EWM29699.1, cds977 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|585112275|gb|EWM29699.1| (rna binding protein [Nannochloropsis gaditana]) HSP 1 Score: 1005.74 bits (2599), Expect = 0.000e+0 Identity = 497/497 (100.00%), Postives = 497/497 (100.00%), Query Frame = 0
Query: 1 MPCRSYKPGDILSFLRTDVEQPSSPSASAQGGSIVKGSKKRKHQAGAPSKSTQSSSSIFSEATQAKFVPVQPLPGLNMDLNNIKRRRKTKKGKERPIRPSKKEKAAAYRAGEGEMVGSTAPSVESTYSAPDNETTKPMKTLSTNFALSQNEEAGRGEDVTSLPPLVREHVPRDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAKRRLEAAATKRNLNAPQFPPGARPEIIKASFEGRRASDTFGRLSVKKRGSGPAKKSKGASKGNRARKGGQKKTNK 497
MPCRSYKPGDILSFLRTDVEQPSSPSASAQGGSIVKGSKKRKHQAGAPSKSTQSSSSIFSEATQAKFVPVQPLPGLNMDLNNIKRRRKTKKGKERPIRPSKKEKAAAYRAGEGEMVGSTAPSVESTYSAPDNETTKPMKTLSTNFALSQNEEAGRGEDVTSLPPLVREHVPRDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAKRRLEAAATKRNLNAPQFPPGARPEIIKASFEGRRASDTFGRLSVKKRGSGPAKKSKGASKGNRARKGGQKKTNK
Sbjct: 1 MPCRSYKPGDILSFLRTDVEQPSSPSASAQGGSIVKGSKKRKHQAGAPSKSTQSSSSIFSEATQAKFVPVQPLPGLNMDLNNIKRRRKTKKGKERPIRPSKKEKAAAYRAGEGEMVGSTAPSVESTYSAPDNETTKPMKTLSTNFALSQNEEAGRGEDVTSLPPLVREHVPRDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAKRRLEAAATKRNLNAPQFPPGARPEIIKASFEGRRASDTFGRLSVKKRGSGPAKKSKGASKGNRARKGGQKKTNK 497
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|813132369|ref|XP_012197753.1| (hypothetical protein SPRG_19497 [Saprolegnia parasitica CBS 223.65] >gi|641537693|gb|KDO31537.1| hypothetical protein SPRG_19497 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 190.66 bits (483), Expect = 1.646e-51 Identity = 105/230 (45.65%), Postives = 138/230 (60.00%), Query Frame = 0
Query: 196 EAEVDI------DKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEG-----GPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATR 414
EA+V++ D EKA RTIFVGN+ + + ++ F G++ES R RS+ +AG +D HG Q L KKV ANK+L + +D NAYVVF EDS AA+A N K +RVDR T DPKR+VF+GN+ F A ED IR H LE G VE VR++RD +T GKGFG+VLLKD + A AL+L+G+ R++RV+ CGKR K + D R
Sbjct: 104 EAKVEVAPKEEEDDEKAP--RTIFVGNVSLEATAEELKKFFSSCGKVESARLRSVPVAGCAVDQHGKQNLVKKVCANKKLFVEGRDNCNAYVVFASEDSIAAALALNGADFHEKKIRVDRKVLTT--DPKRTVFVGNMAFTATEDEIRNHFESNLEKDDEDEGSALVESVRIIRDKDTHLGKGFGYVLLKDVTTAAKALKLDGSKIGKRELRVSVCGKRFKTTATDKTAR 329
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|669147326|ref|XP_008609225.1| (hypothetical protein SDRG_05290 [Saprolegnia diclina VS20] >gi|530738821|gb|EQC37063.1| hypothetical protein SDRG_05290 [Saprolegnia diclina VS20]) HSP 1 Score: 190.274 bits (482), Expect = 1.992e-51 Identity = 103/218 (47.25%), Postives = 132/218 (60.55%), Query Frame = 0
Query: 202 DKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEG-----GPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATR 414
D EKA RTIFVGN+ + + ++ F G++ES R RS+ +AG ID HG Q L KKV ANK+L + +D NAYVVF EDS AA+A N K +RVDR T DPKR+VF+GN+ F A ED IR H LE G VE VR++RD +T GKGFG+VLLKD + A AL+L+G+ R++RV+ CGKR K + D R
Sbjct: 117 DDEKAP--RTIFVGNVSLEATAEELKKFFSSCGKVESARLRSVPVAGCAIDQHGKQNLVKKVCANKKLFVEGRDNCNAYVVFASEDSIAAALALNGAEFHEKKIRVDRKVLTT--DPKRTVFVGNMAFAATEDEIRNHFESNLEKDDEDEGSALVESVRIIRDKDTHLGKGFGYVLLKDVTTAAKALKLDGSKIGKRELRVSVCGKRFKTTATDKTAR 330
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|299470988|emb|CBN78849.2| (white-brown-complex ABC transporter family (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 191.045 bits (484), Expect = 2.410e-49 Identity = 122/259 (47.10%), Postives = 152/259 (58.69%), Query Frame = 0
Query: 204 EKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSD-AKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAKRRLEAAATKRNLNAPQFPPGARPEIIKASFEGRRASDT 461
++ KE RT+FVGNLPTS + K+V+ FKEYG +ESVR RS+A+ G +D G+Q+L +KV N+ ++ + K + NAYVV+ S E A+AAN V KH+RVDR S D RSVFLGNLP DA E+ +R A +LEGGP VEGVRLVRD T GKGFG+VLL D+A AAAL L GT +GR +RV CGKR K R K L +F ASFEGRR +D
Sbjct: 324 DEEKESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVQGMAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDCASVEKALAANGTDVGGKHVRVDRAKSGEY-DHTRSVFLGNLPMDAGEEEVRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALQGTKLKGRPLRVMPCGKRTKGR--------------------GGVAKPGLEDHKF----------ASFEGRRTTDV 551
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|1173947808|gb|OQR95989.1| (RNA-binding protein [Achlya hypogyna]) HSP 1 Score: 182.185 bits (461), Expect = 3.004e-48 Identity = 97/210 (46.19%), Postives = 127/210 (60.48%), Query Frame = 0
Query: 210 RTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEG-----GPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATR 414
RTIFVGN+ + + ++ F G++ES R RS+ +AG +D HG Q L KKV ANK+L + +D NAYVVF E+S E A+A N K LRVDR TI D KR+VF+GN+ F A ED +R H +E G VE VRL+RD +T GKGFG+VLLKD + AL+LNG+ R++RV+ CGKR K + D R
Sbjct: 126 RTIFVGNVSLEATAEELKKFFSSCGKVESARLRSLPVAGCAVDQHGKQNLVKKVCANKKLFVEGRDNCNAYVVFASEESIEKALALNGAEFHEKKLRVDR-KVPTI-DAKRTVFVGNVAFTATEDDLRRHFEANIEKDDEDEGSALVESVRLIRDKDTHLGKGFGYVLLKDVPTATKALKLNGSKIGKRELRVSVCGKRFKSTAADKTPR 333
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|301111538|ref|XP_002904848.1| (RNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262095178|gb|EEY53230.1| RNA-binding protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 175.637 bits (444), Expect = 1.468e-46 Identity = 96/234 (41.03%), Postives = 140/234 (59.83%), Query Frame = 0
Query: 200 DIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGG--PGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAV----GAKRRLE 427
++ ++ KERRT+FVGN+ ++K ++ F G++ESVR R + +AG + D GNQ+L KV ANK++L+ AKD NAYV F+ E SAEAAI N + +RVDR E + D +RSVF+GN+PF ++ I + L+ P +E VRL+RD E+ GKGFG++LLK A VA L L + R++RV CGKR K + T+ K + + GA+ R+
Sbjct: 64 ELTPDELKERRTVFVGNVSLDATQKDIKKHFSVCGQVESVRLRHLPIAGCAVGDAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSAEAAIKLNGTTLVQMKIRVDR--CEPVIDARRSVFIGNVPFKCTDEQIFQFFLKRLKSDDEPEPIENVRLIRDRESGLGKGFGYLLLKTPALVAKTLTLRNLKMETRELRVQVCGKRFKNLRGEETTKEKFEGLRASAGARARIH 295
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|602644063|ref|XP_007428486.1| (PREDICTED: RNA-binding protein 34 isoform X2 [Python bivittatus]) HSP 1 Score: 174.866 bits (442), Expect = 1.917e-46 Identity = 99/253 (39.13%), Postives = 146/253 (57.71%), Query Frame = 0
Query: 172 RDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAAN-NRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAK 423
++ H+ T++ S +D + +V++ KEK K +RT+FVGNLP + + + ++ FKEYG+IES+RFRS+ A I +KK++A KR + NAY+VF E +A A+ N + H+RVD + D KRS+F+GNLP++ +DT+R H + G+V G+RLVRD T GKGFG+VL + +V AL+LN + QGRK+RV C KR K +S KS +VG K
Sbjct: 71 KNRHFHLATKHLSSSEEDAQIEKKKIQVNLAKEKLKNKRTVFVGNLPVTYTAQMLKAFFKEYGQIESIRFRSLIPAENAI--------SKKMAAIKRKIHPNMKYINAYIVFKEESAANDALKCNGTEITSGFHIRVDLASKSSCHDNKRSIFVGNLPYEIDDDTVRNHFLE-----CGNVTGIRLVRDRNTGIGKGFGYVLFETTDAVHLALKLNQSELQGRKLRVQRCVKREKAEQKNSNKNTKS-SVGLK 309
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|1004673449|ref|XP_007428485.2| (PREDICTED: RNA-binding protein 34 isoform X1 [Python bivittatus]) HSP 1 Score: 174.481 bits (441), Expect = 8.548e-46 Identity = 99/253 (39.13%), Postives = 146/253 (57.71%), Query Frame = 0
Query: 172 RDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAAN-NRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAK 423
++ H+ T++ S +D + +V++ KEK K +RT+FVGNLP + + + ++ FKEYG+IES+RFRS+ A I +KK++A KR + NAY+VF E +A A+ N + H+RVD + D KRS+F+GNLP++ +DT+R H + G+V G+RLVRD T GKGFG+VL + +V AL+LN + QGRK+RV C KR K +S KS +VG K
Sbjct: 134 KNRHFHLATKHLSSSEEDAQIEKKKIQVNLAKEKLKNKRTVFVGNLPVTYTAQMLKAFFKEYGQIESIRFRSLIPAENAI--------SKKMAAIKRKIHPNMKYINAYIVFKEESAANDALKCNGTEITSGFHIRVDLASKSSCHDNKRSIFVGNLPYEIDDDTVRNHFLE-----CGNVTGIRLVRDRNTGIGKGFGYVLFETTDAVHLALKLNQSELQGRKLRVQRCVKREKAEQKNSNKNTKS-SVGLK 372
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|970653510|gb|KUF91973.1| (Nucleolar protein 12 [Phytophthora nicotianae]) HSP 1 Score: 175.252 bits (443), Expect = 1.427e-45 Identity = 91/201 (45.27%), Postives = 125/201 (62.19%), Query Frame = 0
Query: 207 KERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGG--PGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVK 405
K RRT+FVGN+ S+K ++N F G++ESVR R + +AG + GNQ+L KV ANK++L+ AKD NAYV F+ E S EAA+ N + K +RVDR SE + D +RSVF+GN+PF ++ + ++ L P VE VRL+RD E+ GKGFG++LLK A VA L L + R++RV CGKR K
Sbjct: 155 KARRTVFVGNVSLDASQKDIKNHFSVCGKVESVRLRHLPIAGCAVGQAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSVEAALKLNGTTLVQKKIRVDR--SEPVIDARRSVFIGNVPFKCTDEQMLQFFSKRLRSDEEPEPVENVRLIRDRESGLGKGFGYILLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK 353
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|675178409|ref|XP_008898089.1| (hypothetical protein PPTG_06080 [Phytophthora parasitica INRA-310] >gi|567946952|gb|ETK72752.1| hypothetical protein L915_20215 [Phytophthora parasitica] >gi|567975663|gb|ETL26206.1| hypothetical protein L916_20082 [Phytophthora parasitica] >gi|568102335|gb|ETN17017.1| hypothetical protein PPTG_06080 [Phytophthora parasitica INRA-310] >gi|570936982|gb|ETP02239.1| hypothetical protein F441_20664 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 175.252 bits (443), Expect = 1.517e-45 Identity = 91/201 (45.27%), Postives = 125/201 (62.19%), Query Frame = 0
Query: 207 KERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGG--PGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVK 405
K RRT+FVGN+ S+K ++N F G++ESVR R + +AG + GNQ+L KV ANK++L+ AKD NAYV F+ E S EAA+ N + K +RVDR SE + D +RSVF+GN+PF ++ + ++ L P VE VRL+RD E+ GKGFG++LLK A VA L L + R++RV CGKR K
Sbjct: 155 KARRTVFVGNVSLDASQKDIKNHFSVCGKVESVRLRHLPIAGCAVGQAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSVEAALKLNGTTLVQKKIRVDR--SEPVIDARRSVFIGNVPFKCTDEQMLQFFSKRLRSDEEPEPVENVRLIRDRESGLGKGFGYILLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK 353 The following BLAST results are available for this feature:
BLAST of EWM29699.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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