EWM20921.1, cds9754 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|585100877|gb|EWM20921.1| (40s ribosomal protein s23 [Nannochloropsis gaditana]) HSP 1 Score: 290.041 bits (741), Expect = 3.036e-99 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 Query: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS Sbjct: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|298709974|emb|CBJ31696.1| (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit [Ectocarpus siliculosus]) HSP 1 Score: 265.774 bits (678), Expect = 1.115e-88 Identity = 127/145 (87.59%), Postives = 138/145 (95.17%), Query Frame = 0 Query: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 MGKGKPAG AGRKLR+HRRNE+WASK +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS Sbjct: 62 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|325184307|emb|CCA18798.1| (Ribosomal protein S23 putative [Albugo laibachii Nc14]) HSP 1 Score: 251.136 bits (640), Expect = 9.862e-84 Identity = 120/145 (82.76%), Postives = 132/145 (91.03%), Query Frame = 0 Query: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 MGK KPAG RKLRVHRR ++WA K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKN KKIAAFVPRDGCLN++DENDEVLIAGFGR GHAVGDIPGVRFKV+KV+GV LLAL+K+KKEKPRS Sbjct: 1 MGKHKPAGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNSKKIAAFVPRDGCLNYIDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 145
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|1173950008|gb|OQR97993.1| (RS23, ribosomal protein 23 40S small ribosomal subunit [Thraustotheca clavata]) HSP 1 Score: 250.366 bits (638), Expect = 1.707e-83 Identity = 120/145 (82.76%), Postives = 131/145 (90.34%), Query Frame = 0 Query: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 M K KPAG RKLRVHRR ++W K +NK+HS+T MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS Sbjct: 1 MAKHKPAGIRCARKLRVHRRTQRWHQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 145
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|669170409|ref|XP_008620553.1| (40S ribosomal protein S23 [Saprolegnia diclina VS20] >gi|813115973|ref|XP_012195450.1| 40S ribosomal protein S23 [Saprolegnia parasitica CBS 223.65] >gi|530727743|gb|EQC25985.1| 40S ribosomal protein S23 [Saprolegnia diclina VS20] >gi|641540019|gb|KDO33814.1| 40S ribosomal protein S23 [Saprolegnia parasitica CBS 223.65] >gi|1173933094|gb|OQR84966.1| RS23, ribosomal protein 23 40S small ribosomal subunit [Achlya hypogyna]) HSP 1 Score: 250.366 bits (638), Expect = 1.990e-83 Identity = 120/145 (82.76%), Postives = 131/145 (90.34%), Query Frame = 0 Query: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 M K KPAG RKLRVHRR ++W K +NK+HS+T MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS Sbjct: 1 MAKHKPAGIRCARKLRVHRRTQRWNQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 145
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|224000856|ref|XP_002290100.1| (RS23, ribosomal protein 23 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220973522|gb|EED91852.1| RS23, ribosomal protein 23 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 249.21 bits (635), Expect = 5.573e-83 Identity = 118/142 (83.10%), Postives = 131/142 (92.25%), Query Frame = 0 Query: 4 GKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 GKPAG GRKLR+HRRN++W ++ KAHSVT MKANP+GG+ MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLN+VDENDEVL+AGFGRSGHAVGDIPGVRFK +KV+GV LLAL+K+KKEKPRS Sbjct: 2 GKPAGIRTGRKLRIHRRNQRWHDLKYTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|698783095|ref|XP_009824591.1| (40S ribosomal protein S23 [Aphanomyces astaci] >gi|574120641|gb|ETV86119.1| 40S ribosomal protein S23 [Aphanomyces astaci]) HSP 1 Score: 248.44 bits (633), Expect = 9.143e-83 Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0 Query: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 M K KPAG RKLRVHRR+++W K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK VRVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKV+KVSGV LLAL+K+KKEKPRS Sbjct: 1 MAKHKPAGIRCARKLRVHRRSQRWHQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|953497252|emb|CEG41561.1| (40s ribosomal protein s23 [Plasmopara halstedii]) HSP 1 Score: 247.284 bits (630), Expect = 3.410e-82 Identity = 119/145 (82.07%), Postives = 131/145 (90.34%), Query Frame = 0 Query: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 MGK KP+G RKLRVHRR ++WA K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK RVQLIKN KKIAAFVPRDGCLN+VDENDEVLI+GFGR GHAVGDIPGVRFKV+KVSGV LLAL+K+KKEKPRS Sbjct: 1 MGKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNYVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|673019760|ref|XP_008863841.1| (40S ribosomal protein S23 [Aphanomyces invadans] >gi|574480755|gb|ETW07748.1| 40S ribosomal protein S23 [Aphanomyces invadans]) HSP 1 Score: 246.514 bits (628), Expect = 5.773e-82 Identity = 120/145 (82.76%), Postives = 131/145 (90.34%), Query Frame = 0 Query: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 M K KPAG RKLRVHRR+++W K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK RVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKV+KVSGV LLAL+K+KKEKPRS Sbjct: 1 MAKHKPAGIRCARKLRVHRRSQRWHQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
BLAST of EWM20921.1 vs. NCBI_GenBank
Match: gi|675212637|ref|XP_008915203.1| (40S ribosomal protein S23 [Phytophthora parasitica INRA-310] >gi|695441675|ref|XP_009533268.1| hypothetical protein PHYSODRAFT_355273 [Phytophthora sojae] >gi|348670702|gb|EGZ10523.1| hypothetical protein PHYSODRAFT_355273 [Phytophthora sojae] >gi|566008035|gb|ETI30946.1| 40S ribosomal protein S23 [Phytophthora parasitica P1569] >gi|567945522|gb|ETK71333.1| 40S ribosomal protein S23 [Phytophthora parasitica] >gi|567974177|gb|ETL24778.1| 40S ribosomal protein S23 [Phytophthora parasitica] >gi|568003653|gb|ETL77999.1| 40S ribosomal protein S23 [Phytophthora parasitica] >gi|568033554|gb|ETM31257.1| 40S ribosomal protein S23 [Phytophthora parasitica] >gi|568084537|gb|ETM99465.1| 40S ribosomal protein S23 [Phytophthora parasitica INRA-310] >gi|570311708|gb|ETO59656.1| 40S ribosomal protein S23 [Phytophthora parasitica P1976] >gi|570935492|gb|ETP00749.1| 40S ribosomal protein S23 [Phytophthora parasitica CJ01A1] >gi|570965789|gb|ETP28908.1| 40S ribosomal protein S23 [Phytophthora parasitica P10297]) HSP 1 Score: 245.743 bits (626), Expect = 1.204e-81 Identity = 118/145 (81.38%), Postives = 130/145 (89.66%), Query Frame = 0 Query: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145 M K KP+G RKLRVHRR ++WA K +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK RVQLIKN KKIAAFVPRDGCLN+VDENDEVLI+GFGR GHAVGDIPGVRFKV+KVSGV LLAL+K+KKEKPRS Sbjct: 1 MAKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNYVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145 The following BLAST results are available for this feature:
BLAST of EWM20921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|