EWM29699.1, cds977 (CDS) Nannochloropsis gaditana

Overview
NameEWM29699.1
Unique Namecds977
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:884771..885479 +
Alignment locationCM002456.1:885608..886392 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29699.1
Productrna binding protein
Orig transcript idgnl|cribi|Naga_100114g14.2484.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:884771..885479 +
CM002456.1supercontigCM002456.1:885608..886392 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|585112275|gb|EWM29699.1| (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1005.74 bits (2599), Expect = 0.000e+0
Identity = 497/497 (100.00%), Postives = 497/497 (100.00%), Query Frame = 0
Query:    1 MPCRSYKPGDILSFLRTDVEQPSSPSASAQGGSIVKGSKKRKHQAGAPSKSTQSSSSIFSEATQAKFVPVQPLPGLNMDLNNIKRRRKTKKGKERPIRPSKKEKAAAYRAGEGEMVGSTAPSVESTYSAPDNETTKPMKTLSTNFALSQNEEAGRGEDVTSLPPLVREHVPRDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAKRRLEAAATKRNLNAPQFPPGARPEIIKASFEGRRASDTFGRLSVKKRGSGPAKKSKGASKGNRARKGGQKKTNK 497
            MPCRSYKPGDILSFLRTDVEQPSSPSASAQGGSIVKGSKKRKHQAGAPSKSTQSSSSIFSEATQAKFVPVQPLPGLNMDLNNIKRRRKTKKGKERPIRPSKKEKAAAYRAGEGEMVGSTAPSVESTYSAPDNETTKPMKTLSTNFALSQNEEAGRGEDVTSLPPLVREHVPRDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAKRRLEAAATKRNLNAPQFPPGARPEIIKASFEGRRASDTFGRLSVKKRGSGPAKKSKGASKGNRARKGGQKKTNK
Sbjct:    1 MPCRSYKPGDILSFLRTDVEQPSSPSASAQGGSIVKGSKKRKHQAGAPSKSTQSSSSIFSEATQAKFVPVQPLPGLNMDLNNIKRRRKTKKGKERPIRPSKKEKAAAYRAGEGEMVGSTAPSVESTYSAPDNETTKPMKTLSTNFALSQNEEAGRGEDVTSLPPLVREHVPRDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAKRRLEAAATKRNLNAPQFPPGARPEIIKASFEGRRASDTFGRLSVKKRGSGPAKKSKGASKGNRARKGGQKKTNK 497          
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|813132369|ref|XP_012197753.1| (hypothetical protein SPRG_19497 [Saprolegnia parasitica CBS 223.65] >gi|641537693|gb|KDO31537.1| hypothetical protein SPRG_19497 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 190.66 bits (483), Expect = 1.646e-51
Identity = 105/230 (45.65%), Postives = 138/230 (60.00%), Query Frame = 0
Query:  196 EAEVDI------DKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEG-----GPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATR 414
            EA+V++      D EKA   RTIFVGN+    + + ++  F   G++ES R RS+ +AG  +D HG Q L KKV ANK+L  + +D  NAYVVF  EDS  AA+A N      K +RVDR    T  DPKR+VF+GN+ F A ED IR H    LE      G   VE VR++RD +T  GKGFG+VLLKD  + A AL+L+G+    R++RV+ CGKR K  + D   R
Sbjct:  104 EAKVEVAPKEEEDDEKAP--RTIFVGNVSLEATAEELKKFFSSCGKVESARLRSVPVAGCAVDQHGKQNLVKKVCANKKLFVEGRDNCNAYVVFASEDSIAAALALNGADFHEKKIRVDRKVLTT--DPKRTVFVGNMAFTATEDEIRNHFESNLEKDDEDEGSALVESVRIIRDKDTHLGKGFGYVLLKDVTTAAKALKLDGSKIGKRELRVSVCGKRFKTTATDKTAR 329          
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|669147326|ref|XP_008609225.1| (hypothetical protein SDRG_05290 [Saprolegnia diclina VS20] >gi|530738821|gb|EQC37063.1| hypothetical protein SDRG_05290 [Saprolegnia diclina VS20])

HSP 1 Score: 190.274 bits (482), Expect = 1.992e-51
Identity = 103/218 (47.25%), Postives = 132/218 (60.55%), Query Frame = 0
Query:  202 DKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEG-----GPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATR 414
            D EKA   RTIFVGN+    + + ++  F   G++ES R RS+ +AG  ID HG Q L KKV ANK+L  + +D  NAYVVF  EDS  AA+A N      K +RVDR    T  DPKR+VF+GN+ F A ED IR H    LE      G   VE VR++RD +T  GKGFG+VLLKD  + A AL+L+G+    R++RV+ CGKR K  + D   R
Sbjct:  117 DDEKAP--RTIFVGNVSLEATAEELKKFFSSCGKVESARLRSVPVAGCAIDQHGKQNLVKKVCANKKLFVEGRDNCNAYVVFASEDSIAAALALNGAEFHEKKIRVDRKVLTT--DPKRTVFVGNMAFAATEDEIRNHFESNLEKDDEDEGSALVESVRIIRDKDTHLGKGFGYVLLKDVTTAAKALKLDGSKIGKRELRVSVCGKRFKTTATDKTAR 330          
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|299470988|emb|CBN78849.2| (white-brown-complex ABC transporter family (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 191.045 bits (484), Expect = 2.410e-49
Identity = 122/259 (47.10%), Postives = 152/259 (58.69%), Query Frame = 0
Query:  204 EKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSD-AKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAKRRLEAAATKRNLNAPQFPPGARPEIIKASFEGRRASDT 461
            ++ KE RT+FVGNLPTS + K+V+  FKEYG +ESVR RS+A+ G  +D  G+Q+L +KV  N+ ++ +  K + NAYVV+    S E A+AAN   V  KH+RVDR  S    D  RSVFLGNLP DA E+ +R   A +LEGGP  VEGVRLVRD  T  GKGFG+VLL D+A  AAAL L GT  +GR +RV  CGKR K R                        K  L   +F          ASFEGRR +D 
Sbjct:  324 DEEKESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVQGMAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDCASVEKALAANGTDVGGKHVRVDRAKSGEY-DHTRSVFLGNLPMDAGEEEVRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALQGTKLKGRPLRVMPCGKRTKGR--------------------GGVAKPGLEDHKF----------ASFEGRRTTDV 551          
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|1173947808|gb|OQR95989.1| (RNA-binding protein [Achlya hypogyna])

HSP 1 Score: 182.185 bits (461), Expect = 3.004e-48
Identity = 97/210 (46.19%), Postives = 127/210 (60.48%), Query Frame = 0
Query:  210 RTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEG-----GPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATR 414
            RTIFVGN+    + + ++  F   G++ES R RS+ +AG  +D HG Q L KKV ANK+L  + +D  NAYVVF  E+S E A+A N      K LRVDR    TI D KR+VF+GN+ F A ED +R H    +E      G   VE VRL+RD +T  GKGFG+VLLKD  +   AL+LNG+    R++RV+ CGKR K  + D   R
Sbjct:  126 RTIFVGNVSLEATAEELKKFFSSCGKVESARLRSLPVAGCAVDQHGKQNLVKKVCANKKLFVEGRDNCNAYVVFASEESIEKALALNGAEFHEKKLRVDR-KVPTI-DAKRTVFVGNVAFTATEDDLRRHFEANIEKDDEDEGSALVESVRLIRDKDTHLGKGFGYVLLKDVPTATKALKLNGSKIGKRELRVSVCGKRFKSTAADKTPR 333          
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|301111538|ref|XP_002904848.1| (RNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262095178|gb|EEY53230.1| RNA-binding protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 175.637 bits (444), Expect = 1.468e-46
Identity = 96/234 (41.03%), Postives = 140/234 (59.83%), Query Frame = 0
Query:  200 DIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGG--PGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAV----GAKRRLE 427
            ++  ++ KERRT+FVGN+    ++K ++  F   G++ESVR R + +AG  + D GNQ+L  KV ANK++L+ AKD  NAYV F+ E SAEAAI  N   +    +RVDR   E + D +RSVF+GN+PF   ++ I     + L+    P  +E VRL+RD E+  GKGFG++LLK  A VA  L L     + R++RV  CGKR K    +  T+ K + +    GA+ R+ 
Sbjct:   64 ELTPDELKERRTVFVGNVSLDATQKDIKKHFSVCGQVESVRLRHLPIAGCAVGDAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSAEAAIKLNGTTLVQMKIRVDR--CEPVIDARRSVFIGNVPFKCTDEQIFQFFLKRLKSDDEPEPIENVRLIRDRESGLGKGFGYLLLKTPALVAKTLTLRNLKMETRELRVQVCGKRFKNLRGEETTKEKFEGLRASAGARARIH 295          
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|602644063|ref|XP_007428486.1| (PREDICTED: RNA-binding protein 34 isoform X2 [Python bivittatus])

HSP 1 Score: 174.866 bits (442), Expect = 1.917e-46
Identity = 99/253 (39.13%), Postives = 146/253 (57.71%), Query Frame = 0
Query:  172 RDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAAN-NRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAK 423
            ++ H+   T++  S  +D      + +V++ KEK K +RT+FVGNLP + + + ++  FKEYG+IES+RFRS+  A   I        +KK++A KR +       NAY+VF  E +A  A+  N   +    H+RVD     +  D KRS+F+GNLP++  +DT+R H  +      G+V G+RLVRD  T  GKGFG+VL +   +V  AL+LN +  QGRK+RV  C KR K    +S    KS +VG K
Sbjct:   71 KNRHFHLATKHLSSSEEDAQIEKKKIQVNLAKEKLKNKRTVFVGNLPVTYTAQMLKAFFKEYGQIESIRFRSLIPAENAI--------SKKMAAIKRKIHPNMKYINAYIVFKEESAANDALKCNGTEITSGFHIRVDLASKSSCHDNKRSIFVGNLPYEIDDDTVRNHFLE-----CGNVTGIRLVRDRNTGIGKGFGYVLFETTDAVHLALKLNQSELQGRKLRVQRCVKREKAEQKNSNKNTKS-SVGLK 309          
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|1004673449|ref|XP_007428485.2| (PREDICTED: RNA-binding protein 34 isoform X1 [Python bivittatus])

HSP 1 Score: 174.481 bits (441), Expect = 8.548e-46
Identity = 99/253 (39.13%), Postives = 146/253 (57.71%), Query Frame = 0
Query:  172 RDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAAN-NRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVKVRSNDSATRVKSKAVGAK 423
            ++ H+   T++  S  +D      + +V++ KEK K +RT+FVGNLP + + + ++  FKEYG+IES+RFRS+  A   I        +KK++A KR +       NAY+VF  E +A  A+  N   +    H+RVD     +  D KRS+F+GNLP++  +DT+R H  +      G+V G+RLVRD  T  GKGFG+VL +   +V  AL+LN +  QGRK+RV  C KR K    +S    KS +VG K
Sbjct:  134 KNRHFHLATKHLSSSEEDAQIEKKKIQVNLAKEKLKNKRTVFVGNLPVTYTAQMLKAFFKEYGQIESIRFRSLIPAENAI--------SKKMAAIKRKIHPNMKYINAYIVFKEESAANDALKCNGTEITSGFHIRVDLASKSSCHDNKRSIFVGNLPYEIDDDTVRNHFLE-----CGNVTGIRLVRDRNTGIGKGFGYVLFETTDAVHLALKLNQSELQGRKLRVQRCVKREKAEQKNSNKNTKS-SVGLK 372          
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|970653510|gb|KUF91973.1| (Nucleolar protein 12 [Phytophthora nicotianae])

HSP 1 Score: 175.252 bits (443), Expect = 1.427e-45
Identity = 91/201 (45.27%), Postives = 125/201 (62.19%), Query Frame = 0
Query:  207 KERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGG--PGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVK 405
            K RRT+FVGN+    S+K ++N F   G++ESVR R + +AG  +   GNQ+L  KV ANK++L+ AKD  NAYV F+ E S EAA+  N   +  K +RVDR  SE + D +RSVF+GN+PF   ++ +    ++ L     P  VE VRL+RD E+  GKGFG++LLK  A VA  L L     + R++RV  CGKR K
Sbjct:  155 KARRTVFVGNVSLDASQKDIKNHFSVCGKVESVRLRHLPIAGCAVGQAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSVEAALKLNGTTLVQKKIRVDR--SEPVIDARRSVFIGNVPFKCTDEQMLQFFSKRLRSDEEPEPVENVRLIRDRESGLGKGFGYILLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK 353          
BLAST of EWM29699.1 vs. NCBI_GenBank
Match: gi|675178409|ref|XP_008898089.1| (hypothetical protein PPTG_06080 [Phytophthora parasitica INRA-310] >gi|567946952|gb|ETK72752.1| hypothetical protein L915_20215 [Phytophthora parasitica] >gi|567975663|gb|ETL26206.1| hypothetical protein L916_20082 [Phytophthora parasitica] >gi|568102335|gb|ETN17017.1| hypothetical protein PPTG_06080 [Phytophthora parasitica INRA-310] >gi|570936982|gb|ETP02239.1| hypothetical protein F441_20664 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 175.252 bits (443), Expect = 1.517e-45
Identity = 91/201 (45.27%), Postives = 125/201 (62.19%), Query Frame = 0
Query:  207 KERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGG--PGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKRVK 405
            K RRT+FVGN+    S+K ++N F   G++ESVR R + +AG  +   GNQ+L  KV ANK++L+ AKD  NAYV F+ E S EAA+  N   +  K +RVDR  SE + D +RSVF+GN+PF   ++ +    ++ L     P  VE VRL+RD E+  GKGFG++LLK  A VA  L L     + R++RV  CGKR K
Sbjct:  155 KARRTVFVGNVSLDASQKDIKNHFSVCGKVESVRLRHLPIAGCAVGQAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSVEAALKLNGTTLVQKKIRVDR--SEPVIDARRSVFIGNVPFKCTDEQMLQFFSKRLRSDEEPEPVENVRLIRDRESGLGKGFGYILLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK 353          
The following BLAST results are available for this feature:
BLAST of EWM29699.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112275|gb|EWM29699.1|0.000e+0100.00rna binding protein [Nannochloropsis gaditana][more]
gi|813132369|ref|XP_012197753.1|1.646e-5145.65hypothetical protein SPRG_19497 [Saprolegnia paras... [more]
gi|669147326|ref|XP_008609225.1|1.992e-5147.25hypothetical protein SDRG_05290 [Saprolegnia dicli... [more]
gi|299470988|emb|CBN78849.2|2.410e-4947.10white-brown-complex ABC transporter family (Partia... [more]
gi|1173947808|gb|OQR95989.1|3.004e-4846.19RNA-binding protein [Achlya hypogyna][more]
gi|301111538|ref|XP_002904848.1|1.468e-4641.03RNA-binding protein, putative [Phytophthora infest... [more]
gi|602644063|ref|XP_007428486.1|1.917e-4639.13PREDICTED: RNA-binding protein 34 isoform X2 [Pyth... [more]
gi|1004673449|ref|XP_007428485.2|8.548e-4639.13PREDICTED: RNA-binding protein 34 isoform X1 [Pyth... [more]
gi|970653510|gb|KUF91973.1|1.427e-4545.27Nucleolar protein 12 [Phytophthora nicotianae][more]
gi|675178409|ref|XP_008898089.1|1.517e-4545.27hypothetical protein PPTG_06080 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna978rna978Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications