rna978, rna978 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna978
Unique Name	rna978
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2024
Alignment location	CM002456.1:884696..886443 +

Link to JBrowse

Properties


Property Name	Value
Product	rna binding protein
Orig transcript id	gnl\|cribi\|Naga_100114g14.2484.mrna
Orig protein id	gnl\|cribi\|Naga_100114g14.2484
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:884696..886443 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100114g14	gene941	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna978	rna978-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29699.1	cds977	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:884696..886443+
coding sequence from alignment at CM002456.1:884696..886443+

mRNA sequence

>rna978 ID=rna978|Name=rna978|organism=Nannochloropsis gaditana|type=mRNA|length=2024bp
GCGCCTATCGAATGTAAGCACGTGCGCGGCAATTATCGCACAAGGCGAAC
ATTGCGAGCTGTGGGAGGAGATGGTCCCGGACGTGTCGCGGTTCTTCGAG
TGGAGCATTGCGCATCGCCTGAACCGGGTCGAGTGGATCTTGCTGGGTAA
CCGCCGATGGGGAAGTCTGGTTGACTCCCCACTGCGGCAGGCTCGGCTTC
GTTTGCTGGCTGCATTAGGCCAGGGGCTGGGCCTGATGGTGGGCGTGGAT
GACCCGATCGCCTTCCAGCAGCAGCACTCCTGGGTGATGACGACCACGCT
GGCCCCGGAGGTCTGGCAGGTGGCGGCCGTGAAGGAGCGAGTGGATTGGC
TGATAGGCGGCGCGGGCTTCGATTTTTTATCCACCGAAGCCGGATTTTCA
GAGTTTTCTGCCCCCGACGACAAGCTAATGCTACGGCTTCTGGACGCATT
TGCCGGGCGAGTCAACGGGACGTGGGGGAAAGAAGCGACTGTCAAGGTCC
ACTGCTCCTCAAACCAATTTTGCAAAAATTTTAAAGACCCTAGGTCGGAC
ACGCCCTTAAACTTCAATTTTTTGCCCACATATGCGGGGCCAGAACTAGG
TGTGCTGCCACACACCGTGCAAGCGTACGCTTTAGACGACCCAAGCGCCG
GTGTATATGGAAACAGGAACTTCACATTCATGGCTGACTACATGCGATGG
GAAGCGGGAAAAGGTGGGGCCCGCGGGGAAAAGGAAGGATTTCGAAGACA
AATCCATTTTTACCCAGAAACGGCGTATTTCATCAATGTAGATATCGATG
TACCGCTTTTCTTGCCTGTATACGCAGAGCGTCGTCTGCATGATCTGTTG
CTCTTGGCTGAAGCCGAAGATGAGGAGGGTTTCCGACTAGCAGGAGCCTG
GAATTTTGACTCGGGCTGGGAATGGGGCTATTGGCTAAACAGTGCTATCA
TGGCCGCGGCCATGTGGGATCCCACTCAATTCTTATCGGGGGGCACAGAC
TCGTCTCGCGCATTCGAGGAGGCGGTAGAGAGAAGTCTGAGACAGCTCGC
TCCGTCATATAGAAGCCGTGTTGCTGAATGGGTGTCCGATATGGCGCATT
TTCAATATCACACACTTCTCTTGGGCGAGCTTGGCGATGACATCGATGCG
GCCTCCTCTTGTCCCGACCAAGTCAAGCTTTCGGGCATCGCCTATCTGTG
CGGGAAAGACACTTGGGTTGAACTCCCCCGGAGACTAGGTTTGACTTTCA
CACAGCCAAATTACGTAGCTTTCGAGGAACACGCTGATCCGTACTATCCG
CATGTACAGCCACTGCTAGCTTACATGCAGCGAGGCACAGAGAGGTTGTA
TCTGGATGGTGCAAGGTTGGTTCGCGTCGTGGAAGGTGAAAATAATGTAT
CGCCCGCGCTCATGGAGCACCTGAAAGAAATGCGAGATGGAGCTCACATG
CTTGCGCTGCGTGCTCAACAAGTGGCACTCCTGTATCAAGCTACTTCGCC
AAACTGCACAGAAAAAGGTTCGGATGTACTCCGAGATCGCTTGAAGCTTT
TGTCTGAGAGCCGGATCCTCCTGAAAAAGGCAACAGCCGTAGTACAGTCG
CGAGAAAGTCGGTACCAAGCGCCGCTAGGGCGGATAGCAGGCTGGCGGGA
AAACCCAACGGTATACCACTGGGACTATTTATGGAGTGTGAAGAGCCTGT
ATTTTTGGTGGCGGGATCAAGGACGCGCTGAGGCCGTTAGTTTCAAGTCT
CGCTGGTCTTTCTGCTATCTAAATCGGATGGACCCGACAGAGGTGGCTTT
GGGCGTGGGAAAGAATTTCCTTCGAATTATCAGTACCAACTTGCCGCGAA
TATTCCCATGGAGTGGCTCCATCACAGACTGCTTAGCACCCCCTTCTAAG
GAGTATGTATTTCCAAGAGACTTGTAAGGAGTGATTATTCGAAGTTGAGA
ATAAAAGCTGGCCATCACTAAAGTACCCCCTAAAAGATCACAAATTGAAA
ATAATCATTAGGATTCCGCCATCC

protein sequence of rna978

>rna978-protein ID=rna978-protein|Name=rna978|organism=Nannochloropsis gaditana|type=polypeptide|length=497bp
MPCRSYKPGDILSFLRTDVEQPSSPSASAQGGSIVKGSKKRKHQAGAPSK
STQSSSSIFSEATQAKFVPVQPLPGLNMDLNNIKRRRKTKKGKERPIRPS
KKEKAAAYRAGEGEMVGSTAPSVESTYSAPDNETTKPMKTLSTNFALSQN
EEAGRGEDVTSLPPLVREHVPRDAHWKQGTENKKSRRDDTGGINFEAEVD
IDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAK
IDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLV
EAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGD
VEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTC
GKRVKVRSNDSATRVKSKAVGAKRRLEAAATKRNLNAPQFPPGARPEIIK
ASFEGRRASDTFGRLSVKKRGSGPAKKSKGASKGNRARKGGQKKTNK

mRNA from alignment at CM002456.1:884696..886443+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna978 ID=rna978|Name=rna978|organism=Nannochloropsis gaditana|type=mRNA|length=1748bp|location=Sequence derived from alignment at CM002456.1:884696..886443+ (Nannochloropsis gaditana)
ACCGCGGCATGGCACGGTCGATATCCGGACAATCCACCTGaatccaacct
ccccccctcctgttACCCCAGGACAATGCCCTGTCGCTCCTACAAGCCGG
GAGAcatcctgtccttcctccgaACGGATGTAGAACagccatcttctccc
tctgcttCTGCGCAAGGAGGATCTATTGTGAAAGGTAGCAAAAAGCGCAA
GCATCAGGCTGGCGCTCCGAGCAAGTCGACTCAATCAAGCTCCTCTATCT
TTTCGGAAGCCACTCAAGCCAAATTTGTGCCGGTTCAGCCGCTTCCTGGT
CTGAATATGGATTTGAATAATATTAAACGTCGACGAAAAACCaaaaaggg
caaggagcGCCCGATACGGCCTAgtaagaaggaaaaggcagcTGCTTAtc
gggcaggagaaggtgaaATGGTTGGGAGCACTGCTCCAAGCGTCGAGAGC
ACATACTCAGCACCTGATAACGAAACGACAAAGCCAATGAAAACGTTATC
AACAAATTTTGCTCTGTCTCAGAATGAGGAAGCAGGCCGTGGGGAAGATG
TTACGTCGTTACCTCCTCTGGTGAGGGAGCACGTCCCTCGTGATGCGCAC
TGGAAACAAGGAACGGAAAACAAGAAGTCCAGACGAGACGATACGGGCGG
CATTAATTTTGAAGCAGAGGTTGATATAGATAAGGAGAAGGCTAAGGAAC
GCCGCACCATCTTTGTTGGGAACCTCCCGACCAGTATCTCCAAAAAACGA
GTGCAGAATATTTTCAAGGAGTACGGGGAAATAGGTAGGTAGCATCAATT
TATTGCTCTATGTCGGATACGCTTGTCATTGTTTATTCTTGTCCAGTCTT
TGATGTCGAGATGTATCTGCATCCTTATCCGCTGAATCACGtgcttttcc
cttttcctatAGAGTCGGTGAGGTTCCGCTCCATGGCCCTAGCGGGTGCC
AAGATCGACGATCACGGGAACCAGCGTCTGGCAAAGAAAGTATCGGCAAA
CAAGCGCCTCTTGAGTGATGCTAAAGATACGTTCAATGCTTACGTAGTTT
TTCTCCGAGAGGACTCGGCTGAGGCCGCAATAGCCGCCAACAATCGGCTT
GTGGAAGCAAAGCATCTGCGAGTGGATCGCGTTGGTAGTGAGACGATTCG
AGACCCGAAGCGAAGCGTTTTTCTGGGCAACCTGCCATTTGATGCGAAAG
AGGATACGATTCGGGCCCATGTGGCGCAGGAGTTAGAGGGCGGGCcaggg
gacgtggagggagtcCGGCTGGTCAGAGACCCTGAGACGCAGCAAGGCAA
AGGCTTTGGCTTCGTACTCCTTAAAGACAAGGCATCAGTCGCAGCGGCTC
TGCGTTTAAATGGGACTTCGTTTCAGGGGCGTAAAATTCGCGTTACGACA
TGCGGTAAGCGGGTTAAAGTTCGCAGCAACGATAGTGCGACACGCGTGAA
AAGCAAAGCAGTAGGGGCAAAGCGACGTTTAGAGGCCGCAGCCACCAAAA
GGAATTTGAATGCTCCACAGTTCCCACCCGGTGCACGACCAGAAATCATA
AAAGCATCCTTTGAGGGGAGACGGGCGTCTGACACCTTCGGAAGGCTGAG
cgtgaagaaaaggggaTCGGGCCCTGCAAAGAAATCAAAAGGTGCCTCGA
AAGGAAACAGGGCTAGAAAAGGTGGTCAAAAGAAAACGAACAAATAAAAG
AAAAGCCTTGCAGATAGAAAGCGATGAAAACTACTGAAATTACTGACC

Coding sequence (CDS) from alignment at CM002456.1:884696..886443+

>rna978 ID=rna978|Name=rna978|organism=Nannochloropsis gaditana|type=CDS|length=2988bp|location=Sequence derived from alignment at CM002456.1:884696..886443+ (Nannochloropsis gaditana)
ATGCCCTGTCGCTCCTACAAGCCGGGAGAcatcctgtccttcctccgaAC
GGATGTAGAACagccatcttctccctctgcttCTGCGCAAGGAGGATCTA
TTGTGAAAGGTAGCAAAAAGCGCAAGCATCAGGCTGGCGCTCCGAGCAAG
TCGACTCAATCAAGCTCCTCTATCTTTTCGGAAGCCACTCAAGCCAAATT
TGTGCCGGTTCAGCCGCTTCCTGGTCTGAATATGGATTTGAATAATATTA
AACGTCGACGAAAAACCaaaaagggcaaggagcGCCCGATACGGCCTAgt
aagaaggaaaaggcagcTGCTTAtcgggcaggagaaggtgaaATGGTTGG
GAGCACTGCTCCAAGCGTCGAGAGCACATACTCAGCACCTGATAACGAAA
CGACAAAGCCAATGAAAACGTTATCAACAAATTTTGCTCTGTCTCAGAAT
GAGGAAGCAGGCCGTGGGGAAGATGTTACGTCGTTACCTCCTCTGGTGAG
GGAGCACGTCCCTCGTGATGCGCACTGGAAACAAGGAACGGAAAACAAGA
AGTCCAGACGAGACGATACGGGCGGCATTAATTTTGAAGCAGAGGTTGAT
ATAGATAAGGAGAAGGCTAAGGAACGCCGCACCATCTTTGTTGGGAACCT
CCCGACCAGTATCTCCAAAAAACGAGTGCAGAATATTTTCAAGGAGTACG
GGGAAATAGAGTCGGTGAGGTTCCGCTCCATGGCCCTAGCGGGTGCCAAG
ATCGACGATCACGGGAACCAGCGTCTGGCAAAGAAAGTATCGGCAAACAA
GCGCCTCTTGAGTGATGCTAAAGATACGTTCAATGCTTACGTAGTTTTTC
TCCGAGAGGACTCGGCTGAGGCCGCAATAGCCGCCAACAATCGGCTTGTG
GAAGCAAAGCATCTGCGAGTGGATCGCGTTGGTAGTGAGACGATTCGAGA
CCCGAAGCGAAGCGTTTTTCTGGGCAACCTGCCATTTGATGCGAAAGAGG
ATACGATTCGGGCCCATGTGGCGCAGGAGTTAGAGGGCGGGCcaggggac
gtggagggagtcCGGCTGGTCAGAGACCCTGAGACGCAGCAAGGCAAAGG
CTTTGGCTTCGTACTCCTTAAAGACAAGGCATCAGTCGCAGCGGCTCTGC
GTTTAAATGGGACTTCGTTTCAGGGGCGTAAAATTCGCGTTACGACATGC
GGTAAGCGGGTTAAAGTTCGCAGCAACGATAGTGCGACACGCGTGAAAAG
CAAAGCAGTAGGGGCAAAGCGACGTTTAGAGGCCGCAGCCACCAAAAGGA
ATTTGAATGCTCCACAGTTCCCACCCGGTGCACGACCAGAAATCATAAAA
GCATCCTTTGAGGGGAGACGGGCGTCTGACACCTTCGGAAGGCTGAGcgt
gaagaaaaggggaTCGGGCCCTGCAAAGAAATCAAAAGGTGCCTCGAAAG
GAAACAGGGCTAGAAAAGGTGGTCAAAAGAAAACGAACAAATAAATGCCC
TGTCGCTCCTACAAGCCGGGAGAcatcctgtccttcctccgaACGGATGT
AGAACagccatcttctccctctgcttCTGCGCAAGGAGGATCTATTGTGA
AAGGTAGCAAAAAGCGCAAGCATCAGGCTGGCGCTCCGAGCAAGTCGACT
CAATCAAGCTCCTCTATCTTTTCGGAAGCCACTCAAGCCAAATTTGTGCC
GGTTCAGCCGCTTCCTGGTCTGAATATGGATTTGAATAATATTAAACGTC
GACGAAAAACCaaaaagggcaaggagcGCCCGATACGGCCTAgtaagaag
gaaaaggcagcTGCTTAtcgggcaggagaaggtgaaATGGTTGGGAGCAC
TGCTCCAAGCGTCGAGAGCACATACTCAGCACCTGATAACGAAACGACAA
AGCCAATGAAAACGTTATCAACAAATTTTGCTCTGTCTCAGAATGAGGAA
GCAGGCCGTGGGGAAGATGTTACGTCGTTACCTCCTCTGGTGAGGGAGCA
CGTCCCTCGTGATGCGCACTGGAAACAAGGAACGGAAAACAAGAAGTCCA
GACGAGACGATACGGGCGGCATTAATTTTGAAGCAGAGGTTGATATAGAT
AAGGAGAAGGCTAAGGAACGCCGCACCATCTTTGTTGGGAACCTCCCGAC
CAGTATCTCCAAAAAACGAGTGCAGAATATTTTCAAGGAGTACGGGGAAA
TAGAGTCGGTGAGGTTCCGCTCCATGGCCCTAGCGGGTGCCAAGATCGAC
GATCACGGGAACCAGCGTCTGGCAAAGAAAGTATCGGCAAACAAGCGCCT
CTTGAGTGATGCTAAAGATACGTTCAATGCTTACGTAGTTTTTCTCCGAG
AGGACTCGGCTGAGGCCGCAATAGCCGCCAACAATCGGCTTGTGGAAGCA
AAGCATCTGCGAGTGGATCGCGTTGGTAGTGAGACGATTCGAGACCCGAA
GCGAAGCGTTTTTCTGGGCAACCTGCCATTTGATGCGAAAGAGGATACGA
TTCGGGCCCATGTGGCGCAGGAGTTAGAGGGCGGGCcaggggacgtggag
ggagtcCGGCTGGTCAGAGACCCTGAGACGCAGCAAGGCAAAGGCTTTGG
CTTCGTACTCCTTAAAGACAAGGCATCAGTCGCAGCGGCTCTGCGTTTAA
ATGGGACTTCGTTTCAGGGGCGTAAAATTCGCGTTACGACATGCGGTAAG
CGGGTTAAAGTTCGCAGCAACGATAGTGCGACACGCGTGAAAAGCAAAGC
AGTAGGGGCAAAGCGACGTTTAGAGGCCGCAGCCACCAAAAGGAATTTGA
ATGCTCCACAGTTCCCACCCGGTGCACGACCAGAAATCATAAAAGCATCC
TTTGAGGGGAGACGGGCGTCTGACACCTTCGGAAGGCTGAGcgtgaagaa
aaggggaTCGGGCCCTGCAAAGAAATCAAAAGGTGCCTCGAAAGGAAACA
GGGCTAGAAAAGGTGGTCAAAAGAAAACGAACAAATAA

Synonyms

Publications