rna9785, rna9785 (mRNA) Nannochloropsis gaditana

Overview
Namerna9785
Unique Namerna9785
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length819
Alignment locationKK037256.1:105295..106757 +

Link to JBrowse

Properties
Property NameValue
Product40s ribosomal protein s23
Orig transcript idgnl|cribi|Naga_100061g9.8554.mrna
Orig protein idgnl|cribi|Naga_100061g9.8554
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:105295..106757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100061g9gene9501Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9785rna9785-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20921.1cds9754Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9785 ID=rna9785|Name=rna9785|organism=Nannochloropsis gaditana|type=mRNA|length=819bp
ATGGAGCCCACGCCCGTCACTGCCATCTTACCGCGCGGGGACCGCACCTT
CCAGGGGCGCCCGACGCTTTTCCAGGGCGTCCGCTACGTCCTCTCGTCCC
CCCGTCTTGTGCGGCTCATTCTGGTCCTCTCCCTCACATCATTCTTGAAC
GGCGGGCTCTTCCTCTCCGTGAAGCTGCTCACCCTCCACTCGGAAGGCTT
CGACATGCAGCCCCGCGAGTCCTCCACCATCCTTCTTCTCTTCGGCTGCT
GGGCCATGGCCTTTAACGCTTGCCTCTTCCGACCCCTCGTCCGTCGCCTG
GGCCCCAAGCGGGCCAACATGCTGGGTCTCCTCGGCACAAGCCTCGGCGT
CCTCGTCCTACCCCTCGCCGACGCCTTCGTGGAGGCGCGCACCTGGGCGC
TGTGGACCTGTACTGTCGCCAGCGTCCTTGTCTTCGCTTCGAGCTACATG
CTCGTCAACAGCCTCCTGGTTGGCTTCATATCCGCGCACGCCTCCCCCAG
CATGCAGGGGATCACCCAGGGTCTTGCGGTCTCCCTGAGCTCCAGCCTCT
CAGGACTCGAGCCGGTCGTTTTAGGCTCAGTGGCAAACGCGGCGCAGGAG
GCGAGACTCCCGGTCTTGACTTTCTTGTTCCTCACTTGTGGGTACTTGGT
ATCATTCCTAGCCCTCAGAGGTGTTCCACGGGCTGCGCTTGAAGGGGAGT
GTAATTTATTGAATGTCGAGGGTGTTGATTTTCCCCCCATCAGACTCGAT
GAAATAACAATTGTATGTAAAGAATGCTTGTATTTCAAGAAATGGCTACA
ATTTAAAGCTGACGAATAA
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protein sequence of rna9785

>rna9785-protein ID=rna9785-protein|Name=rna9785|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAK
GIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDEND
EVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS
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mRNA from alignment at KK037256.1:105295..106757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9785 ID=rna9785|Name=rna9785|organism=Nannochloropsis gaditana|type=mRNA|length=1463bp|location=Sequence derived from alignment at KK037256.1:105295..106757+ (Nannochloropsis gaditana)
ATAAGTCTCAAATGCCGTCCAAGTTTTGGCTTACCCCGCTTTGCAAGGAC
TTCCACCGCTCTTTGTTTTGGAGGCGCATGGGGCATTTCATGTTCCACCG
GACCATGGCTACCTTGGATCGAGGCATGCTGTGTGGCGGGGAGGCTTCAT
ACTGACCAATTCTTGTCTCTATTCCCTTTGTGTCATCGTGTTTGAGTGAA
CTATTGTCAATCAATCTATTCAAAAAATCAaaccttttccccctccattc
caTGCACAATATAGAGTTAACCCACAAACATGGGGAAAGGGTAAGTCATG
GGAATAGGTTGCTagaggggagacgaggaatgaagaaagaagggagccgG
GGTTGTTGATGAGGGATTATAGCACGCGCCATCAGAAGAGTGCACCCTCA
CAAAGTCTTTCTCCCATTATGTCTGTGATAGTAAACCTGCGGGGTCCAAT
GCAGGGCGCAAGCTGCGAGTGCACAGACGCAATGAGAAGTGGGCAAGCAA
GAGGTGGAACAAGGCTCACTCGGTCACGCACATGAAGGCCAATCCCTTGG
GTGGTGCTGCCATGGCCAAGGGCATCGTCCTAGAGAAGATGTACGTCTTA
TTCATACTCGCATGCGTTGTTCATCGCGCAGAAGGAAGATTGAGAGCGTG
AAAATTTGAGAGGGCAACAGGTCGATGGCTATTCCTTTTCACAATTATCT
GCCATCCCTTTCACAGTGGAATCGAAGCCAAACAGCCTAACTCGGCTATT
CGCAAGTGTGTGAGAGTACAGCTGATTAAGAATGGAAAGAAGATTGCCGC
TTTCGTGCCCCGGGACGGTTGCCTCAACTTTGTGGACGAGAATGTGCGTG
CTGGGGGAAGGAacagaggagagaggagctgTATGATAGGGGCGAATGGT
TTCGACAGGACGACATTGTAGAGGCAAAGGGCATAAGATGTATATTTCCC
GATATAATTTACAGGACGAAGTGCTGATCGCTGGTTTTGGTCGCTCTGGT
CACGCCGTGGGCGACATTCCCGGTGTCCGCTTTAAAGTCATCAAGGTCTC
TGGTGTGGGGCTGCTTGCACTTTTCAAGGACAAAAAGGTGCGCTTTCTGC
TCTTGAGGTGGCGAAGATGAGAATATTTCCACGCATATTGGATTATATTG
GCGGGCATTTTCATGACAGAAGAGGTCGGTTAATGACGTGTCTTATTTTA
CTTTCCCCCAAAATACAGGAGAAGCCTCGATCGTGAAAGTTGAGACGTTC
GTGGGTCTTCAATGTGACTGGAGGAACGAGAGTTGATCATCAACCCTCAT
TCGACCGGTTGGAGTCTAAGAATAAAATGTTCAAACGTGGGGGCTTGCCG
TGGGACTGGTCTCTCTGAATGAAAGGGGCGGGTGACCGTGCAAACGCGCA
AAGTTGACTATGGGAGTTCACTTCAGAAAGAACAAGAATAGCGGTTTTCT
CCACTTGCGTTGC
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Coding sequence (CDS) from alignment at KK037256.1:105295..106757+

>rna9785 ID=rna9785|Name=rna9785|organism=Nannochloropsis gaditana|type=CDS|length=2190bp|location=Sequence derived from alignment at KK037256.1:105295..106757+ (Nannochloropsis gaditana)
ATGGGGAAAGGTAAACCTGCGGGGTCCAATGCAGGGCGCAAGCTGCGAGT
GCACAGACGCAATGAGAAGTGGGCAAGCAAGAGGTGGAACAAGGCTCACT
CGGTCACGCACATGAAGGCCAATCCCTTGGGTGGTGCTGCCATGGCCAAG
GGCATCGTCCTAGAGAAGATTGGAATCGAAGCCAAACAGCCTAACTCGGC
TATTCGCAAGTGTGTGAGAGTACAGCTGATTAAGAATGGAAAGAAGATTG
CCGCTTTCGTGCCCCGGGACGGTTGCCTCAACTTTGTGGACGAGAATGAC
GAAGTGCTGATCGCTGGTTTTGGTCGCTCTGGTCACGCCGTGGGCGACAT
TCCCGGTGTCCGCTTTAAAGTCATCAAGGTCTCTGGTGTGGGGCTGCTTG
CACTTTTCAAGGACAAAAAGGAGAAGCCTCGATCGTGAATGGGGAAAGGT
AAACCTGCGGGGTCCAATGCAGGGCGCAAGCTGCGAGTGCACAGACGCAA
TGAGAAGTGGGCAAGCAAGAGGTGGAACAAGGCTCACTCGGTCACGCACA
TGAAGGCCAATCCCTTGGGTGGTGCTGCCATGGCCAAGGGCATCGTCCTA
GAGAAGATTGGAATCGAAGCCAAACAGCCTAACTCGGCTATTCGCAAGTG
TGTGAGAGTACAGCTGATTAAGAATGGAAAGAAGATTGCCGCTTTCGTGC
CCCGGGACGGTTGCCTCAACTTTGTGGACGAGAATGACGAAGTGCTGATC
GCTGGTTTTGGTCGCTCTGGTCACGCCGTGGGCGACATTCCCGGTGTCCG
CTTTAAAGTCATCAAGGTCTCTGGTGTGGGGCTGCTTGCACTTTTCAAGG
ACAAAAAGGAGAAGCCTCGATCGTGAATGGGGAAAGGTAAACCTGCGGGG
TCCAATGCAGGGCGCAAGCTGCGAGTGCACAGACGCAATGAGAAGTGGGC
AAGCAAGAGGTGGAACAAGGCTCACTCGGTCACGCACATGAAGGCCAATC
CCTTGGGTGGTGCTGCCATGGCCAAGGGCATCGTCCTAGAGAAGATTGGA
ATCGAAGCCAAACAGCCTAACTCGGCTATTCGCAAGTGTGTGAGAGTACA
GCTGATTAAGAATGGAAAGAAGATTGCCGCTTTCGTGCCCCGGGACGGTT
GCCTCAACTTTGTGGACGAGAATGACGAAGTGCTGATCGCTGGTTTTGGT
CGCTCTGGTCACGCCGTGGGCGACATTCCCGGTGTCCGCTTTAAAGTCAT
CAAGGTCTCTGGTGTGGGGCTGCTTGCACTTTTCAAGGACAAAAAGGAGA
AGCCTCGATCGTGAATGGGGAAAGGTAAACCTGCGGGGTCCAATGCAGGG
CGCAAGCTGCGAGTGCACAGACGCAATGAGAAGTGGGCAAGCAAGAGGTG
GAACAAGGCTCACTCGGTCACGCACATGAAGGCCAATCCCTTGGGTGGTG
CTGCCATGGCCAAGGGCATCGTCCTAGAGAAGATTGGAATCGAAGCCAAA
CAGCCTAACTCGGCTATTCGCAAGTGTGTGAGAGTACAGCTGATTAAGAA
TGGAAAGAAGATTGCCGCTTTCGTGCCCCGGGACGGTTGCCTCAACTTTG
TGGACGAGAATGACGAAGTGCTGATCGCTGGTTTTGGTCGCTCTGGTCAC
GCCGTGGGCGACATTCCCGGTGTCCGCTTTAAAGTCATCAAGGTCTCTGG
TGTGGGGCTGCTTGCACTTTTCAAGGACAAAAAGGAGAAGCCTCGATCGT
GAATGGGGAAAGGTAAACCTGCGGGGTCCAATGCAGGGCGCAAGCTGCGA
GTGCACAGACGCAATGAGAAGTGGGCAAGCAAGAGGTGGAACAAGGCTCA
CTCGGTCACGCACATGAAGGCCAATCCCTTGGGTGGTGCTGCCATGGCCA
AGGGCATCGTCCTAGAGAAGATTGGAATCGAAGCCAAACAGCCTAACTCG
GCTATTCGCAAGTGTGTGAGAGTACAGCTGATTAAGAATGGAAAGAAGAT
TGCCGCTTTCGTGCCCCGGGACGGTTGCCTCAACTTTGTGGACGAGAATG
ACGAAGTGCTGATCGCTGGTTTTGGTCGCTCTGGTCACGCCGTGGGCGAC
ATTCCCGGTGTCCGCTTTAAAGTCATCAAGGTCTCTGGTGTGGGGCTGCT
TGCACTTTTCAAGGACAAAAAGGAGAAGCCTCGATCGTGA
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Synonyms
Publications