rna9777, rna9777 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9777
Unique Name	rna9777
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2861
Alignment location	KK037256.1:87153..88742 -

Link to JBrowse

Properties


Property Name	Value
Product	Heat shock protein DnaJ
Orig transcript id	gnl\|cribi\|Naga_100061g17.8569.mrna
Orig protein id	gnl\|cribi\|Naga_100061g17.8569
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:87153..88742 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100061g17	gene9493	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20936.1	cds9746	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9777	rna9777-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:87153..88742-
coding sequence from alignment at KK037256.1:87153..88742-

mRNA sequence

>rna9777 ID=rna9777|Name=rna9777|organism=Nannochloropsis gaditana|type=mRNA|length=2861bp
TCACGGCCCCTACTCTAGCGCCGCTTCTCTCACTTTAATAGATCTTCGAA
GCTATGAACAATCTATTTCAAAATTATGGCATTTTGTTTGAAATGTGATA
GTCATGACGGTGTTTTGGTGCAATGCAAGCCGTGTCAGCAAGATCGCAAT
TTTTTTTTCTTCCTGCACCTGGTTGCTCGTTCTCTACATCCGTTTCTTAG
GTCCCTCCTTATTATTCATTCACGACATTACGACGCGGAAACATTTATAA
GTACCTGCAGATAATCTTTCTGGGTGCACTGCACAGTCGATTTCCAGGCG
TTTCATCGAGTAGGACTCTGCCGGAAAACCTAGGAGAAGAAAGATCTCGA
ACTCGCGGCAAGCTCCCTGACATTACGCGAGATCTATGGCACGAGCTGAA
CGTGACGAAGTCGACAACCATGTGCATGGGGTAGACAATGAAGAGAATAA
GAGCCTTGCAATTTCAAAGAAGGATTTCCCTGATGCTGATGCTGAAGTTG
GCGGACTGGACATGCTTCAGCACCAGGCCAGTCGTCTGCATGCGAACTCC
CAAGAAGTTGTACACGCCAAGAGTCCGGCAAGTTTCGCTCGACCATTTTC
GTCCACTACCTTACCAACCATCCCAATGTTTGACTCTAAAAAGCAGACAT
ACCCCGCTGAATCGATGAAGTGCTATCAAGATGCCAAAGCTAGAGCTATG
GAAAGTCTTGCTCAAAACTATGCCTTGAAACTGGATGTAGTCAAACAGAT
AGAAGAATTCGAGATCGCACGCCGAGAGTATTTTGACAATAAGCGAGGGT
CAAATGCTATTTACTTGATGGCGTTTACCGAGATTTTGAAACGGAGCAAG
GCTGAGAACACTCAATATCTTGAGTTTTTCAATCGTAAAGTCGCAGCGGA
AAATACCTATGTTAGGTGCATCTTGGAAATGATAGAGGAGTCGGAAAAAT
TGAAGCACGGAGGTGCCCACAAATCCCCTTGTGAAAGGACATCGGTAGAT
CCAAAAAAGAATGCACTTGATGATCTTATGGCTGTGCAAGAGCACATGGT
GCAGCAAGTACATATTTTTGCGAAAGTCATTGAAACGAATATTATTCCCG
TTCTTGAGGAAATGATCACCACATTCAATGCTTCTGAGGAGTCCATTCTT
CAAGATGGCGGAACGTACTTGGAGGATATCGACGTAGCCGAAGACCACGT
GCAGCAAGCCTTCATCCAGTATCGCGACCAAGCACAAGCTTTGGAAAAGA
TGGGTATGTCGGAGGGGCAGGATTTATGGATATATGAGATGCACTATCGG
ATGGCTGTTGTCATTTTGCTGGAGACTTGGGAACTCTCTTCCACTGCCTT
GACTGCAATGTTTGCGCGAATGAAGGACACAGAGATGGCTAGGCGACAGG
CAATCCACTCGGCCCTCCAAACGTTGAATGAAGAGCAGACGGCTTACTGG
AGGAAACTCCCCCACCTAGGGGTGACGCTCTCCTCTTTGGTTCAAAGCCA
TGCTACAGACCCACGTTTGATCGAAAAGCAGATTGGAGCCGATATTCGTA
TGGGCGCGAAGCGATTGGGACTGTCGGAGGAAGGTATACATCTCAAGGGT
CAGATTATGGCGACCCGTCCCCTGCGCGTCTTTACACAAGCTTCGATACA
GTCTGCCAATTTGGGAAAGACCTCCAGTTTTAACGAGTCCACAATGGAAC
ATCGAATCAAATCAGGGTCCGGGAGCTTTCGTTGTGAGACCGAGGTGGTG
CCGAACAAAAAAACTGCGAAAGCGAACAAGAATAGGAGGAAGAAACAGGC
CAAGAAATTGTTTTCGCAGAGACTGGATGGGCCTCTTCAAAGCCCCTTAA
TCACACGAGCACAGATTTTTGAACAGAAGAGTACTAATGTTTTCACATGT
AAGAGGCATGTTCTCGCTGTTATGACAATAGACAGCTACCTGCATATATT
TGATCTTCCTCAAGTTTCAATCCGAAGTCAGACGGTGGCCGCCAACACCG
CATCTCCTGCTGCGCAAGCCGCGCTATACGGCCTAATTAAGAGGCCGGAT
CATGTAAGCCGAGCGGTAGGACATACCTCGTCCGTCATCTCCAGCAATGC
CGTCTTCACCTCCGACAAAGAGGGCACCTTGAAGACTTTGGACTTAGTTT
CTCCTCGTCTAACATTAAATCTGGCCCAGTGTGAGGCGTATGTGAAAGGT
GCGGCGAGCAAGAAAGACACTTGTCTTGAAATTGTTGAGGTTGGAGCAGG
GCTAGGCAGCAAAGGCTTCAAAAAGGTCTTGGAGGGTCTAGCCCACAGGC
GTGTAGTCGTTCTTAAAGGGAACACCCAAGAAGAGCTAGAGGACTGGTGC
GGGGTGATAGATGCGTGCAAAAGGATGTCAAGAGCAGGAAGTCCTGCAGT
TGTTGGTGCAAGGTGACTCGATATGACATCTTGATAGTACACAAACCCTG
AAAAGGCTGTTTTCTTCGTATTTGATCGACCAAGGAATGAGGGATTTGGT
ACGAGCTTGATCTTCAGTATGTATGATTTTCAGAAAATGTCACAAGGTTT
ATCTCGCGAGTGTAGCAGAAGGCGCCATGCAAGGTGTGAGGCTGAATGAG
GCAATACGTATAGATTAAATCTGAAAATTCTTTTTTGTGAGTAATGTCAG
AATAAATGGATCTAAAACTTGAAAAACACTACAAATGTGCCTAAATTACG
TATGAGAGTTCTACGATAAAAGGACATAAGAGGGCATAAGCCATCAATGG
CAGCACAATTCTCTAAGATGATTCTTCTGTTTTGCTGCCGCACAAGGTTT
GCATGGCAGATAAATTCTTATTTTATTGTCCCCAAAAGTAAATAAGATCT
CCCTCTGTTCC

protein sequence of rna9777

>rna9777-protein ID=rna9777-protein|Name=rna9777|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MESNSGGEELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEA
RQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGG
SRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFFSEERVGSGNGRGNF
PFGFGGEGLAPRTSFFSPPFFGGAMQQQQGFGFRPFSFAPFTDFDEGGIF
QQQFQSSSSTSSRNGFSMSHSSIGNTRSSSSSMTGAGGAISSMSSSMTSQ
DMGRGTRRSVRTVTTVGAGGRSRTRRETTVSYPDGRCETTVEEQEATPSP
DTDAHTRGGGSGMYYLQQQHQQQQGSSRGWM

mRNA from alignment at KK037256.1:87153..88742-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9777 ID=rna9777|Name=rna9777|organism=Nannochloropsis gaditana|type=mRNA|length=1590bp|location=Sequence derived from alignment at KK037256.1:87153..88742- (Nannochloropsis gaditana)
AAGGCGAGCGACGGACAGAAAACCGAGTCCTCCACGGATACACTGTCTGT
GAGTGCACCTAGGGGCCTGTGGGAGGGCCAGAGTGGATTCGAGGAGGCAG
CCTCAGTGTGGGGTCGGGTTGATTGAACTTGTCGCGGAAGCGAGCGAGTC
GTTGTCGTCCACGTCGCGGGGCTACGAAATTGGAAAGTCTCGTGATATGG
CCAAAGCTGCAAGAATTTTAGCGGGCCACGGCATCACATGTGCACAATAT
TGTTATTCATACCAATGGACAGGATCTTTTATCGAAACAGGTTGTTTCGA
GCCCTGAATACAAGCCATGGAAAGTAACTCGGGAGGGGAAGAATTGTGTT
TTTATGAAATTCTGGGGGTACCGCCCACCAGCTCCACTGATGACATCAAA
CAAGCGTACCGGCGATTAGCGCTTCAGATGCATCCCGATCGTAATCGTGG
CAATGAGGAAGAAGCGCGGCAGACGTTCGTGCTTATTGGAGAGGCCTACG
AGGTGTTGAGCGACCCGGAGCGACGTGACGTTTACGATCGCTTTGGGCGC
CAGGGACTGGCAGCTCATGATCAAGGTCGCAATCCTGCCGATTCATCCCC
TCGTGGTCCAGGCGGTAGTCGGGGAAGCGGTGTGGAGGATTTCTTCTCTT
CCGCAGGGCATCATTTCCATCGTGACGCCACCTTCGGATTCCCACATGCG
CAAGAAATATTTGACGCTTTTTTCTCTGAAGAACGCGTAGGTTCCGGGAA
TGGGCGAGGCAACTTTCCCTTTGGGTTTGGCGGGGAAGGACTTGCCCCGA
GGACATCCTTCTTTTCCCCCCCATTTTTCGGCGGTGCCATGCAGCAGCAG
CAGGGATTTGGCTTTCGTCCGTTCTCTTTCGCTCCCTTCACAGACTTCGA
TGAAGGGGGAATTTTTCAGCAGCAATTCCAAAGCAGTAGCAGCACCAGCA
GTCGCAACGGCTTTTCCATGAGTCATAGCAGTATCGGTAACACCCGGAGC
AGCAGTAGCAGTATGACAGGTGCCGGTGGTGCGATCAGCAGCATGTCTTC
AAGTATGACCAGTCAGGATATGGGCAGGGGCACGAGGCGGTCTGTAAGGA
CTGTAACGACAGTGGGAGCGGGTGGTAGGAGTCGAACCCGGAGGGAGACA
ACCGTGAGCTACCCGGATGGGCGGTGCGAAACGACAGTGGAGGAGCAGGA
AGCAACCCCGAGTCCTGATACAGATGCCCATACGAGAGGAGGAGGGTCCG
GAATGTACTATCTTCAACAGCAGCATCAACAACAGCAAGGTAGTAGCAGA
GGATGGATGTGAAGAGATGTCTTCTACCGAAAATGTCAATGAGGGGAAAA
GAATAGACGGATGATGAGCTCTCTAAACAATGGAGGTTATTCGTGAAAAT
CAACTTGCCCCCACGTTATAACAGATTATTTGCTTTGGAAAGATCTGAGA
GCGACATGAGCACATTAGGTCGCGGATCAAATATTTTGGTTTCTTGTTGT
CTCACAACCCCAAGTGTCACATACGATGATTTAGCATCGTCTCTTCCATT
TTTCATGTCATGTATCGCACTTATGATGTTTAATGCCACT

Coding sequence (CDS) from alignment at KK037256.1:87153..88742-

>rna9777 ID=rna9777|Name=rna9777|organism=Nannochloropsis gaditana|type=CDS|length=996bp|location=Sequence derived from alignment at KK037256.1:87153..88742- (Nannochloropsis gaditana)
ATGGAAAGTAACTCGGGAGGGGAAGAATTGTGTTTTTATGAAATTCTGGG
GGTACCGCCCACCAGCTCCACTGATGACATCAAACAAGCGTACCGGCGAT
TAGCGCTTCAGATGCATCCCGATCGTAATCGTGGCAATGAGGAAGAAGCG
CGGCAGACGTTCGTGCTTATTGGAGAGGCCTACGAGGTGTTGAGCGACCC
GGAGCGACGTGACGTTTACGATCGCTTTGGGCGCCAGGGACTGGCAGCTC
ATGATCAAGGTCGCAATCCTGCCGATTCATCCCCTCGTGGTCCAGGCGGT
AGTCGGGGAAGCGGTGTGGAGGATTTCTTCTCTTCCGCAGGGCATCATTT
CCATCGTGACGCCACCTTCGGATTCCCACATGCGCAAGAAATATTTGACG
CTTTTTTCTCTGAAGAACGCGTAGGTTCCGGGAATGGGCGAGGCAACTTT
CCCTTTGGGTTTGGCGGGGAAGGACTTGCCCCGAGGACATCCTTCTTTTC
CCCCCCATTTTTCGGCGGTGCCATGCAGCAGCAGCAGGGATTTGGCTTTC
GTCCGTTCTCTTTCGCTCCCTTCACAGACTTCGATGAAGGGGGAATTTTT
CAGCAGCAATTCCAAAGCAGTAGCAGCACCAGCAGTCGCAACGGCTTTTC
CATGAGTCATAGCAGTATCGGTAACACCCGGAGCAGCAGTAGCAGTATGA
CAGGTGCCGGTGGTGCGATCAGCAGCATGTCTTCAAGTATGACCAGTCAG
GATATGGGCAGGGGCACGAGGCGGTCTGTAAGGACTGTAACGACAGTGGG
AGCGGGTGGTAGGAGTCGAACCCGGAGGGAGACAACCGTGAGCTACCCGG
ATGGGCGGTGCGAAACGACAGTGGAGGAGCAGGAAGCAACCCCGAGTCCT
GATACAGATGCCCATACGAGAGGAGGAGGGTCCGGAATGTACTATCTTCA
ACAGCAGCATCAACAACAGCAAGGTAGTAGCAGAGGATGGATGTGA

Synonyms

Publications