EWM20936.1, cds9746 (CDS) Nannochloropsis gaditana

Overview
NameEWM20936.1
Unique Namecds9746
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:87431..88426 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20936.1
ProductHeat shock protein DnaJ
Orig transcript idgnl|cribi|Naga_100061g17.8569.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:87431..88426 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR018253DnaJ_domain_CS
IPR001623DnaJ_domain
Homology
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|585100892|gb|EWM20936.1| (Heat shock protein DnaJ [Nannochloropsis gaditana])

HSP 1 Score: 662.914 bits (1709), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0
Query:    1 MESNSGGEELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFFSEERVGSGNGRGNFPFGFGGEGLAPRTSFFSPPFFGGAMQQQQGFGFRPFSFAPFTDFDEGGIFQQQFQSSSSTSSRNGFSMSHSSIGNTRSSSSSMTGAGGAISSMSSSMTSQDMGRGTRRSVRTVTTVGAGGRSRTRRETTVSYPDGRCETTVEEQEATPSPDTDAHTRGGGSGMYYLQQQHQQQQGSSRGWM 331
            MESNSGGEELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFFSEERVGSGNGRGNFPFGFGGEGLAPRTSFFSPPFFGGAMQQQQGFGFRPFSFAPFTDFDEGGIFQQQFQSSSSTSSRNGFSMSHSSIGNTRSSSSSMTGAGGAISSMSSSMTSQDMGRGTRRSVRTVTTVGAGGRSRTRRETTVSYPDGRCETTVEEQEATPSPDTDAHTRGGGSGMYYLQQQHQQQQGSSRGWM
Sbjct:    1 MESNSGGEELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFFSEERVGSGNGRGNFPFGFGGEGLAPRTSFFSPPFFGGAMQQQQGFGFRPFSFAPFTDFDEGGIFQQQFQSSSSTSSRNGFSMSHSSIGNTRSSSSSMTGAGGAISSMSSSMTSQDMGRGTRRSVRTVTTVGAGGRSRTRRETTVSYPDGRCETTVEEQEATPSPDTDAHTRGGGSGMYYLQQQHQQQQGSSRGWM 331          
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|553192421|ref|XP_005855567.1| (hypothetical protein NGA_2108900 [Nannochloropsis gaditana CCMP526] >gi|422293494|gb|EKU20794.1| hypothetical protein NGA_2108900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 659.448 bits (1700), Expect = 0.000e+0
Identity = 329/331 (99.40%), Postives = 329/331 (99.40%), Query Frame = 0
Query:    1 MESNSGGEELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFFSEERVGSGNGRGNFPFGFGGEGLAPRTSFFSPPFFGGAMQQQQGFGFRPFSFAPFTDFDEGGIFQQQFQSSSSTSSRNGFSMSHSSIGNTRSSSSSMTGAGGAISSMSSSMTSQDMGRGTRRSVRTVTTVGAGGRSRTRRETTVSYPDGRCETTVEEQEATPSPDTDAHTRGGGSGMYYLQQQHQQQQGSSRGWM 331
            MESNSGGEELCFYEILGVPP SSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFFSEERVGSGNGRGNFPFGFGGEGLAPRTSFFSPPFFGGAMQQQQGFGFRPFSFAPFTDFDEGGIFQQQFQSSSSTS RNGFSMSHSSIGNTRSSSSSMTGAGGAISSMSSSMTSQDMGRGTRRSVRTVTTVGAGGRSRTRRETTVSYPDGRCETTVEEQEATPSPDTDAHTRGGGSGMYYLQQQHQQQQGSSRGWM
Sbjct:    1 MESNSGGEELCFYEILGVPPASSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFFSEERVGSGNGRGNFPFGFGGEGLAPRTSFFSPPFFGGAMQQQQGFGFRPFSFAPFTDFDEGGIFQQQFQSSSSTSGRNGFSMSHSSIGNTRSSSSSMTGAGGAISSMSSSMTSQDMGRGTRRSVRTVTTVGAGGRSRTRRETTVSYPDGRCETTVEEQEATPSPDTDAHTRGGGSGMYYLQQQHQQQQGSSRGWM 331          
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|1084301581|ref|XP_018653881.1| (putative dnaj homolog subfamily B member 2, 6, 8 [Schistosoma mansoni] >gi|360043739|emb|CCD81285.1| putative dnaj homolog subfamily B member 2, 6, 8 [Schistosoma mansoni])

HSP 1 Score: 103.605 bits (257), Expect = 3.192e-22
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    8 EELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGR 78
            E+ C+Y+ILG+  T+S D+IK+AYRRLAL+ HPD+N   +EEA + F LI EAYEVLSDP++RD+YDR GR
Sbjct:    2 EQTCYYKILGIEKTASGDEIKKAYRRLALKWHPDKNPDKKEEAEKCFKLISEAYEVLSDPKKRDIYDRRGR 72          
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|844866431|ref|XP_012799310.1| (DnaJ subfamily B member 8 [Schistosoma haematobium] >gi|685964677|gb|KGB39551.1| DnaJ subfamily B member 8 [Schistosoma haematobium])

HSP 1 Score: 103.605 bits (257), Expect = 3.394e-22
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    8 EELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGR 78
            E+ C+Y+ILG+  T+S D+IK+AYRRLAL+ HPD+N   +EEA + F LI EAYEVLSDP++RD+YDR GR
Sbjct:    2 EQTCYYKILGIEKTASGDEIKKAYRRLALKWHPDKNPDKKEEAEKCFKLISEAYEVLSDPKKRDIYDRRGR 72          
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|514449909|ref|XP_003464046.2| (PREDICTED: dnaJ homolog subfamily B member 2 [Cavia porcellus])

HSP 1 Score: 103.605 bits (257), Expect = 4.715e-22
Identity = 67/167 (40.12%), Postives = 88/167 (52.69%), Query Frame = 0
Query:   11 CFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFFSEERVGSGNGRGNFPFGFGGEGLAP------RTSFFSPPFF 171
             +YEIL VPP++S DDIK+AYR+ ALQ HPD+N  N+E A + F  + EAYEVLSD  +R++YDR+GR+GL     G + A++   GPG                      TF F   +E+F  FF     GSG+     PF    + L P      R S  S PFF
Sbjct:    3 SYYEILDVPPSASADDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGAGAGPSRAEAGGGGPG---------------------FTFSFRSPEEVFREFF-----GSGD-----PFAELFDDLGPFSELQNRGSRHSGPFF 138          
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|29841011|gb|AAP06024.1| (SJCHGC09407 protein [Schistosoma japonicum] >gi|226470636|emb|CAX76751.1| hypotherical protein [Schistosoma japonicum] >gi|226470638|emb|CAX76752.1| hypotherical protein [Schistosoma japonicum] >gi|226470640|emb|CAX76753.1| hypotherical protein [Schistosoma japonicum] >gi|226470644|emb|CAX76755.1| hypotherical protein [Schistosoma japonicum] >gi|226470646|emb|CAX76756.1| hypotherical protein [Schistosoma japonicum] >gi|226470652|emb|CAX76759.1| hypotherical protein [Schistosoma japonicum] >gi|226470656|emb|CAX76761.1| hypotherical protein [Schistosoma japonicum] >gi|226470658|emb|CAX76762.1| hypotherical protein [Schistosoma japonicum] >gi|226473146|emb|CAX71259.1| hypotherical protein [Schistosoma japonicum])

HSP 1 Score: 102.449 bits (254), Expect = 1.054e-21
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 0
Query:    9 ELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGR 78
            + C+YEILGV  T+S DDIK+AYRRLAL+ HPD+N   +EEA + F LI EAYE+LSDP++R++YDR GR
Sbjct:    3 QTCYYEILGVHKTASGDDIKKAYRRLALKWHPDKNPDKKEEAERQFKLISEAYEILSDPKKRNIYDRRGR 72          
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|226470650|emb|CAX76758.1| (hypotherical protein [Schistosoma japonicum] >gi|226470654|emb|CAX76760.1| hypotherical protein [Schistosoma japonicum])

HSP 1 Score: 102.449 bits (254), Expect = 1.109e-21
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 0
Query:    9 ELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGR 78
            + C+YEILGV  T+S DDIK+AYRRLAL+ HPD+N   +EEA + F LI EAYE+LSDP++R++YDR GR
Sbjct:    3 QTCYYEILGVHKTASGDDIKKAYRRLALKWHPDKNPDKKEEAERQFKLISEAYEILSDPKKRNIYDRRGR 72          
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|145508704|ref|XP_001440296.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124407513|emb|CAK72899.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 100.908 bits (250), Expect = 2.045e-21
Identity = 40/74 (54.05%), Postives = 59/74 (79.73%), Query Frame = 0
Query:    8 EELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGL 81
            +E  +YE+LGV  T+S D+IK+AYR+LA++ HPD+N  N++EA++ F+ IGEAY VLSD ++R +YDR+G  GL
Sbjct:    4 KEQDYYEVLGVSKTASDDEIKKAYRKLAIKWHPDKNPNNKQEAQEKFIKIGEAYSVLSDKDKRAIYDRYGHDGL 77          
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|1134881157|gb|OMJ78801.1| (hypothetical protein SteCoe_21329 [Stentor coeruleus])

HSP 1 Score: 99.7525 bits (247), Expect = 4.271e-21
Identity = 56/125 (44.80%), Postives = 72/125 (57.60%), Query Frame = 0
Query:   12 FYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFF 136
            +YEILG+P +++ D IK+AYR+LAL+ HPD+N  N+ EA Q F  IGEAY VLSDP +R +YD++G +GL              RG  G       DF  S  HHF+      F  A EIF  FF
Sbjct:    7 YYEILGIPKSATDDQIKKAYRKLALKWHPDKNPENKNEAEQKFKEIGEAYSVLSDPNKRTIYDKYGFEGLEG------------RGASG-------DF--SGFHHFN------FTDASEIFRQFF 104          
BLAST of EWM20936.1 vs. NCBI_GenBank
Match: gi|198417911|ref|XP_002123973.1| (PREDICTED: dnaJ homolog subfamily B member 6-like [Ciona intestinalis])

HSP 1 Score: 100.523 bits (249), Expect = 7.905e-21
Identity = 69/183 (37.70%), Postives = 91/183 (49.73%), Query Frame = 0
Query:   12 FYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAGHHFHRDATFGFPHAQEIFDAFFSEERVGSGNGRGNFPFG-FGGEGLAPRTSFFSPPFFGGAMQQQQGFGFRPFSFAPFTD 193
            +YE+LG+   ++  DIK+AYR+LAL+ HPD+N  N+EEA + F  I EAYEVLSD ++R VYDR+G++GL     G       P                    +FH    F F   ++IF  FF     G+ N     PFG F GE  + R      PF G  M    G GF+ F F  F D
Sbjct:    4 YYEVLGIRKEATESDIKKAYRKLALKWHPDKNPDNQEEAEKRFKDISEAYEVLSDKDKRSVYDRYGKEGLTGGGGGGGAGAGMP--------------------NFH----FEFHSPEDIFQQFF-----GNQN-----PFGDFFGENSSSRRQRNQDPFAGFGM----GTGFQSFGFPEFND 148          
The following BLAST results are available for this feature:
BLAST of EWM20936.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100892|gb|EWM20936.1|0.000e+0100.00Heat shock protein DnaJ [Nannochloropsis gaditana][more]
gi|553192421|ref|XP_005855567.1|0.000e+099.40hypothetical protein NGA_2108900 [Nannochloropsis ... [more]
gi|1084301581|ref|XP_018653881.1|3.192e-2261.97putative dnaj homolog subfamily B member 2, 6, 8 [... [more]
gi|844866431|ref|XP_012799310.1|3.394e-2261.97DnaJ subfamily B member 8 [Schistosoma haematobium... [more]
gi|514449909|ref|XP_003464046.2|4.715e-2240.12PREDICTED: dnaJ homolog subfamily B member 2 [Cavi... [more]
gi|29841011|gb|AAP06024.1|1.054e-2162.86SJCHGC09407 protein [Schistosoma japonicum] >gi|22... [more]
gi|226470650|emb|CAX76758.1|1.109e-2162.86hypotherical protein [Schistosoma japonicum] >gi|2... [more]
gi|145508704|ref|XP_001440296.1|2.045e-2154.05hypothetical protein [Paramecium tetraurelia strai... [more]
gi|1134881157|gb|OMJ78801.1|4.271e-2144.80hypothetical protein SteCoe_21329 [Stentor coerule... [more]
gi|198417911|ref|XP_002123973.1|7.905e-2137.70PREDICTED: dnaJ homolog subfamily B member 6-like ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9777rna9777Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications