EWM20944.1, cds9757 (CDS) Nannochloropsis gaditana

Overview
NameEWM20944.1
Unique Namecds9757
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:114144..114692 +
Alignment locationKK037256.1:114896..115099 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20944.1
Productmitochondrial carrier protein
Orig transcript idgnl|cribi|Naga_100061g6.8577.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:114144..114692 +
KK037256.1supercontigKK037256.1:114896..115099 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Homology
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|585100899|gb|EWM20943.1| (mitochondrial carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 509.605 bits (1311), Expect = 0.000e+0
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query:    1 MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 250
            MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF
Sbjct:   76 MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 325          
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|585100900|gb|EWM20944.1| (mitochondrial carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 506.523 bits (1303), Expect = 0.000e+0
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query:    1 MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 250
            MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF
Sbjct:    1 MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 250          
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|672818520|gb|KFH63421.1| (hypothetical protein MVEG_10831 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 345.125 bits (884), Expect = 1.697e-116
Identity = 159/250 (63.60%), Postives = 203/250 (81.20%), Query Frame = 0
Query:    1 MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 250
            + N N  +F++ A AA + K+ SLFPG+ F A YK++QR YKFGGQPFV +F+ +HY+ +F +  G+K GKTM++A AGS++G+GEI LLPLDVLKIK QTNPEAF+GRG+FKI A+EG GLYRGA WTAARNAPGSFALFGGSA +K+++FKLE Y+ ATFFQ+  ASI G+VASI+VA PLDV+KTRIQ R F D   G++I+  +++NEGFG+FFKGL PK++V+GPKLVFSFTIAQQL+  F   F
Sbjct:   59 LANTNKVIFKDAANAAFLKKYASLFPGLGFAAGYKIMQRVYKFGGQPFVNEFINRHYKSSFNSVFGEKTGKTMMHAAAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGVFKIVADEGMGLYRGALWTAARNAPGSFALFGGSAFVKEWIFKLEDYNKATFFQNFCASIGGSVASITVAAPLDVVKTRIQNRHFDDPEGGVTIIKKMIRNEGFGSFFKGLLPKILVVGPKLVFSFTIAQQLIPMFHNYF 308          
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|299470173|emb|CBN78201.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 342.813 bits (878), Expect = 1.532e-115
Identity = 162/248 (65.32%), Postives = 198/248 (79.84%), Query Frame = 0
Query:    1 MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFER 248
            M  LN  +F+  +    + K+LSLFPG+ FGA YK+LQR YKFGGQPFVRD++T+++ E FE A G++  K+M+ ATAGSI+GVGEI LLPLDVLKIKAQTNPE+  GRG+  IFA+EG GLYRGA WTAARNAPGSFALFGG++ MK+YVFKLE+  DAT FQ   ASIAGAV+SI+VA PLDVIK R+Q R F    SGM+I+  L+  EG GAFFKGLTPK+IV+GPKL+FSFT+AQ+L+SF E 
Sbjct:   61 MEALNKVIFKETSQMGTVRKYLSLFPGLGFGAGYKILQRVYKFGGQPFVRDYMTRNHSERFERAFGQRRAKSMMEATAGSIIGVGEIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEH 308          
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|1032641345|gb|OAQ22743.1| (mitochondrial carrier [Mortierella elongata AG-77])

HSP 1 Score: 342.813 bits (878), Expect = 1.632e-115
Identity = 159/250 (63.60%), Postives = 202/250 (80.80%), Query Frame = 0
Query:    1 MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 250
            M N N  +F++ A AA + K+ SLFPG+ F A YK+ QR YKFGGQPFV +FL +HY++ F +  G+K GKT+++ATAGS +G+GEI LLPLDVLKIK QTNPEAF+GRG+ +I A+EG GLYRGA WTA RNAPGSFALFGGSA +K+++F LE YS ATFFQ+  ASI G+VASI+VA PLDV+KTRIQ R F +  SGM+I+ +++++EGFGAFFKGL PK++V+GPKLVFSFTIAQQL+  F  +F
Sbjct:   60 MANTNKVIFKDAANAAFLKKYASLFPGLGFAAGYKIAQRIYKFGGQPFVNEFLNRHYKKEFHSVFGEKTGKTIMHATAGSFVGIGEIALLPLDVLKIKRQTNPEAFRGRGVMRIVADEGMGLYRGALWTAGRNAPGSFALFGGSAFVKEWIFGLEDYSKATFFQNFCASIGGSVASITVAAPLDVVKTRIQNRHFDNPESGMNIIRNMIRHEGFGAFFKGLLPKILVVGPKLVFSFTIAQQLIPLFHHKF 309          
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|758358832|emb|CEP18870.1| (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 340.887 bits (873), Expect = 5.605e-115
Identity = 161/247 (65.18%), Postives = 198/247 (80.16%), Query Frame = 0
Query:    4 LNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 250
            +N  VF++ A A  + K+ SLFPG+ F A YKV QR YKFGGQPFVRD+L +H+++ F N  G+K GKTM++ATAGS++G+GEI LLPLDVLKIK QTNPEAF+GRG   I  +EG GLYRGA WTAARNAPGSFALFGGSA +K+Y+F L  Y+ ATFFQ+  ASI GAVASI+VA PLDV+KTRIQ R+F++  SG  I+ DLVKNEGF  FFKGLTPK++V+GPKL+FSFT+AQQL+  F + F
Sbjct:   62 VNQVVFKDAANATILKKYASLFPGLGFAAGYKVAQRVYKFGGQPFVRDYLNKHHRDLFVNTFGEKTGKTMMHATAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLTIVKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYLFSLNDYNKATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFENPESGFKIVKDLVKNEGFAGFFKGLTPKILVVGPKLIFSFTVAQQLIPVFHKMF 308          
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|671695313|emb|CDS10033.1| (hypothetical protein LRAMOSA02710 [Lichtheimia ramosa])

HSP 1 Score: 340.117 bits (871), Expect = 1.078e-114
Identity = 158/245 (64.49%), Postives = 199/245 (81.22%), Query Frame = 0
Query:    4 LNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFER 248
            LN  VF++ A  A + K+ SLFPG+ F A YKV QR YKFGGQPFV+D+L  H++  F +  G+K GKT+++ATAGS++G+GEI LLPLDVLKIK QTNPEAF+GRG   I  +EG GLYRGA WTAARNAPGSFALFGGSA +K+Y+F L+ Y+ ATFFQ+  ASI GAVASI+VA PLDV+KTRIQ R+F +  SG++I+ DL+K EGFG FFKGLTPK++V+GPKL+FSFT+AQQL+ FF++
Sbjct:   62 LNKIVFKDAANEAFLKKYASLFPGLGFAAGYKVAQRVYKFGGQPFVKDYLNTHHKSTFTSLFGEKTGKTIMHATAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLTIIKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYIFHLDNYNQATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFDNPESGLNIIKDLIKKEGFGGFFKGLTPKILVVGPKLIFSFTVAQQLIPFFDK 306          
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|1183484194|gb|ORZ07954.1| (mitochondrial carrier domain-containing protein [Lobosporangium transversale])

HSP 1 Score: 340.502 bits (872), Expect = 1.157e-114
Identity = 159/250 (63.60%), Postives = 203/250 (81.20%), Query Frame = 0
Query:    1 MTNLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 250
            + N N  +F++ A AA + K+ SLFPG+ F A YK++QR YKFGGQPFV ++L ++++ +F    G+K GKTM++ATAGS++G+GEI LLPLDVLKIK QTNPEAF+GRG+ KI A+EG GLYRGA WTA RNAPGSFALFGGSA +K+++F LE YS ATFFQ+  ASI G+VASI+VA PLDV+KTRIQ R+F +   G+SI+  +V+NEGFGAFFKGL PK++V+GPKLVFSFTIAQQL+  F R+F
Sbjct:   60 LANTNKVIFKDAANAAFLKKYASLFPGLGFAAGYKIMQRVYKFGGQPFVNEYLNRNFKGSFNGVFGEKTGKTMMHATAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGVMKIVADEGMGLYRGALWTAGRNAPGSFALFGGSAFVKEWIFGLEDYSKATFFQNFCASIGGSVASITVAAPLDVVKTRIQNRNFDNPEGGVSIIKKMVRNEGFGAFFKGLLPKILVVGPKLVFSFTIAQQLIPLFHRKF 309          
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|1183494548|gb|ORZ18212.1| (mitochondrial carrier domain-containing protein [Lobosporangium transversale])

HSP 1 Score: 340.502 bits (872), Expect = 1.306e-114
Identity = 158/246 (64.23%), Postives = 199/246 (80.89%), Query Frame = 0
Query:    5 NNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 250
            N  +F+  A AA + K+ SLFPG+ F A YK+ QR YK+GGQPFV ++L  HY+  F    G+K GKTM++ATAGS++G+GEI LLPLDVLKIK QTNP+AF+GRG+FKI A+EG GLYRGATWTAARNAPGSFALFGGSA +K+Y+F+L+ Y+ ATFFQ+  ASI G+VASI+VA PLDV+KTRIQ R+F     GMSI+ ++V+NEGFGAFFKGL PK++V+GPKLVFSFT+AQQL+     +F
Sbjct:   65 NKVIFKEAADAAFLQKYTSLFPGLGFAAGYKISQRVYKYGGQPFVNEYLNSHYKSWFHRVFGEKTGKTMMHATAGSLVGIGEIALLPLDVLKIKRQTNPDAFRGRGVFKIVADEGMGLYRGATWTAARNAPGSFALFGGSAFVKEYIFRLDDYNKATFFQNFCASIGGSVASITVAAPLDVVKTRIQNRNFDSPEGGMSIIRNMVRNEGFGAFFKGLLPKILVVGPKLVFSFTVAQQLIPMLHIKF 310          
BLAST of EWM20944.1 vs. NCBI_GenBank
Match: gi|1069947741|ref|XP_018294288.1| (hypothetical protein PHYBLDRAFT_180588 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026591792|gb|OAD76248.1| hypothetical protein PHYBLDRAFT_180588 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 338.961 bits (868), Expect = 2.956e-114
Identity = 161/247 (65.18%), Postives = 200/247 (80.97%), Query Frame = 0
Query:    4 LNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFERRF 250
            L+  +F++ A  + + K+ SLFPG+ F A YKV QR YKFGGQPFV+D+L  ++Q  F NA G+K GKT+++ATAGS++G+GEI LLPLDVLKIK QTNPEAF+GRG  KI  +EG GLYRGA WTAARNAPGSFALFG SA +K+Y+F LE YS ATFFQ+  ASIAGAVASI+VA PLDV+KTRIQ R+F +  SG++I+ DL+K EGF  FFKGLTPK++V+GPKL+FSFTIAQQL+  F+R F
Sbjct:   63 LDLVIFKDAAQKSFLKKYASLFPGLGFAAGYKVAQRVYKFGGQPFVKDYLNTNHQATFTNAFGEKTGKTVMHATAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLKIVQDEGMGLYRGAGWTAARNAPGSFALFGASAFVKEYMFHLEDYSKATFFQNFCASIAGAVASITVAAPLDVVKTRIQNRNFDNPESGVNIVKDLIKKEGFAGFFKGLTPKILVVGPKLIFSFTIAQQLIPVFDRAF 309          
The following BLAST results are available for this feature:
BLAST of EWM20944.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100899|gb|EWM20943.1|0.000e+0100.00mitochondrial carrier protein [Nannochloropsis gad... [more]
gi|585100900|gb|EWM20944.1|0.000e+0100.00mitochondrial carrier protein [Nannochloropsis gad... [more]
gi|672818520|gb|KFH63421.1|1.697e-11663.60hypothetical protein MVEG_10831 [Mortierella verti... [more]
gi|299470173|emb|CBN78201.1|1.532e-11565.32conserved unknown protein [Ectocarpus siliculosus][more]
gi|1032641345|gb|OAQ22743.1|1.632e-11563.60mitochondrial carrier [Mortierella elongata AG-77][more]
gi|758358832|emb|CEP18870.1|5.605e-11565.18hypothetical protein [Parasitella parasitica][more]
gi|671695313|emb|CDS10033.1|1.078e-11464.49hypothetical protein LRAMOSA02710 [Lichtheimia ram... [more]
gi|1183484194|gb|ORZ07954.1|1.157e-11463.60mitochondrial carrier domain-containing protein [L... [more]
gi|1183494548|gb|ORZ18212.1|1.306e-11464.23mitochondrial carrier domain-containing protein [L... [more]
gi|1069947741|ref|XP_018294288.1|2.956e-11465.18hypothetical protein PHYBLDRAFT_180588 [Phycomyces... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9788rna9788Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications