EWM20921.1, cds9754 (CDS) Nannochloropsis gaditana

Overview
NameEWM20921.1
Unique Namecds9754
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:105574..105584 +
Alignment locationKK037256.1:105726..105884 +
Alignment locationKK037256.1:106011..106137 +
Alignment locationKK037256.1:106259..106381 +
Alignment locationKK037256.1:106513..106530 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20921.1
Product40s ribosomal protein s23
Orig transcript idgnl|cribi|Naga_100061g9.8554.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:105574..105584 +
KK037256.1supercontigKK037256.1:105726..105884 +
KK037256.1supercontigKK037256.1:106011..106137 +
KK037256.1supercontigKK037256.1:106259..106381 +
KK037256.1supercontigKK037256.1:106513..106530 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0015935small ribosomal subunit
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005680Ribosomal_S23_euk/arc
IPR006032Ribosomal_S12/S23
Homology
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|585100877|gb|EWM20921.1| (40s ribosomal protein s23 [Nannochloropsis gaditana])

HSP 1 Score: 290.041 bits (741), Expect = 3.036e-99
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS
Sbjct:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145          
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|298709974|emb|CBJ31696.1| (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit [Ectocarpus siliculosus])

HSP 1 Score: 265.774 bits (678), Expect = 1.115e-88
Identity = 127/145 (87.59%), Postives = 138/145 (95.17%), Query Frame = 0
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            MGKGKPAG  AGRKLR+HRRNE+WASK +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:   62 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206          
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|325184307|emb|CCA18798.1| (Ribosomal protein S23 putative [Albugo laibachii Nc14])

HSP 1 Score: 251.136 bits (640), Expect = 9.862e-84
Identity = 120/145 (82.76%), Postives = 132/145 (91.03%), Query Frame = 0
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            MGK KPAG    RKLRVHRR ++WA K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKN KKIAAFVPRDGCLN++DENDEVLIAGFGR GHAVGDIPGVRFKV+KV+GV LLAL+K+KKEKPRS
Sbjct:    1 MGKHKPAGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNSKKIAAFVPRDGCLNYIDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 145          
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|1173950008|gb|OQR97993.1| (RS23, ribosomal protein 23 40S small ribosomal subunit [Thraustotheca clavata])

HSP 1 Score: 250.366 bits (638), Expect = 1.707e-83
Identity = 120/145 (82.76%), Postives = 131/145 (90.34%), Query Frame = 0
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            M K KPAG    RKLRVHRR ++W  K +NK+HS+T MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:    1 MAKHKPAGIRCARKLRVHRRTQRWHQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 145          
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|669170409|ref|XP_008620553.1| (40S ribosomal protein S23 [Saprolegnia diclina VS20] >gi|813115973|ref|XP_012195450.1| 40S ribosomal protein S23 [Saprolegnia parasitica CBS 223.65] >gi|530727743|gb|EQC25985.1| 40S ribosomal protein S23 [Saprolegnia diclina VS20] >gi|641540019|gb|KDO33814.1| 40S ribosomal protein S23 [Saprolegnia parasitica CBS 223.65] >gi|1173933094|gb|OQR84966.1| RS23, ribosomal protein 23 40S small ribosomal subunit [Achlya hypogyna])

HSP 1 Score: 250.366 bits (638), Expect = 1.990e-83
Identity = 120/145 (82.76%), Postives = 131/145 (90.34%), Query Frame = 0
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            M K KPAG    RKLRVHRR ++W  K +NK+HS+T MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:    1 MAKHKPAGIRCARKLRVHRRTQRWNQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 145          
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|224000856|ref|XP_002290100.1| (RS23, ribosomal protein 23 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220973522|gb|EED91852.1| RS23, ribosomal protein 23 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 249.21 bits (635), Expect = 5.573e-83
Identity = 118/142 (83.10%), Postives = 131/142 (92.25%), Query Frame = 0
Query:    4 GKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            GKPAG   GRKLR+HRRN++W   ++ KAHSVT MKANP+GG+ MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLN+VDENDEVL+AGFGRSGHAVGDIPGVRFK +KV+GV LLAL+K+KKEKPRS
Sbjct:    2 GKPAGIRTGRKLRIHRRNQRWHDLKYTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143          
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|698783095|ref|XP_009824591.1| (40S ribosomal protein S23 [Aphanomyces astaci] >gi|574120641|gb|ETV86119.1| 40S ribosomal protein S23 [Aphanomyces astaci])

HSP 1 Score: 248.44 bits (633), Expect = 9.143e-83
Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            M K KPAG    RKLRVHRR+++W  K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK VRVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKV+KVSGV LLAL+K+KKEKPRS
Sbjct:    1 MAKHKPAGIRCARKLRVHRRSQRWHQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145          
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|953497252|emb|CEG41561.1| (40s ribosomal protein s23 [Plasmopara halstedii])

HSP 1 Score: 247.284 bits (630), Expect = 3.410e-82
Identity = 119/145 (82.07%), Postives = 131/145 (90.34%), Query Frame = 0
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            MGK KP+G    RKLRVHRR ++WA K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KKIAAFVPRDGCLN+VDENDEVLI+GFGR GHAVGDIPGVRFKV+KVSGV LLAL+K+KKEKPRS
Sbjct:    1 MGKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNYVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145          
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|673019760|ref|XP_008863841.1| (40S ribosomal protein S23 [Aphanomyces invadans] >gi|574480755|gb|ETW07748.1| 40S ribosomal protein S23 [Aphanomyces invadans])

HSP 1 Score: 246.514 bits (628), Expect = 5.773e-82
Identity = 120/145 (82.76%), Postives = 131/145 (90.34%), Query Frame = 0
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            M K KPAG    RKLRVHRR+++W  K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK  RVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKV+KVSGV LLAL+K+KKEKPRS
Sbjct:    1 MAKHKPAGIRCARKLRVHRRSQRWHQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145          
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|675212637|ref|XP_008915203.1| (40S ribosomal protein S23 [Phytophthora parasitica INRA-310] >gi|695441675|ref|XP_009533268.1| hypothetical protein PHYSODRAFT_355273 [Phytophthora sojae] >gi|348670702|gb|EGZ10523.1| hypothetical protein PHYSODRAFT_355273 [Phytophthora sojae] >gi|566008035|gb|ETI30946.1| 40S ribosomal protein S23 [Phytophthora parasitica P1569] >gi|567945522|gb|ETK71333.1| 40S ribosomal protein S23 [Phytophthora parasitica] >gi|567974177|gb|ETL24778.1| 40S ribosomal protein S23 [Phytophthora parasitica] >gi|568003653|gb|ETL77999.1| 40S ribosomal protein S23 [Phytophthora parasitica] >gi|568033554|gb|ETM31257.1| 40S ribosomal protein S23 [Phytophthora parasitica] >gi|568084537|gb|ETM99465.1| 40S ribosomal protein S23 [Phytophthora parasitica INRA-310] >gi|570311708|gb|ETO59656.1| 40S ribosomal protein S23 [Phytophthora parasitica P1976] >gi|570935492|gb|ETP00749.1| 40S ribosomal protein S23 [Phytophthora parasitica CJ01A1] >gi|570965789|gb|ETP28908.1| 40S ribosomal protein S23 [Phytophthora parasitica P10297])

HSP 1 Score: 245.743 bits (626), Expect = 1.204e-81
Identity = 118/145 (81.38%), Postives = 130/145 (89.66%), Query Frame = 0
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
            M K KP+G    RKLRVHRR ++WA K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KKIAAFVPRDGCLN+VDENDEVLI+GFGR GHAVGDIPGVRFKV+KVSGV LLAL+K+KKEKPRS
Sbjct:    1 MAKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNYVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145          
The following BLAST results are available for this feature:
BLAST of EWM20921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100877|gb|EWM20921.1|3.036e-99100.0040s ribosomal protein s23 [Nannochloropsis gaditan... [more]
gi|298709974|emb|CBJ31696.1|1.115e-8887.59Ribosomal protein S23, component of cytosolic 80S ... [more]
gi|325184307|emb|CCA18798.1|9.862e-8482.76Ribosomal protein S23 putative [Albugo laibachii N... [more]
gi|1173950008|gb|OQR97993.1|1.707e-8382.76RS23, ribosomal protein 23 40S small ribosomal sub... [more]
gi|669170409|ref|XP_008620553.1|1.990e-8382.7640S ribosomal protein S23 [Saprolegnia diclina VS2... [more]
gi|224000856|ref|XP_002290100.1|5.573e-8383.10RS23, ribosomal protein 23 40S small ribosomal sub... [more]
gi|698783095|ref|XP_009824591.1|9.143e-8383.4540S ribosomal protein S23 [Aphanomyces astaci] >gi... [more]
gi|953497252|emb|CEG41561.1|3.410e-8282.0740s ribosomal protein s23 [Plasmopara halstedii][more]
gi|673019760|ref|XP_008863841.1|5.773e-8282.7640S ribosomal protein S23 [Aphanomyces invadans] >... [more]
gi|675212637|ref|XP_008915203.1|1.204e-8181.3840S ribosomal protein S23 [Phytophthora parasitica... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9785rna9785Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications