagaaagagggggactGGATTGTTTTTGT
AGGCGCCGGAGCggaaagggcaagggagggatgtatGTGGGGGGGACTGT
CCGGATCCACCCCGCAGACATACCACACCAACAATTTTTGCATGTGTTAA
TCTTATGGCATAAACGACAAAGAACACGCTATAGCGAGAGGATAGGCAGG
CCACTGGCTGAGCTGGATGTTTTTTTTTGTGGCCGAGGTGGACGGAGCAC
TTCAGAGAAGCAAgtgaaaggagaaaagaccGCCCTGaatgcctcctcca
ggcctcAGAAGACATCTGCTTTAACGG

Coding sequence (CDS) from alignment at KK037256.1:113470..115596+

>rna9788 ID=rna9788|Name=rna9788|organism=Nannochloropsis gaditana|type=CDS|length=1506bp|location=Sequence derived from alignment at KK037256.1:113470..115596+ (Nannochloropsis gaditana)
ATGACCAACCTGAACAACGCGGTCTTCCGCAATCAAGCGGCCGCGGCCCC
CATAAGCAAGtggctctctctcttccccggCGTCACCTTTGGCGCCGCTT
ACAAGGTCCTCCAGCGCGCCTATAAATTCGGAGGTCAGCCCTTCGTGCGG
GATTTCCTGACGCAGCACTATCAGGAAAACTTCGAGAAcgcggtggggaa
gaagaacggGAAGACTATGATCTACGCCACTGCCGGCTCCATcatggggg
tgggggagatcGTTCTGCTGCCTTTGGACGTGCTCAAGATCAAGGCGCAG
ACGAATCCGGAGGCTTTCAAGGGGCGTGGCCTTTTCAAGATcttcgcgga
ggagggctggggcCTGTACCGAGGGGCGACCTGGACAGCGGCTCGGAAcg
ctccgggtagctttgcGCTTTTTGGAGGCTCGGCCGCGATGAAAGACTAC
GTCTTCAAGCTCGAAAAGTACAGCGACGCCACGTTCTTTCAGGACTCTAT
GGCTTCGATAGCGGGGGCTGTTGCGTCCATTAGCGTGGCGCAGCCGCTgG
ACGTGATCAAGACGCGCATTCAGAAGCGCGATTTCAAGGACAAGACATCG
GGGATGAGCATCCTGAGCGACCTGGTGAAAAATGAGGGTTTTGGCGCCTT
CTTTAAGGGACTGACGCCCAAACTGATCGTGATCGGGCCCAAGCTGGTCT
TCTCTTTCACCATCGCGCAGCAGCTCATGTCCTTCTTCGAACGGCGCTTC
TAAATGACCAACCTGAACAACGCGGTCTTCCGCAATCAAGCGGCCGCGGC
CCCCATAAGCAAGtggctctctctcttccccggCGTCACCTTTGGCGCCG
CTTACAAGGTCCTCCAGCGCGCCTATAAATTCGGAGGTCAGCCCTTCGTG
CGGGATTTCCTGACGCAGCACTATCAGGAAAACTTCGAGAAcgcggtggg
gaagaagaacggGAAGACTATGATCTACGCCACTGCCGGCTCCATcatgg
gggtgggggagatcGTTCTGCTGCCTTTGGACGTGCTCAAGATCAAGGCG
CAGACGAATCCGGAGGCTTTCAAGGGGCGTGGCCTTTTCAAGATcttcgc
ggaggagggctggggcCTGTACCGAGGGGCGACCTGGACAGCGGCTCGGA
AcgctccgggtagctttgcGCTTTTTGGAGGCTCGGCCGCGATGAAAGAC
TACGTCTTCAAGCTCGAAAAGTACAGCGACGCCACGTTCTTTCAGGACTC
TATGGCTTCGATAGCGGGGGCTGTTGCGTCCATTAGCGTGGCGCAGCCGC
TgGACGTGATCAAGACGCGCATTCAGAAGCGCGATTTCAAGGACAAGACA
TCGGGGATGAGCATCCTGAGCGACCTGGTGAAAAATGAGGGTTTTGGCGC
CTTCTTTAAGGGACTGACGCCCAAACTGATCGTGATCGGGCCCAAGCTGG
TCTTCTCTTTCACCATCGCGCAGCAGCTCATGTCCTTCTTCGAACGGCGC
TTCTAA

Synonyms

Publications