rna9772, rna9772 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9772
Unique Name	rna9772
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	942
Alignment location	KK037256.1:70253..72641 +

Link to JBrowse

Properties


Property Name	Value
Product	rho gtpase activating protein 2
Orig transcript id	gnl\|cribi\|Naga_100061g22.8556.mrna
Orig protein id	gnl\|cribi\|Naga_100061g22.8556
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:70253..72641 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100061g22	gene9488	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9772	rna9772-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20923.1	cds9741	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:70253..72641+
coding sequence from alignment at KK037256.1:70253..72641+

mRNA sequence

>rna9772 ID=rna9772|Name=rna9772|organism=Nannochloropsis gaditana|type=mRNA|length=942bp
ATGTCATTGAAAGCGACAAGCAGTAAACCTTACGTATACTCAAACCCCGA
ATCTTCAATATCTATGGATGACAAACGGAGCCTGCGCCATTTGCCGTCTA
AGACCAGGCTTATCCCCTCAGTCAAGCATACCCGCCCTAGCATTTCCTCC
GCCACGAGTCACTCATCAACCCGAGCACCTTTAAGCAGCCCTTCCTTTTG
GGGAAAAAGAACTAAGGTATCCGTTCGATGTTCGCGTTCAAATGTTCAAG
ATTGCGAGGCAGGGCATGAAAAAGATTTTTCAGAGGTTGAGAGCCAAAAA
CAGAGAGAGAAGGTAGGGCGCCAATGCCATATGTCTTACACGCGTGCTTG
CTCGCCTTTCGATTTAGCTGTAGTAGAAAGGATCTTGAAGGAAACAAGCG
GCGAAGAGATTGGCCCGCAGAAGAGTGAGCTATCAGACAGCAAAGACCGA
TGCGTGGAAGTCCTAAAAGATCACCAGCGGAAGAAAGCTCAAACGGGAAA
TGATTACAAGAGTGTTCCACGTCATATTCGGCTCCGATATCTTCCTACCG
AATGTCGGCAAGCGTCAACATGCATTGGCCCAGTCAAGCGAACTCAGGAC
CAGGCAGTCGTCGATATGGGAACTGAAATGACCCACGGAATAGAAGGGTT
TGAGCCGACGCCGTGTACCGACTGCAAAAAAGAATATTGTCGCCCGGTCT
GTTCACCGCTCCTCAAGCTCCATCAATTGTCGCAAGTCTTTGCAATCAGA
CAATGGCGTGGCAGAGAAATGCCGTGCCCTCACTCAGCTCAAAGTTGGAC
GAGCGATTGCTGCGACGATTCAATGGAGCAAGTCATCAAGCGGCTGGCGG
ATGAAATCGCCGATGAATTGGTGGAAGAGGCCGGAATGGAGCTAGAGGAT
GTCTTGCGTGGTGGCCGAGAGCCATTCTCTCTGAGTAATTAA

protein sequence of rna9772

>rna9772-protein ID=rna9772-protein|Name=rna9772|organism=Nannochloropsis gaditana|type=polypeptide|length=692bp
MATSLQGFPSEQATAHTLHTKTIRLPGLHRLLLRVQIADLPPSRRALWKD
THHQMRDVVALAGTTAKTIIRTLIESEIPAVSDRDIARFALVMVYPTREV
DGSLTHLMRTLNPHERPIKLVNSMLVEMEEMSKGTRKEGVRAIGMADSTG
GCPDSSDEGAPGGGREANYETQYGPQIGRDKGEGLIRVMSPRTAFTREQL
LDEHLLSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGW
SKPGLSGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFI
ALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEW
VQAMRRGVRLATENEWLAMAELVVGEEEKARERRIEGVVERAWAACTERG
RDNWKFEEGVTKGKECNASLNVEMGVAGAEERHPETRHVPSARLSVERES
RGMVKSRARELLRAKGSNLLGKGGINAEGKVERDRREKDGRRMELSELLG
FAIAVQEYREVCRLGDGPVLASSLKMWAKAQAVYDAFLRRWVRLLHDLER
ERGATGGLLKEEGRDGSVLPEWAGAIYIERQLLEYAACERRQRGGASLSR
GAARQGKKDDKRAGTAKTKLRALPRLLNKHGDSFAADPINTAPSVSLECE
EAELGRSLPPPPKELFDETLQELERSAQLIIERDSNKRNEEE

mRNA from alignment at KK037256.1:70253..72641+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9772 ID=rna9772|Name=rna9772|organism=Nannochloropsis gaditana|type=mRNA|length=2389bp|location=Sequence derived from alignment at KK037256.1:70253..72641+ (Nannochloropsis gaditana)
CCGGTGGGCCCTGCAAGTCCTTGGCCAACTCCACTCACGAAATTTTCTTC
CAAATGTCACAGCCATGCTTTCGCAAACTGGAACTGGATGGAAGTAGGAC
ACCAGAGTGTGCGGGCTTGCAGATTTCGGTCTTAATATGGCGACTTCTCT
TCAAGGTTTCCCGTCCGAGCAAGCTACCGCACATACTTTACATACGAAGA
CAATACGTCTACCAGGACTCCACCGTCTGCTCCTTCGTGTGCAAATCGCT
GATCTGGTACGTGACAGGCAATCAAATGCTTCTTTCTTGCGGAGGAAAAC
TGACCGCATTAAGGTGTTTGACCTTCGCCACTTTCTCGCACTAGCCTCCC
AGCAGACGGGCGCTTTGGAAGGACACGCATCACCAAATGCGAGATGTTGT
TGCTCTTGCCGGAACGACAGCAAAAACAATTATTCGTACTTTGATAGAGT
CGGAGATCCCCGCTGTGTCTGACCGTGATATAGCGCGTTTTGCCCTTGTG
ATGGTGTACCCAACGAGGGAGGTCGACGGGAGTTTAACACATCTGATGCG
CACGTTGAACCCTCACGAGCGGCCCATCAAATTGGTAAACTCTATGCTTG
TagaaatggaagaaatgTCAAAGGGCACACGGAAAGAGGGGGTCAGGGCC
ATCGGCATGGCAGACTCCACGGGCGGGTGTCCTGACTCCTCCGATGAGGG
GGCCCCGGGAGGCGGTCGTGAGGCAAACTACGAGACACAATACGGGCCGC
AGATAGGCCGCGATAAGGGCGAAGGACTCATAAGAGTTATGAGCCCGAGA
ACGGCCTTTACCCGCGAGCAGCTCTTGGACGAGCACCTCCTAAGCTGGGT
TCTCAAGGACACGGAGGGCCCGCCTTTGGACTTCCCGGGGTACCTGAGCG
GCCCTGAGGCCTCGGACGACGAGACGTCGCCGACTTGTCCAGCGGCCTCC
TGGTTCAGCGACCAGGCGGGGTGGAGCAAGCCCGGCTTGTCGGGTTATCT
TCTGAAGCGATCCTCCCGGGACCCGTGTCTTTGGCGCCGCCGCTGGTGCG
TCTTGGGGGAGGACAAATTCTGGTACATGAAAGCGAAGCATCGACGGAGC
ATGCGGGGAAAGGCGGCTTTTATCGCTCTGATGGGCATGCAGGTCCTGGA
CCTGGAATgtggcgaaggagagagccGAGAGCTGCAGCGCGTGGCCCcct
tgggcgtggaggtgcaGACCGCCGACCGGGTCTTCGTCTTCCGAGCCCTC
AGCCGCGAGCAGCAGGCGGAGTGGGTGCaggcgatgaggaggggagtgag
ACTGGCGACGGAGAATGAGTGGTTAGCAATGGCTGAGCTGGttgtgggag
aggaagaaaaagcgagggagaggaggatcgaGGGTGTAGTAGAGCGGGCT
TGGGCTGCTTGCAcagaaagaggcagggatAATTGGAAATTCGAAGAAGG
GGtaacgaaaggaaaagagtgTAACGCGTCCTTAAACGTCGAGATGGGAG
TCGCGGGGGCCGAAGAGAGGCACCCCGAAACTCGCCATGTTCCGTCCGCT
CGTCTaagcgtggagagggagagccgCGGGATGGTGAAGAGTCGAGCGAG
AGAGCTCTTGCGTGCAAAAGGCTCAAACTTAttaggcaagggagggataa
ATGCGGAGGGAAAAGTTGAAAGAGatagaagggagaaagacggaAGACGG
ATGGAGCTGTCGGAATTACTTGGCTTCGCGATCGCAGTCCAGGAATACAG
GGAGGTTTGCCGCTTGGGAGATGGTCCCGTACTGGCTTCGTCCTTGAAAA
TGTGGGCAAAGGCACAAGCTGTCTACGATGCGTTCTTGAGGAGGTGGGTG
CGACTTCTTCATGATctggagagagaaaggggggctACGGGAGGGCTGct
aaaggaggaaggaagggacggcaGTGTCTTGCCGGAATGGGCTGGAGCCA
TTTATATAGAGCGACAGCTTTTGGAGTACGCGGCCTGCGAGCGaagacag
aggggaggggcttcATTGTCAAGAGGGGCCGCTaggcaagggaagaagga
tgacAAAAGAGCCGGGACGGCCAAGACTAAGCTCCGAGCTCTTCCCCGTC
TGCTGAACAAGCATGGCGATTCCTTCGCGGCTGATCCAATCAATACAGCT
CCCTCGGTCTCATTAGAATGTGAAGAAGCTGAGCTAGGACGGTCTTTACC
GCCCCCACCCAAAGAACTCTTCGACGAGACTCTTCAGGAGCTTGAAAGAA
GTGCGCAATTGATCATAGAACGCGATTCAAACaagaggaatgaggaggag
taACGGAAGACTAGAATCCGCGAGGCGTGAGCCTTTATTGGCGCACTTTT
AAAAGAAAGTAAGTAAAAATGCAGGTAGCtgcgaaaagg

Coding sequence (CDS) from alignment at KK037256.1:70253..72641+

>rna9772 ID=rna9772|Name=rna9772|organism=Nannochloropsis gaditana|type=CDS|length=4158bp|location=Sequence derived from alignment at KK037256.1:70253..72641+ (Nannochloropsis gaditana)
ATGGCGACTTCTCTTCAAGGTTTCCCGTCCGAGCAAGCTACCGCACATAC
TTTACATACGAAGACAATACGTCTACCAGGACTCCACCGTCTGCTCCTTC
GTGTGCAAATCGCTGATCTGCCTCCCAGCAGACGGGCGCTTTGGAAGGAC
ACGCATCACCAAATGCGAGATGTTGTTGCTCTTGCCGGAACGACAGCAAA
AACAATTATTCGTACTTTGATAGAGTCGGAGATCCCCGCTGTGTCTGACC
GTGATATAGCGCGTTTTGCCCTTGTGATGGTGTACCCAACGAGGGAGGTC
GACGGGAGTTTAACACATCTGATGCGCACGTTGAACCCTCACGAGCGGCC
CATCAAATTGGTAAACTCTATGCTTGTagaaatggaagaaatgTCAAAGG
GCACACGGAAAGAGGGGGTCAGGGCCATCGGCATGGCAGACTCCACGGGC
GGGTGTCCTGACTCCTCCGATGAGGGGGCCCCGGGAGGCGGTCGTGAGGC
AAACTACGAGACACAATACGGGCCGCAGATAGGCCGCGATAAGGGCGAAG
GACTCATAAGAGTTATGAGCCCGAGAACGGCCTTTACCCGCGAGCAGCTC
TTGGACGAGCACCTCCTAAGCTGGGTTCTCAAGGACACGGAGGGCCCGCC
TTTGGACTTCCCGGGGTACCTGAGCGGCCCTGAGGCCTCGGACGACGAGA
CGTCGCCGACTTGTCCAGCGGCCTCCTGGTTCAGCGACCAGGCGGGGTGG
AGCAAGCCCGGCTTGTCGGGTTATCTTCTGAAGCGATCCTCCCGGGACCC
GTGTCTTTGGCGCCGCCGCTGGTGCGTCTTGGGGGAGGACAAATTCTGGT
ACATGAAAGCGAAGCATCGACGGAGCATGCGGGGAAAGGCGGCTTTTATC
GCTCTGATGGGCATGCAGGTCCTGGACCTGGAATgtggcgaaggagagag
ccGAGAGCTGCAGCGCGTGGCCCccttgggcgtggaggtgcaGACCGCCG
ACCGGGTCTTCGTCTTCCGAGCCCTCAGCCGCGAGCAGCAGGCGGAGTGG
GTGCaggcgatgaggaggggagtgagACTGGCGACGGAGAATGAGTGGTT
AGCAATGGCTGAGCTGGttgtgggagaggaagaaaaagcgagggagagga
ggatcgaGGGTGTAGTAGAGCGGGCTTGGGCTGCTTGCAcagaaagaggc
agggatAATTGGAAATTCGAAGAAGGGGtaacgaaaggaaaagagtgTAA
CGCGTCCTTAAACGTCGAGATGGGAGTCGCGGGGGCCGAAGAGAGGCACC
CCGAAACTCGCCATGTTCCGTCCGCTCGTCTaagcgtggagagggagagc
cgCGGGATGGTGAAGAGTCGAGCGAGAGAGCTCTTGCGTGCAAAAGGCTC
AAACTTAttaggcaagggagggataaATGCGGAGGGAAAAGTTGAAAGAG
atagaagggagaaagacggaAGACGGATGGAGCTGTCGGAATTACTTGGC
TTCGCGATCGCAGTCCAGGAATACAGGGAGGTTTGCCGCTTGGGAGATGG
TCCCGTACTGGCTTCGTCCTTGAAAATGTGGGCAAAGGCACAAGCTGTCT
ACGATGCGTTCTTGAGGAGGTGGGTGCGACTTCTTCATGATctggagaga
gaaaggggggctACGGGAGGGCTGctaaaggaggaaggaagggacggcaG
TGTCTTGCCGGAATGGGCTGGAGCCATTTATATAGAGCGACAGCTTTTGG
AGTACGCGGCCTGCGAGCGaagacagaggggaggggcttcATTGTCAAGA
GGGGCCGCTaggcaagggaagaaggatgacAAAAGAGCCGGGACGGCCAA
GACTAAGCTCCGAGCTCTTCCCCGTCTGCTGAACAAGCATGGCGATTCCT
TCGCGGCTGATCCAATCAATACAGCTCCCTCGGTCTCATTAGAATGTGAA
GAAGCTGAGCTAGGACGGTCTTTACCGCCCCCACCCAAAGAACTCTTCGA
CGAGACTCTTCAGGAGCTTGAAAGAAGTGCGCAATTGATCATAGAACGCG
ATTCAAACaagaggaatgaggaggagtaAATGGCGACTTCTCTTCAAGGT
TTCCCGTCCGAGCAAGCTACCGCACATACTTTACATACGAAGACAATACG
TCTACCAGGACTCCACCGTCTGCTCCTTCGTGTGCAAATCGCTGATCTGC
CTCCCAGCAGACGGGCGCTTTGGAAGGACACGCATCACCAAATGCGAGAT
GTTGTTGCTCTTGCCGGAACGACAGCAAAAACAATTATTCGTACTTTGAT
AGAGTCGGAGATCCCCGCTGTGTCTGACCGTGATATAGCGCGTTTTGCCC
TTGTGATGGTGTACCCAACGAGGGAGGTCGACGGGAGTTTAACACATCTG
ATGCGCACGTTGAACCCTCACGAGCGGCCCATCAAATTGGTAAACTCTAT
GCTTGTagaaatggaagaaatgTCAAAGGGCACACGGAAAGAGGGGGTCA
GGGCCATCGGCATGGCAGACTCCACGGGCGGGTGTCCTGACTCCTCCGAT
GAGGGGGCCCCGGGAGGCGGTCGTGAGGCAAACTACGAGACACAATACGG
GCCGCAGATAGGCCGCGATAAGGGCGAAGGACTCATAAGAGTTATGAGCC
CGAGAACGGCCTTTACCCGCGAGCAGCTCTTGGACGAGCACCTCCTAAGC
TGGGTTCTCAAGGACACGGAGGGCCCGCCTTTGGACTTCCCGGGGTACCT
GAGCGGCCCTGAGGCCTCGGACGACGAGACGTCGCCGACTTGTCCAGCGG
CCTCCTGGTTCAGCGACCAGGCGGGGTGGAGCAAGCCCGGCTTGTCGGGT
TATCTTCTGAAGCGATCCTCCCGGGACCCGTGTCTTTGGCGCCGCCGCTG
GTGCGTCTTGGGGGAGGACAAATTCTGGTACATGAAAGCGAAGCATCGAC
GGAGCATGCGGGGAAAGGCGGCTTTTATCGCTCTGATGGGCATGCAGGTC
CTGGACCTGGAATgtggcgaaggagagagccGAGAGCTGCAGCGCGTGGC
CCccttgggcgtggaggtgcaGACCGCCGACCGGGTCTTCGTCTTCCGAG
CCCTCAGCCGCGAGCAGCAGGCGGAGTGGGTGCaggcgatgaggagggga
gtgagACTGGCGACGGAGAATGAGTGGTTAGCAATGGCTGAGCTGGttgt
gggagaggaagaaaaagcgagggagaggaggatcgaGGGTGTAGTAGAGC
GGGCTTGGGCTGCTTGCAcagaaagaggcagggatAATTGGAAATTCGAA
GAAGGGGtaacgaaaggaaaagagtgTAACGCGTCCTTAAACGTCGAGAT
GGGAGTCGCGGGGGCCGAAGAGAGGCACCCCGAAACTCGCCATGTTCCGT
CCGCTCGTCTaagcgtggagagggagagccgCGGGATGGTGAAGAGTCGA
GCGAGAGAGCTCTTGCGTGCAAAAGGCTCAAACTTAttaggcaagggagg
gataaATGCGGAGGGAAAAGTTGAAAGAGatagaagggagaaagacggaA
GACGGATGGAGCTGTCGGAATTACTTGGCTTCGCGATCGCAGTCCAGGAA
TACAGGGAGGTTTGCCGCTTGGGAGATGGTCCCGTACTGGCTTCGTCCTT
GAAAATGTGGGCAAAGGCACAAGCTGTCTACGATGCGTTCTTGAGGAGGT
GGGTGCGACTTCTTCATGATctggagagagaaaggggggctACGGGAGGG
CTGctaaaggaggaaggaagggacggcaGTGTCTTGCCGGAATGGGCTGG
AGCCATTTATATAGAGCGACAGCTTTTGGAGTACGCGGCCTGCGAGCGaa
gacagaggggaggggcttcATTGTCAAGAGGGGCCGCTaggcaagggaag
aaggatgacAAAAGAGCCGGGACGGCCAAGACTAAGCTCCGAGCTCTTCC
CCGTCTGCTGAACAAGCATGGCGATTCCTTCGCGGCTGATCCAATCAATA
CAGCTCCCTCGGTCTCATTAGAATGTGAAGAAGCTGAGCTAGGACGGTCT
TTACCGCCCCCACCCAAAGAACTCTTCGACGAGACTCTTCAGGAGCTTGA
AAGAAGTGCGCAATTGATCATAGAACGCGATTCAAACaagaggaatgagg
aggagtaA

Synonyms

Publications